Cmc12g0326971 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0326971
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr12: 17780905 .. 17781546 (+)
RNA-Seq Expression	Cmc12g0326971
Synteny	Cmc12g0326971

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGTTCAATGATGAATTACACTCAATTGCCTAGCTCGTTTTGGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAACAATGTTCCCTCGATGAGTATTTCTGAAACACCTTTCGAGTTATGGAGAGGACGTAAACCTAGTTTAAGTCATTTCAGAATTTGGGGTTGTCCAGCACACGTATTAGTGACAAATCCCAAGAAGTTGGAACCTCGTTCAAGGTTATGCCAATTTGTTGGTTACCCTAAAGAGAATAGAGTGTTTGTATTGACAAATGCTACTTTCTTGGAAGAAGACCACATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTGATGAATCAACAAGGGTTGTTGATGAAGTTGGTCCCTCATCAAGAGTTGATGAAACCACCACATCAGGTCAATCTCATCCTTCTCAATCGTTGAGAATGCCTCGATGCAGTGGGAGGATTGTATCACAACCTAACCGTTATTTGGGTTTAACTGAAACTCAGGTTGTCATACCAGATGATGGTGTTGAGGATCCATTGTTCTATAAACAGGCAATGAATGATGTAGATAAAGACCAATTGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTACTTCAATTCAGTGTAG

mRNA sequence

ATGGTTCGTTCAATGATGAATTACACTCAATTGCCTAGCTCGTTTTGGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAACAATGTTCCCTCGATGAGTATTTCTGAAACACCTTTCGAGTTATGGAGAGGACGTAAACCTAGTTTAAGTCATTTCAGAATTTGGGGTTGTCCAGCACACGTATTAGTGACAAATCCCAAGAAGTTGGAACCTCGTTCAAGGTTATGCCAATTTGTTGGTTACCCTAAAGAGAATAGAGTGTTTGTATTGACAAATGCTACTTTCTTGGAAGAAGACCACATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTGATGAATCAACAAGGGTTGTTGATGAAGTTGGTCCCTCATCAAGAGTTGATGAAACCACCACATCAGGTCAATCTCATCCTTCTCAATCGTTGAGAATGCCTCGATGCAGTGGGAGGATTGTATCACAACCTAACCGTTATTTGGGTTTAACTGAAACTCAGGTTGTCATACCAGATGATGGTGTTGAGGATCCATTGTTCTATAAACAGGCAATGAATGATGTAGATAAAGACCAATTGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTACTTCAATTCAGTGTAG

Coding sequence (CDS)

ATGGTTCGTTCAATGATGAATTACACTCAATTGCCTAGCTCGTTTTGGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAACAATGTTCCCTCGATGAGTATTTCTGAAACACCTTTCGAGTTATGGAGAGGACGTAAACCTAGTTTAAGTCATTTCAGAATTTGGGGTTGTCCAGCACACGTATTAGTGACAAATCCCAAGAAGTTGGAACCTCGTTCAAGGTTATGCCAATTTGTTGGTTACCCTAAAGAGAATAGAGTGTTTGTATTGACAAATGCTACTTTCTTGGAAGAAGACCACATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTGATGAATCAACAAGGGTTGTTGATGAAGTTGGTCCCTCATCAAGAGTTGATGAAACCACCACATCAGGTCAATCTCATCCTTCTCAATCGTTGAGAATGCCTCGATGCAGTGGGAGGATTGTATCACAACCTAACCGTTATTTGGGTTTAACTGAAACTCAGGTTGTCATACCAGATGATGGTGTTGAGGATCCATTGTTCTATAAACAGGCAATGAATGATGTAGATAAAGACCAATTGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTACTTCAATTCAGTGTAG

Protein sequence

MVRSMMNYTQLPSSFWGYAVETAVHILNNVPSMSISETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKENRVFVLTNATFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRCSGRIVSQPNRYLGLTETQVVIPDDGVEDPLFYKQAMNDVDKDQLVKAMDLEMESMYFNSV

Homology

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BLAST of Cmc12g0326971 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 406.0 bits (1042), Expect = 2.0e-109
Identity = 202/224 (90.18%), Postives = 207/224 (92.41%), Query Frame = 0


Query: 1   MVRSMMNYTQLPSSFWGYAVETAVHILNNVPSMSISETPFELWRGRKPSLSHFRIWGCPA 60
           MVRSMM+Y QLPSSFWGYAVETAVHILNNVPS S+SETPFELWRGRKPSLSHFRIWGCPA
Sbjct: 521 MVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPA 580

Query: 61  HVLVTNPKKLEPRSRLCQFVGYPK-----------ENRVFVLTNATFLEEDHMRDHKPRS 120
           HVLVTNPKKLEPRSRLCQFVGYPK           ENRVFV TNATFLEEDHMR+HKPRS
Sbjct: 581 HVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRS 640

Query: 121 KLVLNEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRCSGRIVSQPNRYLGLTE 180
           KLVL+EATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPR SGR+VSQPNRYLGLTE
Sbjct: 641 KLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTE 700

Query: 181 TQVVIPDDGVEDPLFYKQAMNDVDKDQLVKAMDLEMESMYFNSV 214
           TQVVIPDDGVEDPL YKQAMNDVDKDQ VKAMDLEMESMYFNSV
Sbjct: 701 TQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV 744

[Close]

BLAST of Cmc12g0326971 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 406.0 bits (1042), Expect = 2.0e-109
Identity = 202/224 (90.18%), Postives = 207/224 (92.41%), Query Frame = 0


Query: 1   MVRSMMNYTQLPSSFWGYAVETAVHILNNVPSMSISETPFELWRGRKPSLSHFRIWGCPA 60
           MVRSMM+Y QLPSSFWGYAVETAVHILNNVPS S+SETPFELWRGRKPSLSHFRIWGCPA
Sbjct: 521 MVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPA 580

Query: 61  HVLVTNPKKLEPRSRLCQFVGY-----------PKENRVFVLTNATFLEEDHMRDHKPRS 120
           HVLVTNPKKLEPRSRLCQFVGY           PKENRVFV TNATFLEEDHMR+HKPRS
Sbjct: 581 HVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPKENRVFVSTNATFLEEDHMRNHKPRS 640

Query: 121 KLVLNEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRCSGRIVSQPNRYLGLTE 180
           KLVL+EATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPR SGR+VSQPNRYLGLTE
Sbjct: 641 KLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTE 700

Query: 181 TQVVIPDDGVEDPLFYKQAMNDVDKDQLVKAMDLEMESMYFNSV 214
           TQVVIPDDGVEDPL YKQAMNDVDKDQ VKAMDLEMESMYFNSV
Sbjct: 701 TQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV 744

[Close]

BLAST of Cmc12g0326971 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 406.0 bits (1042), Expect = 2.0e-109
Identity = 202/224 (90.18%), Postives = 207/224 (92.41%), Query Frame = 0


Query: 1   MVRSMMNYTQLPSSFWGYAVETAVHILNNVPSMSISETPFELWRGRKPSLSHFRIWGCPA 60
           MVRSMM+Y QLPSSFWGYAVETAVHILNNVPS S+SETPFELWRGRKPSLSHFRIWGCPA
Sbjct: 395 MVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPA 454

Query: 61  HVLVTNPKKLEPRSRLCQFVGYPK-----------ENRVFVLTNATFLEEDHMRDHKPRS 120
           HVLVTNPKKLEPRSRLCQFVGYPK           ENRVFV TNATFLEEDHMR+HKPRS
Sbjct: 455 HVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRS 514

Query: 121 KLVLNEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRCSGRIVSQPNRYLGLTE 180
           KLVL+EATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPR SGR+VSQPNRYLGLTE
Sbjct: 515 KLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTE 574

Query: 181 TQVVIPDDGVEDPLFYKQAMNDVDKDQLVKAMDLEMESMYFNSV 214
           TQVVIPDDGVEDPL YKQAMNDVDKDQ VKAMDLEMESMYFNSV
Sbjct: 575 TQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV 618

[Close]

BLAST of Cmc12g0326971 vs. NCBI nr
Match: TYK02840.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 406.0 bits (1042), Expect = 2.0e-109
Identity = 202/224 (90.18%), Postives = 207/224 (92.41%), Query Frame = 0


Query: 1   MVRSMMNYTQLPSSFWGYAVETAVHILNNVPSMSISETPFELWRGRKPSLSHFRIWGCPA 60
           MVRSMM+Y QLPSSFWGYAVETAVHILNNVPS S+SETPFELWRGRKPSLSHFRIWGCPA
Sbjct: 395 MVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPA 454

Query: 61  HVLVTNPKKLEPRSRLCQFVGYPK-----------ENRVFVLTNATFLEEDHMRDHKPRS 120
           HVLVTNPKKLEPRSRLCQFVGYPK           ENRVFV TNATFLEEDHMR+HKPRS
Sbjct: 455 HVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRS 514

