CmoCh00G000820 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh00G000820
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionTransport membrane protein
LocationCmo_Chr00: 17167955 .. 17168971 (-)
RNA-Seq ExpressionCmoCh00G000820
SyntenyCmoCh00G000820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCACGATTGACTTTGCACGCTCCATCCTTCGGCCCTTCGCCTATCAGCTTGGCAGGCAAGCTAGCTGGATCCGTCTCTGGTTTCGATTCGTTATGCTCAGCACCTCCAACAATCTCGTCAGTCTCTTGCCGCCTAAAACTCTGCCAATCAAGCGCTGCTTTACGTTTCATCCCGTGTGCCCAGAGAATGCTATGTGTTCTCCACTTTCGGACCTCTCAAAGAGAGAACGTGTTTTTTCCTCTGACTTTCTCTCTCATTCGCGGAGCGAAGAAAGCCAGCTTTGCCCCAGCAACCGCTATCCTTGGGAAACCTAAAGAGCTACCGAAGGAAAGGGATGCAGTCTCTCCCTTGGTTTTTTTAGAGGAGAAGGCAGAGAAGAAAACGTCCTTAGCACAAGTTTTTTTGCTTCCTGCGCCCTTACTAGTAAAGGGGCTCTTCGAGCAAGGAGGAATCCTGGTAGGAAGGCCGACCACTACATAAGCCGCCATCTGTCCAGGAGAGAAGCAAGCTACCTTTCTTTGATCCACCTTCCCGGGCGTGGAAGAGAACAAAAATCTTCAATAGCATGCTCTTACTTCGTCTTTCCCTTAATAAGTCATCAAATTTGGTGCTTTTTGATCCCCAGTTGCTATGGAGAACAAAGGACGAAATACAATCGATTCCTCTATTTAAGTGGTTTTCGCTTCTCCTTATTCCTGTTCCTAAGTCTTCCCCGGGTAGTTCCCAATGTTTGGCACTTTCCATACTCCGTGGGTGCAACATCAACAAATTCGCTCATTCTCAAGTTACAACCTAAGATCTATGACCATATTATGTTAACTGTTCGTATTTCGTTCATTCTATCGGTATGCTCCCAAGTACCTGTAATTGTGATCTGTTTGCCAAAACTCAGGGGTCTTTCTATGGAAACCCTCACGAACAATCGTCATTTTTTGATGGTTTTTCCGCTTTTCACAGCATCTCTTTCCACACCTCCGGATATCTGGTGCCAAATCGTCGCCCGTTTCCTTATTTCTT

mRNA sequence

GCACGATTGACTTTGCACGCTCCATCCTTCGGCCCTTCGCCTATCAGCTTGGCAGGCAAGCTAGCTGGATCCGTCTCTGGTTTCGATTCGTTATGCTCAGCACCTCCAACAATCTCGTCAGTCTCTTGCCGCCTAAAACTCTGCCAATCAAGCGCTGCTTTACGTTTCATCCCGTGTGCCCAGAGAATGCTATGTGTTCTCCACTTTCGGACCTCTCAAAGAGAGAACGTGTTTTTTCCTCTGACTTTCTCTCTCATTCGCGGAGCGAAGAAAGCCAGCTTTGCCCCAGCAACCGCTATCCTTGGGAAACCTAAAGAGCTACCGAAGGAAAGGGATGCAGTCTCTCCCTTGTCATCAAATTTGGTGCTTTTTGATCCCCAGTTGCTATGGAGAACAAAGGACGAAATACAATCGATTCCTCTATTTAAGTGGTTTTCGCTTCTCCTTATTCCTTTACAACCTAAGATCTATGACCATATTATGTTAACTGTTCGTATTTCGTTCATTCTATCGGTATGCTCCCAAGTACCTGTAATTGTGATCTGTTTGCCAAAACTCAGGGGTCTTTCTATGGAAACCCTCACGAACAATCGTCATTTTTTGATGCATCTCTTTCCACACCTCCGGATATCTGGTGCCAAATCGTCGCCCGTTTCCTTATTTCTT

Coding sequence (CDS)

GCACGATTGACTTTGCACGCTCCATCCTTCGGCCCTTCGCCTATCAGCTTGGCAGGCAAGCTAGCTGGATCCGTCTCTGGTTTCGATTCGTTATGCTCAGCACCTCCAACAATCTCGTCAGTCTCTTGCCGCCTAAAACTCTGCCAATCAAGCGCTGCTTTACGTTTCATCCCGTGTGCCCAGAGAATGCTATGTGTTCTCCACTTTCGGACCTCTCAAAGAGAGAACGTGTTTTTTCCTCTGACTTTCTCTCTCATTCGCGGAGCGAAGAAAGCCAGCTTTGCCCCAGCAACCGCTATCCTTGGGAAACCTAAAGAGCTACCGAAGGAAAGGGATGCAGTCTCTCCCTTGTCATCAAATTTGGTGCTTTTTGATCCCCAGTTGCTATGGAGAACAAAGGACGAAATACAATCGATTCCTCTATTTAAGTGGTTTTCGCTTCTCCTTATTCCTTTACAACCTAAGATCTATGACCATATTATGTTAACTGTTCGTATTTCGTTCATTCTATCGGTATGCTCCCAAGTACCTGTAATTGTGATCTGTTTGCCAAAACTCAGGGGTCTTTCTATGGAAACCCTCACGAACAATCGTCATTTTTTGATGCATCTCTTTCCACACCTCCGGATATCTGGTGCCAAATCGTCGCCCGTTTCCTTATTTCTT

Protein sequence

ARLTLHAPSFGPSPISLAGKLAGSVSGFDSLCSAPPTISSVSCRLKLCQSSAALRFIPCAQRMLCVLHFRTSQRENVFFPLTFSLIRGAKKASFAPATAILGKPKELPKERDAVSPLSSNLVLFDPQLLWRTKDEIQSIPLFKWFSLLLIPLQPKIYDHIMLTVRISFILSVCSQVPVIVICLPKLRGLSMETLTNNRHFLMHLFPHLRISGAKSSPVSLFL
Homology
BLAST of CmoCh00G000820 vs. ExPASy Swiss-Prot
Match: P93312 (Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana OX=3702 GN=YMF16 PE=2 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 4.8e-16
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 148 LLIPLQPKIYDHIMLTVRISFILSVCSQVPVIVICLPKLRGLSMETLTNNRHFLM 203
           L+I LQPKIYD+IMLTVRISFI SVCSQVPVIVICL + RGLS+ET TNNR FLM
Sbjct: 152 LMIKLQPKIYDYIMLTVRISFISSVCSQVPVIVICLLEPRGLSLETFTNNRRFLM 206

BLAST of CmoCh00G000820 vs. ExPASy Swiss-Prot
Match: P38459 (Uncharacterized tatC-like protein ymf16 OS=Marchantia polymorpha OX=3197 GN=YMF16 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.9e-10
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 146 SLLLIPLQPKIYDHIMLTVRISFILSVCSQVPVIVICLPKLRGLSMETLTNNRHFLMHLF 205
           +LL+I LQPKI+D+IMLTVRI FI S+CSQVPV+VICL + +G  ++T   NR F    F
Sbjct: 142 NLLIIKLQPKIFDYIMLTVRILFISSICSQVPVLVICLLESKG--VKTFIKNRRFFYSFF 199

BLAST of CmoCh00G000820 vs. ExPASy TrEMBL
Match: A0A7J7HKH0 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_010380 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 9.8e-20
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 0

Query: 62  RMLCVLHFRTSQRENVFFPLTFSLIRGAKKASFAPATAILGKPKELPKERDAVSPLS 119
           RMLCVLHFR SQRENVFFPLTFSLIRGAKKA FAPATAILGKPKELPKER AVSPL+
Sbjct: 224 RMLCVLHFRISQRENVFFPLTFSLIRGAKKAGFAPATAILGKPKELPKERGAVSPLA 280

BLAST of CmoCh00G000820 vs. ExPASy TrEMBL
Match: A0A2Z6NWF0 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_291790 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-17
Identity = 62/104 (59.62%), Postives = 71/104 (68.27%), Query Frame = 0

Query: 118 SSNLVLFDPQLLWRTKDEIQSIPLFKWFSLLLIPLQPKIYDHIMLTVRISFILSVCSQVP 177
           SSNLVLFDPQLLW TK+EIQSIPLFKWFSLLL+P            V  S   S    VP
Sbjct: 11  SSNLVLFDPQLLWGTKEEIQSIPLFKWFSLLLVP------------VPNSSPGSSQCLVP 70

Query: 178 VIVICLPKLRGLSMETLTNNRHFLMHLFPHLRISGAKSSPVSLF 222
           VIVICLP+ RGLS+ET TNNR FLM +FP L  + A S+P  ++
Sbjct: 71  VIVICLPEPRGLSVETFTNNRRFLM-VFPLL--TAALSTPPDIW 99

BLAST of CmoCh00G000820 vs. ExPASy TrEMBL
Match: A0A3S5HWW2 (Transport membrane protein (Fragment) OS=Acacia ligulata OX=138025 GN=mttB PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-16
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 0

Query: 148 LLIPLQPKIYDHIMLTVRISFILSVCSQVPVIVICLPKLRGLSMETLTNNRHFLMHLFPH 207
           L+I LQPKIYDHIMLTVRISFI SVCSQVPVIVICLP+LRGLS+ET TNNR FLM +FP 
Sbjct: 147 LMIKLQPKIYDHIMLTVRISFIPSVCSQVPVIVICLPELRGLSVETFTNNRRFLM-VFPL 206

Query: 208 LRISGAKSSPVSLF 222
           L  + A S+P  ++
Sbjct: 207 L--TAALSTPPDIW 217

BLAST of CmoCh00G000820 vs. ExPASy TrEMBL
Match: A0A385G2A6 (Transport membrane protein OS=Ammopiptanthus mongolicus OX=126911 GN=mttB PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-16
Identity = 61/104 (58.65%), Postives = 70/104 (67.31%), Query Frame = 0

Query: 118 SSNLVLFDPQLLWRTKDEIQSIPLFKWFSLLLIPLQPKIYDHIMLTVRISFILSVCSQVP 177
           SSNLVLFDPQLLW TK+EIQSIPLFKWFSLLL P            V  S   S    VP
Sbjct: 11  SSNLVLFDPQLLWGTKEEIQSIPLFKWFSLLLFP------------VPNSSPGSSQCLVP 70

Query: 178 VIVICLPKLRGLSMETLTNNRHFLMHLFPHLRISGAKSSPVSLF 222
           VI+ICLP+ RGLS+ET TNNR FLM +FP L  + A S+P  ++
Sbjct: 71  VILICLPEPRGLSVETFTNNRRFLM-VFPLL--TAALSTPPDIW 99

BLAST of CmoCh00G000820 vs. ExPASy TrEMBL
Match: A0A385I1T7 (Transport membrane protein OS=Leucaena trichandra OX=190760 GN=mttB PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-16
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 0

Query: 148 LLIPLQPKIYDHIMLTVRISFILSVCSQVPVIVICLPKLRGLSMETLTNNRHFLMHLFPH 207
           L+I LQPKIYDHIMLTVRISFI SVCSQVPVIVICLP+LRGLS+ET TNNR FLM +FP 
Sbjct: 152 LMIKLQPKIYDHIMLTVRISFIPSVCSQVPVIVICLPELRGLSVETFTNNRRFLM-VFPL 211

Query: 208 LRISGAKSSPVSLF 222
           L  + A S+P  ++
Sbjct: 212 L--TAALSTPPDIW 222

BLAST of CmoCh00G000820 vs. TAIR 10
Match: ATMG00570.1 (Sec-independent periplasmic protein translocase )

HSP 1 Score: 94.7 bits (234), Expect = 9.7e-20
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 0

Query: 148 LLIPLQPKIYDHIMLTVRISFILSVCSQVPVIVICLPKLRGLSMETLTNNRHFLMHLFPH 207
           L+I LQPKIYDHIMLTVRISFI SVCSQVPVIVICLP+ RGLS+ET TNNR FLM +FP 
Sbjct: 158 LMIKLQPKIYDHIMLTVRISFIPSVCSQVPVIVICLPEPRGLSLETFTNNRRFLM-VFPL 217

Query: 208 LRISGAKSSPVSLF 222
           L  + A S+P  ++
Sbjct: 218 L--TAALSTPPDIW 228

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P933124.8e-1681.82Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana OX=3702 GN=YMF16... [more]
P384598.9e-1058.33Uncharacterized tatC-like protein ymf16 OS=Marchantia polymorpha OX=3197 GN=YMF1... [more]
Match NameE-valueIdentityDescription
A0A7J7HKH09.8e-2092.98Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_010380 PE=4 SV=1[more]
A0A2Z6NWF02.0e-1759.62Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_291790 PE=3 SV... [more]
A0A3S5HWW21.0e-1672.97Transport membrane protein (Fragment) OS=Acacia ligulata OX=138025 GN=mttB PE=3 ... [more]
A0A385G2A61.0e-1658.65Transport membrane protein OS=Ammopiptanthus mongolicus OX=126911 GN=mttB PE=3 S... [more]
A0A385I1T71.0e-1672.97Transport membrane protein OS=Leucaena trichandra OX=190760 GN=mttB PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ATMG00570.19.7e-2071.62Sec-independent periplasmic protein translocase [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh00G000820.1CmoCh00G000820.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion