Cmc12g0328021 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0328021
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	TTF-type domain-containing protein
Location	CMiso1.1chr12: 19173518 .. 19173826 (+)
RNA-Seq Expression	Cmc12g0328021
Synteny	Cmc12g0328021

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGTTGGGTTAACAAGTATTGGTGATCTTTCTCAAAAAATGGTGACAATAGCTAAAGATAAAGTTTACCCATTAGTCTATCGGTTGCTTACCTTAGCATTGATCTTACCAGTTACAACGGCTACCGTGGAGAGCACATTTTCTGCTACGAGCATTATAAAGACTCAGTTGCGTAATCGAATGGAAGACCAATGGATGAATGATTGTCTTATAGCATATATTGAGAGAGATTTATTTGATAAGATAGATAATGAAGCTATTATGTATCAATTTCAAAATATGAAATCTCGTAGGGGACAATTATGA

mRNA sequence

ATGTTTGTTGGGTTAACAAGTATTGGTGATCTTTCTCAAAAAATGGTGACAATAGCTAAAGATAAAGTTTACCCATTAGTCTATCGGTTGCTTACCTTAGCATTGATCTTACCAGTTACAACGGCTACCGTGGAGAGCACATTTTCTGCTACGAGCATTATAAAGACTCAGTTGCGTAATCGAATGGAAGACCAATGGATGAATGATTGTCTTATAGCATATATTGAGAGAGATTTATTTGATAAGATAGATAATGAAGCTATTATGTATCAATTTCAAAATATGAAATCTCGTAGGGGACAATTATGA

Coding sequence (CDS)

ATGTTTGTTGGGTTAACAAGTATTGGTGATCTTTCTCAAAAAATGGTGACAATAGCTAAAGATAAAGTTTACCCATTAGTCTATCGGTTGCTTACCTTAGCATTGATCTTACCAGTTACAACGGCTACCGTGGAGAGCACATTTTCTGCTACGAGCATTATAAAGACTCAGTTGCGTAATCGAATGGAAGACCAATGGATGAATGATTGTCTTATAGCATATATTGAGAGAGATTTATTTGATAAGATAGATAATGAAGCTATTATGTATCAATTTCAAAATATGAAATCTCGTAGGGGACAATTATGA

Protein sequence

MFVGLTSIGDLSQKMVTIAKDKVYPLVYRLLTLALILPVTTATVESTFSATSIIKTQLRNRMEDQWMNDCLIAYIERDLFDKIDNEAIMYQFQNMKSRRGQL

Homology

[Close]

BLAST of Cmc12g0328021 vs. NCBI nr
Match: XP_008449194.1 (PREDICTED: uncharacterized protein LOC103491145 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 2.1e-40
Identity = 90/102 (88.24%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   MFVGLTSIGDLSQKMVTIAKDKVYPLVYRLLTLALILPVTTATVESTFSATSIIKTQLRN 60
           MFVGLTSIGD SQKMV  AKDKVYPLVYRLLTLALILPVTTATV+  FSA SIIKTQ R 
Sbjct: 212 MFVGLTSIGDFSQKMVITAKDKVYPLVYRLLTLALILPVTTATVKRIFSAMSIIKTQFRT 271

Query: 61  RMEDQWMNDCLIAYIERDLFDKIDNEAIMYQFQNMKSRRGQL 103
           RM+DQWMNDCL+AYIERDLFDKIDNEAIMY+FQNMKSRRGQL
Sbjct: 272 RMKDQWMNDCLVAYIERDLFDKIDNEAIMYRFQNMKSRRGQL 313

[Close]

BLAST of Cmc12g0328021 vs. NCBI nr
Match: TYK00355.1 (copia-type polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 154.8 bits (390), Expect = 3.9e-34
Identity = 80/86 (93.02%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1   MFVGLTSIGDLSQKMVTIAKDKVYPLVYRLLTLALILPVTTATVESTFSATSIIKTQLRN 60
           MFVGLTSIGDLSQKMV  AKDKVYPLVYRLLTLALILPVT ATVE TFSA SIIKTQLRN
Sbjct: 167 MFVGLTSIGDLSQKMVITAKDKVYPLVYRLLTLALILPVTMATVERTFSAMSIIKTQLRN 226

Query: 61  RMEDQWMNDCLIAYIERDLFDKIDNE 87
           RMEDQWMNDCL+AYIERDLFDKIDNE
Sbjct: 227 RMEDQWMNDCLVAYIERDLFDKIDNE 252

[Close]

BLAST of Cmc12g0328021 vs. NCBI nr
Match: KAA0066112.1 (Dimer_Tnp_hAT domain-containing protein [Cucumis melo var. makuwa] >TYK15151.1 Dimer_Tnp_hAT domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 139.8 bits (351), Expect = 1.3e-29
Identity = 70/101 (69.31%), Postives = 85/101 (84.16%), Query Frame = 0


Query: 2   FVGLTSIGDLSQKMVTIAKDKVYPLVYRLLTLALILPVTTATVESTFSATSIIKTQLRNR 61
           FV L SIGDL+ KMV   +DKVY LVY+LLTLALILPV T T+E TFSA +++KT+LRNR
Sbjct: 52  FVELKSIGDLAVKMVVTKRDKVYLLVYQLLTLALILPVATVTIERTFSAMNVVKTRLRNR 111

Query: 62  MEDQWMNDCLIAYIERDLFDKIDNEAIMYQFQNMKSRRGQL 103
           + DQWMNDCLIAYIE+DL DK+DN+ IM +FQ MK+R+GQL
Sbjct: 112 IGDQWMNDCLIAYIEKDLLDKLDNKLIMDRFQRMKTRKGQL 152

[Close]

BLAST of Cmc12g0328021 vs. NCBI nr
Match: XP_030487038.1 (zinc finger MYM-type protein 1-like [Cannabis sativa])

HSP 1 Score: 139.0 bits (349), Expect = 2.2e-29
Identity = 69/101 (68.32%), Postives = 86/101 (85.15%), Query Frame = 0


Query: 2   FVGLTSIGDLSQKMVTIAKDKVYPLVYRLLTLALILPVTTATVESTFSATSIIKTQLRNR 61
           F+GL SIGDL++KMV   K  VYPLVYRL+TLALILPV TATVE  FS+ +I+K++LRNR
Sbjct: 616 FLGLKSIGDLAEKMVETKKHIVYPLVYRLITLALILPVVTATVERVFSSMNILKSRLRNR 675

Query: 62  MEDQWMNDCLIAYIERDLFDKIDNEAIMYQFQNMKSRRGQL 103
           M DQ+MNDCL+ YIE+D+F+ +DNE IM +FQNMKSRRG+L
Sbjct: 676 MGDQFMNDCLLVYIEKDIFNSLDNEVIMQRFQNMKSRRGRL 716

[Close]

BLAST of Cmc12g0328021 vs. NCBI nr
Match: XP_030498012.1 (zinc finger MYM-type protein 1-like [Cannabis sativa])

HSP 1 Score: 138.7 bits (348), Expect = 2.9e-29
Identity = 68/101 (67.33%), Postives = 86/101 (85.15%), Query Frame = 0


Query: 2   FVGLTSIGDLSQKMVTIAKDKVYPLVYRLLTLALILPVTTATVESTFSATSIIKTQLRNR 61
           F+GL SIGDL++KMV   K  +YPLVYRL+TLALILPV TATVE  FS+ +I+K++LRNR
Sbjct: 672 FLGLKSIGDLAEKMVETKKHIIYPLVYRLITLALILPVVTATVERVFSSMNILKSRLRNR 731

Query: 62  MEDQWMNDCLIAYIERDLFDKIDNEAIMYQFQNMKSRRGQL 103
           M DQ+MNDCL+ YIE+D+F+ +DNE IM +FQNMKSRRG+L
Sbjct: 732 MGDQFMNDCLLVYIEKDIFNSLDNEVIMQRFQNMKSRRGRL 772

[Close]

BLAST of Cmc12g0328021 vs. ExPASy TrEMBL
Match: A0A1S3BM43 (uncharacterized protein LOC103491145 OS=Cucumis melo OX=3656 GN=LOC103491145 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.0e-40
Identity = 90/102 (88.24%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   MFVGLTSIGDLSQKMVTIAKDKVYPLVYRLLTLALILPVTTATVESTFSATSIIKTQLRN 60
           MFVGLTSIGD SQKMV  AKDKVYPLVYRLLTLALILPVTTATV+  FSA SIIKTQ R 
Sbjct: 212 MFVGLTSIGDFSQKMVITAKDKVYPLVYRLLTLALILPVTTATVKRIFSAMSIIKTQFRT 271

Query: 61  RMEDQWMNDCLIAYIERDLFDKIDNEAIMYQFQNMKSRRGQL 103
           RM+DQWMNDCL+AYIERDLFDKIDNEAIMY+FQNMKSRRGQL
Sbjct: 272 RMKDQWMNDCLVAYIERDLFDKIDNEAIMYRFQNMKSRRGQL 313

[Close]

BLAST of Cmc12g0328021 vs. ExPASy TrEMBL
Match: A0A5D3BMQ7 (Copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00190 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.9e-34
Identity = 80/86 (93.02%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1   MFVGLTSIGDLSQKMVTIAKDKVYPLVYRLLTLALILPVTTATVESTFSATSIIKTQLRN 60
           MFVGLTSIGDLSQKMV  AKDKVYPLVYRLLTLALILPVT ATVE TFSA SIIKTQLRN
Sbjct: 167 MFVGLTSIGDLSQKMVITAKDKVYPLVYRLLTLALILPVTMATVERTFSAMSIIKTQLRN 226

Query: 61  RMEDQWMNDCLIAYIERDLFDKIDNE 87
           RMEDQWMNDCL+AYIERDLFDKIDNE
Sbjct: 227 RMEDQWMNDCLVAYIERDLFDKIDNE 252

[Close]

BLAST of Cmc12g0328021 vs. ExPASy TrEMBL
Match: A0A5A7VCQ2 (Dimer_Tnp_hAT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00160 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.3e-30
Identity = 70/101 (69.31%), Postives = 85/101 (84.16%), Query Frame = 0


Query: 2   FVGLTSIGDLSQKMVTIAKDKVYPLVYRLLTLALILPVTTATVESTFSATSIIKTQLRNR 61
           FV L SIGDL+ KMV   +DKVY LVY+LLTLALILPV T T+E TFSA +++KT+LRNR
Sbjct: 52  FVELKSIGDLAVKMVVTKRDKVYLLVYQLLTLALILPVATVTIERTFSAMNVVKTRLRNR 111

Query: 62  MEDQWMNDCLIAYIERDLFDKIDNEAIMYQFQNMKSRRGQL 103
           + DQWMNDCLIAYIE+DL DK+DN+ IM +FQ MK+R+GQL
Sbjct: 112 IGDQWMNDCLIAYIEKDLLDKLDNKLIMDRFQRMKTRKGQL 152

[Close]

BLAST of Cmc12g0328021 vs. ExPASy TrEMBL
Match: A0A443P243 (Dimer_Tnp_hAT domain-containing protein/DUF4371 domain-containing protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01372400 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 9.1e-29
Identity = 67/101 (66.34%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 2   FVGLTSIGDLSQKMVTIAKDKVYPLVYRLLTLALILPVTTATVESTFSATSIIKTQLRNR 61
           FVG+  IG L+QKMV   +D VYPL+Y LL LAL LPV TATVE  F A  I+K +LRN+
Sbjct: 599 FVGVKGIGGLAQKMVETERDIVYPLIYLLLKLALTLPVATATVERVFPAMKIVKNRLRNQ 658

Query: 62  MEDQWMNDCLIAYIERDLFDKIDNEAIMYQFQNMKSRRGQL 103
           MED+WMNDCL+AYIE+D+F+ ID+EAIM +FQNMK+RRGQL
Sbjct: 659 MEDEWMNDCLLAYIEKDIFNSIDDEAIMQRFQNMKNRRGQL 699

[Close]

BLAST of Cmc12g0328021 vs. ExPASy TrEMBL
Match: A0A6P5TRY7 (uncharacterized protein LOC110770113 OS=Prunus avium OX=42229 GN=LOC110770113 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.5e-28
Identity = 67/101 (66.34%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 2   FVGLTSIGDLSQKMVTIAKDKVYPLVYRLLTLALILPVTTATVESTFSATSIIKTQLRNR 61
           F  L  I DL+QKMV   KDK+YPLVY LLTLALILPV TA+VE  FSA +I+K +LRNR
Sbjct: 316 FTELKGITDLAQKMVETNKDKIYPLVYLLLTLALILPVATASVERVFSAMNIVKNRLRNR 375

Query: 62  MEDQWMNDCLIAYIERDLFDKIDNEAIMYQFQNMKSRRGQL 103
           + D WMNDCL+AYIE+D+F+ ID+E +M +FQNMK+RRGQL
Sbjct: 376 IGDLWMNDCLVAYIEKDIFNSIDDEVVMQRFQNMKTRRGQL 416

[Close]

BLAST of Cmc12g0328021 vs. TAIR 10
Match: AT1G19260.1 (TTF-type zinc finger protein with HAT dimerisation domain )

HSP 1 Score: 95.5 bits (236), Expect = 2.6e-20
Identity = 48/101 (47.52%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 2   FVGLTSIGDLSQKMVTIAKDKVYPLVYRLLTLALILPVTTATVESTFSATSIIKTQLRNR 61
           F  L  +GDL++ MV   K   +PLVYRLL ++LILPV TATVE  FSA + +KT LRNR
Sbjct: 669 FTDLKCLGDLARVMVETRKHLSHPLVYRLLKVSLILPVATATVERCFSAMNFVKTTLRNR 728

Query: 62  MEDQWMNDCLIAYIERDLFDKIDNEAIMYQFQNMKSRRGQL 103
           + D +++DCL+ +IE+   + + NE+++ +FQ+M  RR  L
Sbjct: 729 IGDMFLSDCLVCFIEKQALNTVTNESVIKRFQDMSERRVHL 769

[Close]

BLAST of Cmc12g0328021 vs. TAIR 10
Match: AT3G29765.1 (General transcription factor 2-related zinc finger protein )

HSP 1 Score: 93.6 bits (231), Expect = 9.9e-20
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 2   FVGLTSIGDLSQKMVTIAKDKVYPLVYRLLTLALILPVTTATVESTFSATSIIKTQLRNR 61
           F  L  +GDL++ MV   K   +PLVYRLL L+LILPV TATV   FSA + +KT LRNR
Sbjct: 436 FTDLEHLGDLARVMVETRKHLSHPLVYRLLKLSLILPVATATVVRCFSAMNFVKTTLRNR 495

Query: 62  MEDQWMNDCLIAYIERDLFDKIDNEAIMYQFQNMKSRRGQL 103
             D +++DCL+ +IE+ + + + NE+++ +FQ+M  RR  L
Sbjct: 496 FGDVFLSDCLVCFIEKQVLNTVTNESVIKRFQDMSERRVHL 536

[Close]

BLAST of Cmc12g0328021 vs. TAIR 10
Match: AT2G06541.1 (TTF-type zinc finger protein with HAT dimerisation domain )

HSP 1 Score: 90.5 bits (223), Expect = 8.4e-19
Identity = 45/97 (46.39%), Postives = 70/97 (72.16%), Query Frame = 0


Query: 2   FVGLTSIGDLSQKMVTIAKDKVYPLVYRLLTLALILPVTTATVESTFSATSIIKTQLRNR 61
           F  L S+GDL++ M+   K   +P VYRLL + L LP+ TATVE  FSAT ++KT LRNR
Sbjct: 493 FANLKSLGDLARVMIETRKHLSHPQVYRLLKVVLTLPIATATVERCFSAT-VVKTTLRNR 552

Query: 62  MEDQWMNDCLIAYIERDLFDKIDNEAIMYQFQNMKSR 99
           + DQ++ND ++  ++R+LFD + N+ ++ +FQ+M++R
Sbjct: 553 ISDQFLNDYVVCLVKRELFDTVINKVVIKRFQSMENR 588

[Close]

BLAST of Cmc12g0328021 vs. TAIR 10
Match: AT2G06541.2 (TTF-type zinc finger protein with HAT dimerisation domain )

HSP 1 Score: 90.5 bits (223), Expect = 8.4e-19
Identity = 45/97 (46.39%), Postives = 70/97 (72.16%), Query Frame = 0


Query: 2   FVGLTSIGDLSQKMVTIAKDKVYPLVYRLLTLALILPVTTATVESTFSATSIIKTQLRNR 61
           F  L S+GDL++ M+   K   +P VYRLL + L LP+ TATVE  FSAT ++KT LRNR
Sbjct: 465 FANLKSLGDLARVMIETRKHLSHPQVYRLLKVVLTLPIATATVERCFSAT-VVKTTLRNR 524

Query: 62  MEDQWMNDCLIAYIERDLFDKIDNEAIMYQFQNMKSR 99
           + DQ++ND ++  ++R+LFD + N+ ++ +FQ+M++R
Sbjct: 525 ISDQFLNDYVVCLVKRELFDTVINKVVIKRFQSMENR 560

[Close]

BLAST of Cmc12g0328021 vs. TAIR 10
Match: AT4G09660.1 (CONTAINS InterPro DOMAIN/s: Zinc finger, TTF-type (InterPro:IPR006580); BEST Arabidopsis thaliana protein match is: TTF-type zinc finger protein with HAT dimerisation domain (TAIR:AT1G19260.1); Has 839 Blast hits to 796 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 438; Fungi - 0; Plants - 401; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 9.6e-07
Identity = 29/49 (59.18%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 2   FVGLTSIGDLSQKMVTIAKDKVYPLVYRLLTLALILPVTTATVESTFSA 51
           F  L   GDL++ MV   K   +PLVYRLL L+LILPV TATVE  FSA
Sbjct: 613 FTDLKCFGDLARVMVETRKHLSHPLVYRLLKLSLILPVATATVERCFSA 661

The following BLAST results are available for this feature:

BLAST of Cmc12g0328021 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449194.1	2.1e-40	88.24	PREDICTED: uncharacterized protein LOC103491145 [Cucumis melo]	[more]
TYK00355.1	3.9e-34	93.02	copia-type polyprotein [Cucumis melo var. makuwa]	[more]
KAA0066112.1	1.3e-29	69.31	Dimer_Tnp_hAT domain-containing protein [Cucumis melo var. makuwa] >TYK15151.1 D...	[more]
XP_030487038.1	2.2e-29	68.32	zinc finger MYM-type protein 1-like [Cannabis sativa]	[more]
XP_030498012.1	2.9e-29	67.33	zinc finger MYM-type protein 1-like [Cannabis sativa]	[more]

BLAST of Cmc12g0328021 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc12g0328021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BM43	1.0e-40	88.24	uncharacterized protein LOC103491145 OS=Cucumis melo OX=3656 GN=LOC103491145 PE=...	[more]
A0A5D3BMQ7	1.9e-34	93.02	Copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A5A7VCQ2	6.3e-30	69.31	Dimer_Tnp_hAT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A443P243	9.1e-29	66.34	Dimer_Tnp_hAT domain-containing protein/DUF4371 domain-containing protein OS=Cin...	[more]
A0A6P5TRY7	1.5e-28	66.34	uncharacterized protein LOC110770113 OS=Prunus avium OX=42229 GN=LOC110770113 PE...	[more]

BLAST of Cmc12g0328021 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19260.1	2.6e-20	47.52	TTF-type zinc finger protein with HAT dimerisation domain	[more]
AT3G29765.1	9.9e-20	47.52	General transcription factor 2-related zinc finger protein	[more]
AT2G06541.1	8.4e-19	46.39	TTF-type zinc finger protein with HAT dimerisation domain	[more]
AT2G06541.2	8.4e-19	46.39	TTF-type zinc finger protein with HAT dimerisation domain	[more]
AT4G09660.1	9.6e-07	59.18	CONTAINS InterPro DOMAIN/s: Zinc finger, TTF-type (InterPro:IPR006580); BEST Ara...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008906	HAT, C-terminal dimerisation domain	PFAM	PF05699	Dimer_Tnp_hAT	coord: 21..79 e-value: 9.2E-11 score: 41.4
None	No IPR available	PANTHER	PTHR11697:SF107	TRANSCRIPTION FACTOR-LIKE ZINC FINGER PROTEIN, PUTATIVE-RELATED	coord: 2..93
None	No IPR available	PANTHER	PTHR11697	GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN	coord: 2..93
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 20..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0328021.1	Cmc12g0328021.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046983	protein dimerization activity