Query: 121 KLVLNEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRCSGRIVSQPNRYLGLTE 180
           KLVL+EATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPR SGR+VSQPNRYLGLTE
Sbjct: 515 KLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTE 574

Query: 181 TQVVIPDDGVEDPLFYKQAMNDVDKDQLVKAMDLEMESMYFNSV 214
           TQVVIPDDGVEDPL YKQAMNDVDKDQ VKAMDLEMESMYFNSV
Sbjct: 575 TQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV 618

[Close]

BLAST of Cmc12g0326971 vs. NCBI nr
Match: KAA0049915.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 405.6 bits (1041), Expect = 2.6e-109
Identity = 200/224 (89.29%), Postives = 205/224 (91.52%), Query Frame = 0


Query: 1   MVRSMMNYTQLPSSFWGYAVETAVHILNNVPSMSISETPFELWRGRKPSLSHFRIWGCPA 60
           MVRSMM+Y QLPSSFWGYAVETAVHILNNVPS S+SETPFELWRGRKPSLS+FRIWGCPA
Sbjct: 32  MVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSYFRIWGCPA 91

Query: 61  HVLVTNPKKLEPRSRLCQFVGYPK-----------ENRVFVLTNATFLEEDHMRDHKPRS 120
           HVLVTNPK LEPRSRLCQFVGYPK           ENRVFV TNATFLEEDHMRDHKPRS
Sbjct: 92  HVLVTNPKNLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRDHKPRS 151

Query: 121 KLVLNEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRCSGRIVSQPNRYLGLTE 180
           KLVLNE TDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRCSGR+VSQPNRYLGLTE
Sbjct: 152 KLVLNEVTDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRCSGRVVSQPNRYLGLTE 211

Query: 181 TQVVIPDDGVEDPLFYKQAMNDVDKDQLVKAMDLEMESMYFNSV 214
           TQVVIPDDGVEDPL YK AMNDVDKDQ VK+MDLEMESMYFNSV
Sbjct: 212 TQVVIPDDGVEDPLSYKHAMNDVDKDQWVKSMDLEMESMYFNSV 255

[Close]

BLAST of Cmc12g0326971 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.0e-15
Identity = 73/250 (29.20%), Postives = 114/250 (45.60%), Query Frame = 0


Query: 2   VRSMMNYTQLPSSFWGYAVETAVHILNNVPSMSIS-ETPFELWRGRKPSLSHFRIWGCP- 61
           VRSM+   +LP SFWG AV+TA +++N  PS+ ++ E P  +W  ++ S SH +++GC  
Sbjct: 596 VRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRA 655

Query: 62  -AHVLVTNPKKLEPRSRLCQFVGY-----------PKENRVFVLTNATFLEEDHM----R 121
            AHV      KL+ +S  C F+GY           P + +V    +  F E +       
Sbjct: 656 FAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADM 715

Query: 122 DHKPRSKLVLNEATDESTRVVDEVGPSSRVDETTTSGQ-------------------SHP 181
             K ++ ++ N  T  ST   +     S  DE +  G+                    HP
Sbjct: 716 SEKVKNGIIPNFVTIPSTS-NNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHP 775

Query: 182 SQSLRMP---RCSGRIVSQPNRYLGLTETQVVIPDDGVEDPLFYKQAMNDVDKDQLVKAM 212
           +Q        R S R   +  RY   +   V+I DD   +P   K+ ++  +K+QL+KAM
Sbjct: 776 TQGEEQHQPLRRSERPRVESRRY--PSTEYVLISDD--REPESLKEVLSHPEKNQLMKAM 835

[Close]

BLAST of Cmc12g0326971 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-12
Identity = 37/112 (33.04%), Postives = 63/112 (56.25%), Query Frame = 0


Query: 3   RSMMNYTQLPSSFWGYAVETAVHILNNVPSMSI---SETPFELWRGRKPSLSHFRIWGCP 62
           R+M++  +L  SFWG AV TA +++N +PS ++   S+TP+E+W  +KP L H R++G  
Sbjct: 597 RTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGAT 656

Query: 63  AHVLVTNPK-KLEPRSRLCQFVGYPKE--------NRVFVLTNATFLEEDHM 103
            +V + N + K + +S    FVGY           N  F++     ++E +M
Sbjct: 657 VYVHIKNKQGKFDDKSFKSIFVGYEPNGFKLWDAVNEKFIVARDVVVDETNM 708

[Close]

BLAST of Cmc12g0326971 vs. ExPASy Swiss-Prot
Match: P92512 (Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 GN=AtMg00710 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.2e-07
Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 2  VRSMMNYTQLPSSFWGYAVETAVHILNNVPSMSIS-ETPFELWRGRKPSLSHFRIWGCPA 61
          VRSM+    LP +F   A  TAVHI+N  PS +I+   P E+W    P+ S+ R +GC A
Sbjct: 9  VRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLRRFGCVA 68

Query: 62 HVLVTNPKKLEPRSRLCQFVGYPKENRV 89
          ++   +  KL+PR++  +  G    NR+
Sbjct: 69 YI-HCDEGKLKPRAKKGEEKGSYLINRI 95

[Close]

BLAST of Cmc12g0326971 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 9.8e-110
Identity = 202/224 (90.18%), Postives = 207/224 (92.41%), Query Frame = 0


Query: 1   MVRSMMNYTQLPSSFWGYAVETAVHILNNVPSMSISETPFELWRGRKPSLSHFRIWGCPA 60
           MVRSMM+Y QLPSSFWGYAVETAVHILNNVPS S+SETPFELWRGRKPSLSHFRIWGCPA
Sbjct: 521 MVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPA 580

Query: 61  HVLVTNPKKLEPRSRLCQFVGYPK-----------ENRVFVLTNATFLEEDHMRDHKPRS 120
           HVLVTNPKKLEPRSRLCQFVGYPK           ENRVFV TNATFLEEDHMR+HKPRS
Sbjct: 581 HVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRS 640

Query: 121 KLVLNEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRCSGRIVSQPNRYLGLTE 180
           KLVL+EATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPR SGR+VSQPNRYLGLTE
Sbjct: 641 KLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTE 700

Query: 181 TQVVIPDDGVEDPLFYKQAMNDVDKDQLVKAMDLEMESMYFNSV 214
           TQVVIPDDGVEDPL YKQAMNDVDKDQ VKAMDLEMESMYFNSV
Sbjct: 701 TQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV 744

[Close]

BLAST of Cmc12g0326971 vs. ExPASy TrEMBL
Match: A0A5D3BUN8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00360 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 9.8e-110
Identity = 202/224 (90.18%), Postives = 207/224 (92.41%), Query Frame = 0


Query: 1   MVRSMMNYTQLPSSFWGYAVETAVHILNNVPSMSISETPFELWRGRKPSLSHFRIWGCPA 60
           MVRSMM+Y QLPSSFWGYAVETAVHILNNVPS S+SETPFELWRGRKPSLSHFRIWGCPA
Sbjct: 395 MVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPA 454

Query: 61  HVLVTNPKKLEPRSRLCQFVGYPK-----------ENRVFVLTNATFLEEDHMRDHKPRS 120
           HVLVTNPKKLEPRSRLCQFVGYPK           ENRVFV TNATFLEEDHMR+HKPRS
Sbjct: 455 HVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRS 514

Query: 121 KLVLNEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRCSGRIVSQPNRYLGLTE 180
           KLVL+EATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPR SGR+VSQPNRYLGLTE
Sbjct: 515 KLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTE 574

Query: 181 TQVVIPDDGVEDPLFYKQAMNDVDKDQLVKAMDLEMESMYFNSV 214
           TQVVIPDDGVEDPL YKQAMNDVDKDQ VKAMDLEMESMYFNSV
Sbjct: 575 TQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV 618

[Close]

BLAST of Cmc12g0326971 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 9.8e-110
Identity = 202/224 (90.18%), Postives = 207/224 (92.41%), Query Frame = 0


Query: 1   MVRSMMNYTQLPSSFWGYAVETAVHILNNVPSMSISETPFELWRGRKPSLSHFRIWGCPA 60
           MVRSMM+Y QLPSSFWGYAVETAVHILNNVPS S+SETPFELWRGRKPSLSHFRIWGCPA
Sbjct: 395 MVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPA 454

Query: 61  HVLVTNPKKLEPRSRLCQFVGYPK-----------ENRVFVLTNATFLEEDHMRDHKPRS 120
           HVLVTNPKKLEPRSRLCQFVGYPK           ENRVFV TNATFLEEDHMR+HKPRS
Sbjct: 455 HVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRS 514

Query: 121 KLVLNEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRCSGRIVSQPNRYLGLTE 180
           KLVL+EATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPR SGR+VSQPNRYLGLTE
Sbjct: 515 KLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTE 574

Query: 181 TQVVIPDDGVEDPLFYKQAMNDVDKDQLVKAMDLEMESMYFNSV 214
           TQVVIPDDGVEDPL YKQAMNDVDKDQ VKAMDLEMESMYFNSV
Sbjct: 575 TQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV 618

[Close]

BLAST of Cmc12g0326971 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 9.8e-110
Identity = 202/224 (90.18%), Postives = 207/224 (92.41%), Query Frame = 0


Query: 1   MVRSMMNYTQLPSSFWGYAVETAVHILNNVPSMSISETPFELWRGRKPSLSHFRIWGCPA 60
           MVRSMM+Y QLPSSFWGYAVETAVHILNNVPS S+SETPFELWRGRKPSLSHFRIWGCPA
Sbjct: 521 MVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPA 580

Query: 61  HVLVTNPKKLEPRSRLCQFVGY-----------PKENRVFVLTNATFLEEDHMRDHKPRS 120
           HVLVTNPKKLEPRSRLCQFVGY           PKENRVFV TNATFLEEDHMR+HKPRS
Sbjct: 581 HVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPKENRVFVSTNATFLEEDHMRNHKPRS 640

Query: 121 KLVLNEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRCSGRIVSQPNRYLGLTE 180
           KLVL+EATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPR SGR+VSQPNRYLGLTE
Sbjct: 641 KLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTE 700

Query: 181 TQVVIPDDGVEDPLFYKQAMNDVDKDQLVKAMDLEMESMYFNSV 214
           TQVVIPDDGVEDPL YKQAMNDVDKDQ VKAMDLEMESMYFNSV
Sbjct: 701 TQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV 744

[Close]

BLAST of Cmc12g0326971 vs. ExPASy TrEMBL
Match: A0A5A7U8G7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00720 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.3e-109
Identity = 200/224 (89.29%), Postives = 205/224 (91.52%), Query Frame = 0


Query: 1   MVRSMMNYTQLPSSFWGYAVETAVHILNNVPSMSISETPFELWRGRKPSLSHFRIWGCPA 60
           MVRSMM+Y QLPSSFWGYAVETAVHILNNVPS S+SETPFELWRGRKPSLS+FRIWGCPA
Sbjct: 32  MVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSYFRIWGCPA 91

Query: 61  HVLVTNPKKLEPRSRLCQFVGYPK-----------ENRVFVLTNATFLEEDHMRDHKPRS 120
           HVLVTNPK LEPRSRLCQFVGYPK           ENRVFV TNATFLEEDHMRDHKPRS
Sbjct: 92  HVLVTNPKNLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRDHKPRS 151

Query: 121 KLVLNEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRCSGRIVSQPNRYLGLTE 180
           KLVLNE TDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRCSGR+VSQPNRYLGLTE
Sbjct: 152 KLVLNEVTDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRCSGRVVSQPNRYLGLTE 211

Query: 181 TQVVIPDDGVEDPLFYKQAMNDVDKDQLVKAMDLEMESMYFNSV 214
           TQVVIPDDGVEDPL YK AMNDVDKDQ VK+MDLEMESMYFNSV
Sbjct: 212 TQVVIPDDGVEDPLSYKHAMNDVDKDQWVKSMDLEMESMYFNSV 255

[Close]

BLAST of Cmc12g0326971 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-08
Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 2  VRSMMNYTQLPSSFWGYAVETAVHILNNVPSMSIS-ETPFELWRGRKPSLSHFRIWGCPA 61
          VRSM+    LP +F   A  TAVHI+N  PS +I+   P E+W    P+ S+ R +GC A
Sbjct: 9  VRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLRRFGCVA 68

Query: 62 HVLVTNPKKLEPRSRLCQFVGYPKENRV 89
          ++   +  KL+PR++  +  G    NR+
Sbjct: 69 YI-HCDEGKLKPRAKKGEEKGSYLINRI 95

The following BLAST results are available for this feature:

BLAST of Cmc12g0326971 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025945.1	2.0e-109	90.18	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0035907.1	2.0e-109	90.18	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0059226.1	2.0e-109	90.18	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK02840.1	2.0e-109	90.18	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0049915.1	2.6e-109	89.29	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc12g0326971 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.0e-15	29.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.4e-12	33.04	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92512	5.2e-07	37.50	Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc12g0326971 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	9.8e-110	90.18	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5D3BUN8	9.8e-110	90.18	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G0036...	[more]
A0A5A7UYE8	9.8e-110	90.18	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5A7T2V9	9.8e-110	90.18	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5A7U8G7	1.3e-109	89.29	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00720...	[more]

BLAST of Cmc12g0326971 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00710.1	3.7e-08	37.50	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..56 e-value: 1.8E-7 score: 32.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..151
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 5..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0326971.1	Cmc12g0326971.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding