CmoCh00G000760 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh00G000760
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPhotosystem II D2 protein, putative
LocationCmo_Chr00: 15929844 .. 15934124 (-)
RNA-Seq ExpressionCmoCh00G000760
SyntenyCmoCh00G000760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTATAGCCCTTGGTAAATTGACCAAAGACTCAAATGATTTCTTCTTCGAGATTATGGATGACTTGTTACAGAGGGACCGGTTCGGTGTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTTGTTGCCGTAGGAGGTTGGTTTATAGGTACACCCTTTGTAACTTAATGGTATACCTAACCATATGGATTGGCAAGTTCCTATTTGTTTGGAAGGATGCAACTTCTTAACCGCCTTTCGACTCCTGCTAATAGTTTAGCACACTCTTTCTTTGTTGTTACTATGGGGGCTTGAAGTGTTGGGGATCGATACCAGTCGTTAGCTCTGATACCAGTTGTTGGGATCGCACAACAACGCACACGCTCGATCTAGATGAACACAAAGAATGGGATAGAGAAAAGTGCACGGAGAACTCTGGCTAAAAGGATTTTTTTGTATTGATGACTTCACATATGTACAGTAAGAGAGAATTACAGAGAATAGAAAAGTACATCTTCAAGCTCTACTGGACGAGATATATATATGGTTTAGTTTACTTTATATAACTTTACCAGATTTAGTCATCTACTATATATAGCTATTTACCATATATAGCTTTACCGGATATAGCTTTACCATATATAACTTTACAATATATAGCTTTACTAAATATAGCTTTACCAGATATAACCGTTGACCAAGCTATAAATAAGAAGCAGGCTCCATAACCTAACAATTCTCCCACTTGGAGACTGATTTAGTCAACCAAGAATTTCACTCTCAAACGACCATGAGCATCTTCATTGCACCATACCAATTGAGGTTTTGCACCACCAAAATATTCCAACATCAACACATTTTGTCAACATGTTTGCTGGATTCTTTGCACCCTCTATCATCTCCAAACACGTCACCCTCTTCAACTAACCTCCGAGTGCAATGGTATCGCCTTCTGTGTTTTGAATGATAGACCGGGTTCCTCGCCAACAGCAAGAGTCTCAGGAGTTTCTTGAGTATTCGCTACAACATCACTATGTGAATCTTTCAGCAACTCAACCTCAACTCCCACTTGCTTCACCTCTGGTTTCTCAGCAAGAGTCTCAGGAGTTTCTTGAGTATTCGCTACAACATCACTATGTGAATCTTTCAGCAACTCAACCTCAACTCCCACTTGCTTCACCTCTGGTTTCTCAGCAAGAGTCTCAGGAGTTTCTTGAGTATCCGCTACAACATCACTCTGTGAATCTTTGAGCAACTCAACCTCAACTCCCACTTGCTTCACCTCTAGTGTTTCAGCGACACTTCCGGCCGACGCAACCCCCTCTGGAGTTTCAGCGACGCTTCCGGCTGACACAACCCCCTCTAGAGTTTCAGCGATGTTGCTTCCGGTCGACGCAACTCCCTCTGAAGTTTCAGCGACGCTTCCGGCCGACGCAACCTCCTTTGGAGTTTCTGCGACGCTTCCAGTGGACACAACCCCCTTTGGAGTTTCAGCGACGCTTCCGCCCGACGCATCTCCCTCTGAAGTTTCAGCGACGCTTCCAGCCGACGCAACCCCCTCTGGAGTTTCAGCGACGCTTCCGGCCGACGCTACCCCCTCTGGAGTTTCAGCTACGCTTCCAGCCGACGCAACCCCCTGTGGAGTTTTAGTGACGCTTCCGGTCGACTCAACTTCCTCTGGAGTTTCAGCGACGCTTCCGGCCGACGCAACCCCCTCTGGAGTTTCAGCGACGCTTTCGGCCGATGCAACCCCCTCTGGAGTTTCAGCGACGCTTCCAGCCGACGCAACCCCCTGTGGAGTTTTAGTGACGTTTCCGGTCGACTCAACTTCCTCTAGAGCTTCAGCGACGCTTCCGGCTAACGCAAACCTTCTCTAGAGTTTCAGTGATGCTTTCGGTGACACAACCCCCTCCGGACTTTCAGCGACGCTTCCGGCCGACGCAACCCCCTATAGAGTTTAAGTGACGCTTCCGGCCGACGCAACTTCCTCTGGAGTTTCAGCGACTCTTCCGGCCGACACAACCCCCTCTTGAGTTTCAGCGAAACTTTCGGCCGACGCAACCCCCTCTGGAGTTTCAGCGACGCTTCGGACTGACCCAACCCCCTCTGGAGTTTCAGCGACGCTTCTGACCGACACAACACCCTCTGGAGTTTCAACAACGCTTCTAGCCGATGCAACCCCCTCTGGAGTTTCAGCGACACTTCCGGCCGATGCAACCCCCTTTAGAGTTTCAGCGACGCTTCCAGTCGACGCAACTTCCTCTAGAGTTTCAGCGACGCTTCCGGCCGACGCAACCCCCTCTGGAGTTTCAGCGACGCTTCCGGCCGACACAACCCCCTCTGGAGTTTCAGCGACGCTTCCGGCCGACACAACTTCCTCTGAAGTTTTAGCGATGCTTCCGGCCGACGCAACCCTCTCTGAAGTTTCAGCGACGCTTTCGGCCGACCCAACCTTCTCTGGAGTTTCAACGACGCTTCCGGCCGACCCAACCCCCTCTAGAGTTTTAGCGACGCTTCCGGCCGACACAACTCCCTCTGGAGTTTCAGCGACGCTTCAGGTCGACGCAACTTCCTCTAGAGTTTTAGTGACGCTTCCGACCGACGCAACCCCCTCTGGAGTTTCAGCGACGCTTCCGGCCGACACAACCCCCTCTGGAGTTTCAGCGATGCTTCCGGCCGACGCAACCCCCTCTGGAGTTTCAGCGACGCTTCCGGCCGACACAACCCCCTCTGGAGTTTCAGCGATGCTTCCGGCCGACGCAACTTCCTCAGAAGTTTTAGCGATGCTTCCGGCCGACGCAACCCCCTCTGGAGTTTCAACGACGCTTTCGGCCGACCCAACCTTCTCTGGAGTTTCAACGACGCTTTCGGTCGACCCAACCCCCTCTGGAGTTTCAGCGACGCTTCTGGCCGACACAACCCCCTCTGGAGTTTCAGCGACGCTTCTGGCCGACACAACCCCCTCTGGAGTTTCAGCGACACTTCCGATACTTTTCTTCAATTCTCTAACAGTCTTTGTGAAGGTAACTCGTTTTTGTTTGCTCGTAACGCAGTTCTCACAAGGACTCATAACAATCTCCACATCAAATACACTTTGTTCATAGCCGATGGTTTTTCGTACATATTCGACAGCGTCTTCAACAGACCTGACGTTGTCTTCTCCTTGATAATGTTGAATGCCACGTTTTTGGATAGCATCAACCGAATCAGCCCCAAGGCTTGTCGATCCTTGAGCTTCCACTGTTCCGTGGTCATGGTATCCGGCTTCACCCCCAAGAGAGGTTCGTGAAGATCTTTCTGGTATAGATAATCTTCAATCTGCATCTTCCAGAAACCAAAATCGGATCCATCGAACTTCTCAATTCCAATCTTTGAACTTTCCATCTTCACAGATCGTGGTGAATTTCGCCTAGCTCTGACTTTTGCCTGGCTCTGACTTCTGCTTGGCTCTGACTTCCGCCTGGCTCTGACTTCCGCCTGGCTCTGACTTCTGCCTAGCTATGATACCAGTTGTTGGGGATCGATACCAGTCGTTAGCTCTGATACCAGTTGTTGGGATCGCACAACAACGCACACGCTCGATCTAGATGAACACAAAGAATGAAATAGAGAAAAGTGCAAAGAGAACTCTAGCTAAAAGGATTTTTTTGTATTGATGACTTCACATATGTACAGTAAGAGAGAATTACAGAGAATAGAAAAGTATATCTTCAAAGTTCTACCGGACGAGATATATATATGGTTTAGTTTACTATATATAACTTTACCAGATTTAGCCATCTACTATATATAGCTATTTACAATATATAGCTTTACCGGATATAGCTTTACCATATATAGCTTTACTATATATAGCTTTACTAAATATAGCTTTATCGGATATAACCGTTGACCAAGCTATAAATAAGGAGCAGGCTCCATAACCTAACATGAAGGTGTCCATTACCATTAGGCAGAAGGAGATAGATTTGACTCGCTGTGGTTTGTGGACTTTTGTTGCTCTCTACGGTTCGGACTAATAGGTTTCATGGTACGTCTGAACTTGCTCGATCTGTTCAATTGCTTTGTTTGTTTTCGTATTCCTGATGATTGATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGATGTAGCAGCTATATTTCGATTCATCCTCCTTTTCCCAGAAATTAAATAATTGGACATGGAACCCATTTCATATGATGGGAGTTGGTTGTGGGTGTATTGGGCGCTGCTCGGCTATGGTGCTATTCATTCATGGTGCTACCGTCGAAAATCCCTAA

mRNA sequence

ATGACTATAGCCCTTGGTAAATTGACCAAAGACTCAAATGATTTCTTCTTCGAGATTATGGATGACTTGTTACAGAGGGACCGGTTCGGTGTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTTGTTGCCGTAGGAGGTTGGTTTATAGGTACACCCTTTCTATATTTCGATTCATCCTCCTTTTCCCAGAAATTAAATAATTGGACATGGAACCCATTTCATATGATGGGAGTTGGTTGTGGGTGTATTGGGCGCTGCTCGGCTATGGTGCTATTCATTCATGGTGCTACCGTCGAAAATCCCTAA

Coding sequence (CDS)

ATGACTATAGCCCTTGGTAAATTGACCAAAGACTCAAATGATTTCTTCTTCGAGATTATGGATGACTTGTTACAGAGGGACCGGTTCGGTGTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTTGTTGCCGTAGGAGGTTGGTTTATAGGTACACCCTTTCTATATTTCGATTCATCCTCCTTTTCCCAGAAATTAAATAATTGGACATGGAACCCATTTCATATGATGGGAGTTGGTTGTGGGTGTATTGGGCGCTGCTCGGCTATGGTGCTATTCATTCATGGTGCTACCGTCGAAAATCCCTAA

Protein sequence

MTIALGKLTKDSNDFFFEIMDDLLQRDRFGVVGWSGLLLFPCAYFVAVGGWFIGTPFLYFDSSSFSQKLNNWTWNPFHMMGVGCGCIGRCSAMVLFIHGATVENP
Homology
[Close]
BLAST of CmoCh00G000760 vs. ExPASy Swiss-Prot
Match: B2XWK0 (Photosystem II D2 protein OS=Fagopyrum esculentum subsp. ancestrale OX=180217 GN=psbD PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-17
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 0 

Query: 1  MTIALGKLTKDSNDFFFEIMDDLLQRDRFGVVGWSGLLLFPCAYFVAVGGWFIGTPFL 59
          MTIALGK+TKD ND  F+IMDD L+RDRF  VGWSGLLLFPCAYF AVGGWF GT F+
Sbjct: 1  MTIALGKVTKDEND-LFDIMDDWLRRDRFVFVGWSGLLLFPCAYF-AVGGWFTGTTFV 56

[Close]
BLAST of CmoCh00G000760 vs. ExPASy Swiss-Prot
Match: Q56P05 (Photosystem II D2 protein OS=Lactuca sativa OX=4236 GN=psbD PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-17
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 0 

Query: 1  MTIALGKLTKDSNDFFFEIMDDLLQRDRFGVVGWSGLLLFPCAYFVAVGGWFIGTPFL 59
          MTIALGK+TKD ND  F+IMDD L+RDRF  VGWSGLLLFPCAYF AVGGWF GT F+
Sbjct: 1  MTIALGKVTKDEND-LFDIMDDWLRRDRFVFVGWSGLLLFPCAYF-AVGGWFTGTTFV 56

[Close]
BLAST of CmoCh00G000760 vs. ExPASy Swiss-Prot
Match: P69685 (Photosystem II D2 protein OS=Antirrhinum majus OX=4151 GN=psbD PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-17
Identity = 45/58 (77.59%), Postives = 48/58 (82.76%), Query Frame = 0 

Query: 1  MTIALGKLTKDSNDFFFEIMDDLLQRDRFGVVGWSGLLLFPCAYFVAVGGWFIGTPFL 59
          MTIALGK TKD ND  F+IMDD L+RDRF  VGWSGLLLFPCAYF AVGGWF GT F+
Sbjct: 1  MTIALGKFTKDEND-LFDIMDDWLRRDRFVFVGWSGLLLFPCAYF-AVGGWFTGTTFV 56

[Close]
BLAST of CmoCh00G000760 vs. ExPASy Swiss-Prot
Match: B5LMM1 (Photosystem II D2 protein OS=Cicer arietinum OX=3827 GN=psbD PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-17
Identity = 45/58 (77.59%), Postives = 48/58 (82.76%), Query Frame = 0 

Query: 1  MTIALGKLTKDSNDFFFEIMDDLLQRDRFGVVGWSGLLLFPCAYFVAVGGWFIGTPFL 59
          MTIALGK TKD ND  F+IMDD L+RDRF  VGWSGLLLFPCAYF AVGGWF GT F+
Sbjct: 1  MTIALGKFTKDQND-LFDIMDDWLRRDRFVFVGWSGLLLFPCAYF-AVGGWFTGTTFV 56

[Close]
BLAST of CmoCh00G000760 vs. ExPASy Swiss-Prot
Match: Q1KXW4 (Photosystem II D2 protein OS=Helianthus annuus OX=4232 GN=psbD PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-17
Identity = 45/58 (77.59%), Postives = 48/58 (82.76%), Query Frame = 0 

Query: 1  MTIALGKLTKDSNDFFFEIMDDLLQRDRFGVVGWSGLLLFPCAYFVAVGGWFIGTPFL 59
          MTIALGK TKD ND  F+IMDD L+RDRF  VGWSGLLLFPCAYF AVGGWF GT F+
Sbjct: 1  MTIALGKFTKDEND-LFDIMDDWLRRDRFVFVGWSGLLLFPCAYF-AVGGWFTGTTFV 56

[Close]
BLAST of CmoCh00G000760 vs. ExPASy TrEMBL
Match: A0A540L9T2 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_031200 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.1e-24
Identity = 68/114 (59.65%), Postives = 77/114 (67.54%), Query Frame = 0 

Query: 1   MTIALGKLTKDSNDFFFEIMDDLLQRDRFGVVGWSGLLLFPCAYFVAVGGWFIGTPFLYF 60
           MTIALGK TKD ND  F+IMDD L+RDRF  VGWSGLLLFPCAYF A+GGWF G    +F
Sbjct: 1   MTIALGKFTKDEND-LFDIMDDWLRRDRFVFVGWSGLLLFPCAYF-ALGGWFTGQSGWFF 60

Query: 61  DSS----------SFSQKLNNWTWNPFHMMGVGCGCIGRCSAMVLFIHGATVEN 105
             S           F Q  +NWT NPFHMMGV  G +G  +A++  IHGATVEN
Sbjct: 61  APSFGVAAIFRFIRFFQGFHNWTLNPFHMMGV-AGVLG--AALLCAIHGATVEN 109

[Close]
BLAST of CmoCh00G000760 vs. ExPASy TrEMBL
Match: A0A078EKT7 (BnaC05g32120D protein OS=Brassica napus OX=3708 GN=BnaC05g32120D PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.6e-23
Identity = 67/114 (58.77%), Postives = 76/114 (66.67%), Query Frame = 0 

Query: 1   MTIALGKLTKDSNDFFFEIMDDLLQRDRFGVVGWSGLLLFPCAYFVAVGGWFIGTPFLYF 60
           MTIALGK TKD  D  F+IMDD L+RDRF  VGWSGLLLFPCAYF A+GGWF G    +F
Sbjct: 1   MTIALGKFTKDEKD-LFDIMDDWLRRDRFVFVGWSGLLLFPCAYF-ALGGWFTGQSGWFF 60

Query: 61  DSS----------SFSQKLNNWTWNPFHMMGVGCGCIGRCSAMVLFIHGATVEN 105
             S           F Q  +NWT NPFHMMGV  G +G  +A++  IHGATVEN
Sbjct: 61  APSFGVAAIFRFILFFQGFHNWTLNPFHMMGV-AGVLG--AALLCAIHGATVEN 109

[Close]
BLAST of CmoCh00G000760 vs. ExPASy TrEMBL
Match: A0A3P6H9V0 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC29T60453H PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.6e-23
Identity = 67/114 (58.77%), Postives = 76/114 (66.67%), Query Frame = 0 

Query: 1   MTIALGKLTKDSNDFFFEIMDDLLQRDRFGVVGWSGLLLFPCAYFVAVGGWFIGTPFLYF 60
           MTIALGK TKD  D  F+IMDD L+RDRF  VGWSGLLLFPCAYF A+GGWF G    +F
Sbjct: 7   MTIALGKFTKDEKD-LFDIMDDWLRRDRFVFVGWSGLLLFPCAYF-ALGGWFTGQSGWFF 66

Query: 61  DSS----------SFSQKLNNWTWNPFHMMGVGCGCIGRCSAMVLFIHGATVEN 105
             S           F Q  +NWT NPFHMMGV  G +G  +A++  IHGATVEN
Sbjct: 67  APSFGVAAIFRFILFFQGFHNWTLNPFHMMGV-AGVLG--AALLCAIHGATVEN 115

[Close]
BLAST of CmoCh00G000760 vs. ExPASy TrEMBL
Match: A0A078HPI2 (BnaC03g60960D protein OS=Brassica napus OX=3708 GN=BnaC03g60960D PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.6e-23
Identity = 67/114 (58.77%), Postives = 76/114 (66.67%), Query Frame = 0 

Query: 1   MTIALGKLTKDSNDFFFEIMDDLLQRDRFGVVGWSGLLLFPCAYFVAVGGWFIGTPFLYF 60
           MTIALGK TKD  D  F+IMDD L+RDRF  VGWSGLLLFPCAYF A+GGWF G    +F
Sbjct: 7   MTIALGKFTKDEKD-LFDIMDDWLRRDRFVFVGWSGLLLFPCAYF-ALGGWFTGQSGWFF 66

Query: 61  DSS----------SFSQKLNNWTWNPFHMMGVGCGCIGRCSAMVLFIHGATVEN 105
             S           F Q  +NWT NPFHMMGV  G +G  +A++  IHGATVEN
Sbjct: 67  APSFGVAAIFRFILFFQGFHNWTLNPFHMMGV-AGVLG--AALLCAIHGATVEN 115

[Close]
BLAST of CmoCh00G000760 vs. ExPASy TrEMBL
Match: A0A3P6DR44 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC140T45604Z PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.6e-23
Identity = 67/114 (58.77%), Postives = 76/114 (66.67%), Query Frame = 0 

Query: 1   MTIALGKLTKDSNDFFFEIMDDLLQRDRFGVVGWSGLLLFPCAYFVAVGGWFIGTPFLYF 60
           MTIALGK TKD  D  F+IMDD L+RDRF  VGWSGLLLFPCAYF A+GGWF G    +F
Sbjct: 7   MTIALGKFTKDEKD-LFDIMDDWLRRDRFVFVGWSGLLLFPCAYF-ALGGWFTGQSGWFF 66

Query: 61  DSS----------SFSQKLNNWTWNPFHMMGVGCGCIGRCSAMVLFIHGATVEN 105
             S           F Q  +NWT NPFHMMGV  G +G  +A++  IHGATVEN
Sbjct: 67  APSFGVAAIFRFILFFQGFHNWTLNPFHMMGV-AGVLG--AALLCAIHGATVEN 115

[Close]
BLAST of CmoCh00G000760 vs. NCBI nr
Match: TQD83237.1 (hypothetical protein C1H46_031200 [Malus baccata])

HSP 1 Score: 120.6 bits (301), Expect = 8.4e-24
Identity = 68/114 (59.65%), Postives = 77/114 (67.54%), Query Frame = 0 

Query: 1   MTIALGKLTKDSNDFFFEIMDDLLQRDRFGVVGWSGLLLFPCAYFVAVGGWFIGTPFLYF 60
           MTIALGK TKD ND  F+IMDD L+RDRF  VGWSGLLLFPCAYF A+GGWF G    +F
Sbjct: 1   MTIALGKFTKDEND-LFDIMDDWLRRDRFVFVGWSGLLLFPCAYF-ALGGWFTGQSGWFF 60

Query: 61  DSS----------SFSQKLNNWTWNPFHMMGVGCGCIGRCSAMVLFIHGATVEN 105
             S           F Q  +NWT NPFHMMGV  G +G  +A++  IHGATVEN
Sbjct: 61  APSFGVAAIFRFIRFFQGFHNWTLNPFHMMGV-AGVLG--AALLCAIHGATVEN 109

[Close]
BLAST of CmoCh00G000760 vs. NCBI nr
Match: CAF1706430.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-23
Identity = 67/112 (59.82%), Postives = 76/112 (67.86%), Query Frame = 0 

Query: 1   MTIALGKLTKDSNDFFFEIMDDLLQRDRFGVVGWSGLLLFPCAYFVAVGGWFIGTPFL-- 60
           MTIALGK  KD  D  F+IMDD L+RDRF  VGWSGLLLFPCAYF A+GGWF GT F+  
Sbjct: 1   MTIALGKFPKDEKD-LFDIMDDWLRRDRFVFVGWSGLLLFPCAYF-ALGGWFTGTTFVTS 60

Query: 61  ------YFDSSSFSQKLNNWTWNPFHMMGVGCGCIGRCSAMVLFIHGATVEN 105
                  F    F Q  +NWT NPFHMMGV  G +G  +A++  IHGATVEN
Sbjct: 61  CFGVAAIFRFILFFQGFHNWTLNPFHMMGV-AGVLG--AALLCAIHGATVEN 107

[Close]
BLAST of CmoCh00G000760 vs. NCBI nr
Match: CDY29457.1 (BnaC05g32130D [Brassica napus] >CDY29458.1 BnaC05g32120D [Brassica napus])

HSP 1 Score: 117.9 bits (294), Expect = 5.4e-23
Identity = 67/114 (58.77%), Postives = 76/114 (66.67%), Query Frame = 0 

Query: 1   MTIALGKLTKDSNDFFFEIMDDLLQRDRFGVVGWSGLLLFPCAYFVAVGGWFIGTPFLYF 60
           MTIALGK TKD  D  F+IMDD L+RDRF  VGWSGLLLFPCAYF A+GGWF G    +F
Sbjct: 1   MTIALGKFTKDEKD-LFDIMDDWLRRDRFVFVGWSGLLLFPCAYF-ALGGWFTGQSGWFF 60

Query: 61  DSS----------SFSQKLNNWTWNPFHMMGVGCGCIGRCSAMVLFIHGATVEN 105
             S           F Q  +NWT NPFHMMGV  G +G  +A++  IHGATVEN
Sbjct: 61  APSFGVAAIFRFILFFQGFHNWTLNPFHMMGV-AGVLG--AALLCAIHGATVEN 109

[Close]
BLAST of CmoCh00G000760 vs. NCBI nr
Match: CDY39486.1 (BnaC03g60960D [Brassica napus] >VDD26191.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 117.9 bits (294), Expect = 5.4e-23
Identity = 67/114 (58.77%), Postives = 76/114 (66.67%), Query Frame = 0 

Query: 1   MTIALGKLTKDSNDFFFEIMDDLLQRDRFGVVGWSGLLLFPCAYFVAVGGWFIGTPFLYF 60
           MTIALGK TKD  D  F+IMDD L+RDRF  VGWSGLLLFPCAYF A+GGWF G    +F
Sbjct: 7   MTIALGKFTKDEKD-LFDIMDDWLRRDRFVFVGWSGLLLFPCAYF-ALGGWFTGQSGWFF 66

Query: 61  DSS----------SFSQKLNNWTWNPFHMMGVGCGCIGRCSAMVLFIHGATVEN 105
             S           F Q  +NWT NPFHMMGV  G +G  +A++  IHGATVEN
Sbjct: 67  APSFGVAAIFRFILFFQGFHNWTLNPFHMMGV-AGVLG--AALLCAIHGATVEN 115

[Close]
BLAST of CmoCh00G000760 vs. NCBI nr
Match: VDD65225.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 117.9 bits (294), Expect = 5.4e-23
Identity = 67/114 (58.77%), Postives = 76/114 (66.67%), Query Frame = 0 

Query: 1   MTIALGKLTKDSNDFFFEIMDDLLQRDRFGVVGWSGLLLFPCAYFVAVGGWFIGTPFLYF 60
           MTIALGK TKD  D  F+IMDD L+RDRF  VGWSGLLLFPCAYF A+GGWF G    +F
Sbjct: 7   MTIALGKFTKDEKD-LFDIMDDWLRRDRFVFVGWSGLLLFPCAYF-ALGGWFTGQSGWFF 66

Query: 61  DSS----------SFSQKLNNWTWNPFHMMGVGCGCIGRCSAMVLFIHGATVEN 105
             S           F Q  +NWT NPFHMMGV  G +G  +A++  IHGATVEN
Sbjct: 67  APSFGVAAIFRFILFFQGFHNWTLNPFHMMGV-AGVLG--AALLCAIHGATVEN 115

[Close]
BLAST of CmoCh00G000760 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D )

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-17
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0 

Query: 1  MTIALGKLTKDSNDFFFEIMDDLLQRDRFGVVGWSGLLLFPCAYFVAVGGWFIGTPFL 59
          MTIALGK TKD  D  F+IMDD L+RDRF  VGWSGLLLFPCAYF A+GGWF GT F+
Sbjct: 1  MTIALGKFTKDEKD-LFDIMDDWLRRDRFVFVGWSGLLLFPCAYF-ALGGWFTGTTFV 56

The following BLAST results are available for this feature:
BLAST of CmoCh00G000760 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
B2XWK01.2e-1777.59Photosystem II D2 protein OS=Fagopyrum esculentum subsp. ancestrale OX=180217 GN... [more]
Q56P051.2e-1777.59Photosystem II D2 protein OS=Lactuca sativa OX=4236 GN=psbD PE=3 SV=1[more]
P696851.6e-1777.59Photosystem II D2 protein OS=Antirrhinum majus OX=4151 GN=psbD PE=1 SV=1[more]
B5LMM11.6e-1777.59Photosystem II D2 protein OS=Cicer arietinum OX=3827 GN=psbD PE=3 SV=1[more]
Q1KXW41.6e-1777.59Photosystem II D2 protein OS=Helianthus annuus OX=4232 GN=psbD PE=3 SV=1[more]
BLAST of CmoCh00G000760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A540L9T24.1e-2459.65Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_031200 PE=3 SV=1[more]
A0A078EKT72.6e-2358.77BnaC05g32120D protein OS=Brassica napus OX=3708 GN=BnaC05g32120D PE=3 SV=1[more]
A0A3P6H9V02.6e-2358.77Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC29T60453H PE=3 SV=1[more]
A0A078HPI22.6e-2358.77BnaC03g60960D protein OS=Brassica napus OX=3708 GN=BnaC03g60960D PE=3 SV=1[more]
A0A3P6DR442.6e-2358.77Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC140T45604Z PE=3 S... [more]
BLAST of CmoCh00G000760 vs. NCBI nr
Match NameE-valueIdentityDescription
TQD83237.18.4e-2459.65hypothetical protein C1H46_031200 [Malus baccata][more]
CAF1706430.12.4e-2359.82unnamed protein product [Brassica napus][more]
CDY29457.15.4e-2358.77BnaC05g32130D [Brassica napus] >CDY29458.1 BnaC05g32120D [Brassica napus][more]
CDY39486.15.4e-2358.77BnaC03g60960D [Brassica napus] >VDD26191.1 unnamed protein product [Brassica rap... [more]
VDD65225.15.4e-2358.77unnamed protein product [Brassica oleracea][more]
BLAST of CmoCh00G000760 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00270.11.2e-1774.14photosystem II reaction center protein D [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000484Photosynthetic reaction centre, L/MPFAMPF00124Photo_RCcoord: 62..104
e-value: 2.1E-5
score: 23.9
IPR000484Photosynthetic reaction centre, L/MPANTHERPTHR33149PHOTOSYSTEM II PROTEIN D1coord: 64..104
IPR036854Photosystem II protein D1/D2 superfamilyGENE3D1.20.85.10coord: 31..105
e-value: 1.5E-5
score: 26.7
IPR036854Photosystem II protein D1/D2 superfamilySUPERFAMILY81483Bacterial photosystem II reaction centre, L and M subunitscoord: 21..104
NoneNo IPR availablePANTHERPTHR33149:SF7PHOTOSYSTEM II D2 PROTEINcoord: 64..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh00G000760.1CmoCh00G000760.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0010242 oxygen evolving activity