Cmc12g0323471 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0323471
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
LocationCMiso1.1chr12: 12378838 .. 12379323 (+)
RNA-Seq ExpressionCmc12g0323471
SyntenyCmc12g0323471
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGCTAATCTATGTTATACTTCAGCCATTGAACCTACATCTATTGATGCTGCTCTTAAAGATGAATATTGGATAAATGCAATGCAAGAAGAGTTACTTCAATTTAAGCATAACAATGTATGGACCCTAGTTCCTAAACCTGAAGGGGCAAATATTATAGGAGCCAAGTGGATCTATAAAAATAAGACTGATGAACCAGGTTATGTAACAAGGAGTAAGGCACGACTGGTGGCTCAGGGTTATGCACAAGTCGAAAGAATTGATTTTGATGAAACGTTTGCACTGGTTGCTAGACTCAAAGCTATATGCCTCTTGCTCGGTATATCTTGCATCCAAAAATTTAAATTATATCAGATGGATGTCAAGAGTGCCTTTCTGAATTGTTATTTGAATGAAGAAATCTATGCTGCGCAATCTAAAGGGTTTGTCGATTCTGAATTTCCCAGCATGTGTATAAGCTTAATAAAGCTTTATATGGGCTAA

mRNA sequence

ATGATTGCTAATCTATGTTATACTTCAGCCATTGAACCTACATCTATTGATGCTGCTCTTAAAGATGAATATTGGATAAATGCAATGCAAGAAGAGTTACTTCAATTTAAGCATAACAATGTATGGACCCTAGTTCCTAAACCTGAAGGGGCAAATATTATAGGAGCCAAGTGGATCTATAAAAATAAGACTGATGAACCAGGTTATGTAACAAGGAGTAAGGCACGACTGGTGGCTCAGGGTTATGCACAAGTCGAAAGAATTGATTTTGATGAAACGTTTGCACTGGTTGCTAGACTCAAAGCTATATGCCTCTTGCTCGGTATATCTTGCATCCAAAAATTTAAATTATATCAGATGGATGTCAAGAGTGCCTTTCTGAATTGTTATTTGAATGAAGAAATCTATGCTGCGCAATCTAAAGGGTTTGTCGATTCTGAATTTCCCAGCATGTGTATAAGCTTAATAAAGCTTTATATGGGCTAA

Coding sequence (CDS)

ATGATTGCTAATCTATGTTATACTTCAGCCATTGAACCTACATCTATTGATGCTGCTCTTAAAGATGAATATTGGATAAATGCAATGCAAGAAGAGTTACTTCAATTTAAGCATAACAATGTATGGACCCTAGTTCCTAAACCTGAAGGGGCAAATATTATAGGAGCCAAGTGGATCTATAAAAATAAGACTGATGAACCAGGTTATGTAACAAGGAGTAAGGCACGACTGGTGGCTCAGGGTTATGCACAAGTCGAAAGAATTGATTTTGATGAAACGTTTGCACTGGTTGCTAGACTCAAAGCTATATGCCTCTTGCTCGGTATATCTTGCATCCAAAAATTTAAATTATATCAGATGGATGTCAAGAGTGCCTTTCTGAATTGTTATTTGAATGAAGAAATCTATGCTGCGCAATCTAAAGGGTTTGTCGATTCTGAATTTCCCAGCATGTGTATAAGCTTAATAAAGCTTTATATGGGCTAA

Protein sequence

MIANLCYTSAIEPTSIDAALKDEYWINAMQEELLQFKHNNVWTLVPKPEGANIIGAKWIYKNKTDEPGYVTRSKARLVAQGYAQVERIDFDETFALVARLKAICLLLGISCIQKFKLYQMDVKSAFLNCYLNEEIYAAQSKGFVDSEFPSMCISLIKLYMG
Homology
BLAST of Cmc12g0323471 vs. NCBI nr
Match: KAA0037650.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK22795.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 253.8 bits (647), Expect = 9.7e-64
Identity = 121/161 (75.16%), Postives = 137/161 (85.09%), Query Frame = 0

Query: 1   MIANLCYTSAIEPTSIDAALKDEYWINAMQEELLQFKHNNVWTLVPKPEGANIIGAKWIY 60
           MIA+LCY SAIEPTS++ A KDEYWINAMQEELLQFK NNVWT+VPKP+GAN+IG KWI+
Sbjct: 102 MIADLCYVSAIEPTSVENAFKDEYWINAMQEELLQFKRNNVWTMVPKPDGANVIGTKWIF 161

Query: 61  KNKTDEPGYVTRSKARLVAQGYAQVERIDFDETFALVARLKAICLLLGISCIQKFKLYQM 120
           KNKTDE G + R+KARL+AQGYAQVE +DFDETFALVARL+AI LLL ISC +KFKL++M
Sbjct: 162 KNKTDESGSIIRNKARLIAQGYAQVEGVDFDETFALVARLEAIRLLLSISCFRKFKLFRM 221

Query: 121 DVKSAFLNCYLNEEIYAAQSKGFVDSEFPSMCISLIKLYMG 162
           DVKSAFLN YLNEE+Y AQ KGFVDSEFP     L K   G
Sbjct: 222 DVKSAFLNGYLNEEVYVAQPKGFVDSEFPQYVYKLNKALYG 262

BLAST of Cmc12g0323471 vs. NCBI nr
Match: KAA0036987.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK21218.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 250.0 bits (637), Expect = 1.4e-62
Identity = 121/157 (77.07%), Postives = 136/157 (86.62%), Query Frame = 0

Query: 1   MIANLCYTSAIEPTSIDAALKDEYWINAMQEELLQFKHNNVWTLVPKPEGANIIGAKWIY 60
           MI++LCYTSAIEP+ ID ALKDEYWIN MQEELLQFK NNVWTLVPKPEGANIIG KWI+
Sbjct: 1   MISDLCYTSAIEPSIIDVALKDEYWINVMQEELLQFKDNNVWTLVPKPEGANIIGTKWIF 60

Query: 61  KNKTDEPGYVTRSKARLVAQGYAQVERIDFDETFALVARLKAICLLLGISCIQKFKLYQM 120
           KNKTDE GYV R+KA LVAQGYAQVE +DF+E FA VA+L+AI LLLGISCI++F+LYQM
Sbjct: 61  KNKTDEAGYVMRNKALLVAQGYAQVEGVDFNEIFAPVAKLEAIRLLLGISCIRRFELYQM 120

Query: 121 DVKSAFLNCYLNEEIYAAQSKGFVDSEFPSMCISLIK 158
           DVKSAFLN YLNEE+Y AQ KGF+DS+FP     L K
Sbjct: 121 DVKSAFLNGYLNEEVYVAQPKGFIDSKFPQYVYKLNK 157

BLAST of Cmc12g0323471 vs. NCBI nr
Match: TYJ99674.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 248.4 bits (633), Expect = 4.1e-62
Identity = 120/161 (74.53%), Postives = 137/161 (85.09%), Query Frame = 0

Query: 1   MIANLCYTSAIEPTSIDAALKDEYWINAMQEELLQFKHNNVWTLVPKPEGANIIGAKWIY 60
           MI +LCYT AIE +SID ALKDEYWINAMQEELLQF+HNNVWTLVPKPEGANIIG KW++
Sbjct: 195 MIGDLCYTFAIEHSSIDVALKDEYWINAMQEELLQFRHNNVWTLVPKPEGANIIGTKWVF 254

Query: 61  KNKTDEPGYVTRSKARLVAQGYAQVERIDFDETFALVARLKAICLLLGISCIQKFKLYQM 120
           KNKTDE  YVTR+KAR VAQGYAQVE ++FDETFA VARL+AI LLLG+SCI++FKLYQM
Sbjct: 255 KNKTDEARYVTRNKARFVAQGYAQVEGVNFDETFAPVARLEAIRLLLGLSCIRRFKLYQM 314

Query: 121 DVKSAFLNCYLNEEIYAAQSKGFVDSEFPSMCISLIKLYMG 162
           +VKS FL+ YLNEE+Y AQ KGF  SEFP     L K++ G
Sbjct: 315 NVKSVFLSGYLNEEVYVAQPKGFFYSEFPQHVYKLNKVFYG 355

BLAST of Cmc12g0323471 vs. NCBI nr
Match: KAA0058253.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 247.7 bits (631), Expect = 7.0e-62
Identity = 120/149 (80.54%), Postives = 131/149 (87.92%), Query Frame = 0

Query: 1   MIANLCYTSAIEPTSIDAALKDEYWINAMQEELLQFKHNNVWTLVPKPEGANIIGAKWIY 60
           MIA+LCY  AIE TS +AALKDEYWINAMQEELL FK NNVWTLVPKP+ ANIIG KWI+
Sbjct: 103 MIADLCYALAIELTSFEAALKDEYWINAMQEELLPFKRNNVWTLVPKPDEANIIGTKWIF 162

Query: 61  KNKTDEPGYVTRSKARLVAQGYAQVERIDFDETFALVARLKAICLLLGISCIQKFKLYQM 120
           KNK DE G VTR+KARLVAQGYAQ+E +DFDETFA VARL+AICLLLGISCI+KFK YQM
Sbjct: 163 KNKIDESGCVTRNKARLVAQGYAQIEGVDFDETFAPVARLEAICLLLGISCIRKFKFYQM 222

Query: 121 DVKSAFLNCYLNEEIYAAQSKGFVDSEFP 150
           DVK AFLN YLNEE+Y AQ KGFVDS+FP
Sbjct: 223 DVKRAFLNGYLNEELYVAQPKGFVDSKFP 251

BLAST of Cmc12g0323471 vs. NCBI nr
Match: KAA0066164.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK15206.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 247.3 bits (630), Expect = 9.1e-62
Identity = 117/161 (72.67%), Postives = 136/161 (84.47%), Query Frame = 0

Query: 1   MIANLCYTSAIEPTSIDAALKDEYWINAMQEELLQFKHNNVWTLVPKPEGANIIGAKWIY 60
           M+A+LCY S +EP+++D+AL+DEYW+NAMQEELLQF+ NNVWTLV KPEG N+IG KW++
Sbjct: 551 MVADLCYISTVEPSTVDSALRDEYWLNAMQEELLQFRQNNVWTLVSKPEGVNVIGTKWVF 610

Query: 61  KNKTDEPGYVTRSKARLVAQGYAQVERIDFDETFALVARLKAICLLLGISCIQKFKLYQM 120
           KNKTDE G VT++KA+LVAQGY QVE IDFDETFA VARL+AI LLLGISCIQKFKLYQM
Sbjct: 611 KNKTDEAGCVTKNKAKLVAQGYTQVEGIDFDETFASVARLEAIRLLLGISCIQKFKLYQM 670

Query: 121 DVKSAFLNCYLNEEIYAAQSKGFVDSEFPSMCISLIKLYMG 162
           DVKSAFL+ YLNEE+Y AQ KGFVDSE P     L K   G
Sbjct: 671 DVKSAFLDGYLNEEVYVAQPKGFVDSEHPKHMYKLNKALYG 711

BLAST of Cmc12g0323471 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.8e-24
Identity = 58/151 (38.41%), Postives = 88/151 (58.28%), Query Frame = 0

Query: 12   EPTSIDAALKDEYWINAMQEELLQFKHNNVWTLVPKPEG-ANIIGAKWIYKNKTDEPGYV 71
            EP +   ALKDE W NAM  E+     N+ W LVP P     I+G +WI+  K +  G +
Sbjct: 955  EPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSL 1014

Query: 72   TRSKARLVAQGYAQVERIDFDETFALVARLKAICLLLGISCIQKFKLYQMDVKSAFLNCY 131
             R KARLVA+GY Q   +D+ ETF+ V +  +I ++LG++  + + + Q+DV +AFL   
Sbjct: 1015 NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1074

Query: 132  LNEEIYAAQSKGFVDSEFPSMCISLIKLYMG 162
            L +++Y +Q  GF+D + P+    L K   G
Sbjct: 1075 LTDDVYMSQPPGFIDKDRPNYVCKLRKALYG 1105

BLAST of Cmc12g0323471 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.6e-23
Identity = 57/151 (37.75%), Postives = 86/151 (56.95%), Query Frame = 0

Query: 12   EPTSIDAALKDEYWINAMQEELLQFKHNNVWTLV-PKPEGANIIGAKWIYKNKTDEPGYV 71
            EP +   A+KD+ W  AM  E+     N+ W LV P P    I+G +WI+  K +  G +
Sbjct: 938  EPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSL 997

Query: 72   TRSKARLVAQGYAQVERIDFDETFALVARLKAICLLLGISCIQKFKLYQMDVKSAFLNCY 131
             R KARLVA+GY Q   +D+ ETF+ V +  +I ++LG++  + + + Q+DV +AFL   
Sbjct: 998  NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1057

Query: 132  LNEEIYAAQSKGFVDSEFPSMCISLIKLYMG 162
            L +E+Y +Q  GFVD + P     L K   G
Sbjct: 1058 LTDEVYMSQPPGFVDKDRPDYVCRLRKAIYG 1088

BLAST of Cmc12g0323471 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 105.5 bits (262), Expect = 5.6e-22
Identity = 52/118 (44.07%), Postives = 74/118 (62.71%), Query Frame = 0

Query: 25   WINAMQEELLQFKHNNVWTLVPKPEGANIIGAKWIYKNKTDEPGYVTRSKARLVAQGYAQ 84
            W  A+  EL   K NN WT+  +PE  NI+ ++W++  K +E G   R KARLVA+G+ Q
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 85   VERIDFDETFALVARLKAICLLLGISCIQKFKLYQMDVKSAFLNCYLNEEIYAAQSKG 143
              +ID++ETFA VAR+ +   +L +      K++QMDVK+AFLN  L EEIY    +G
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG 1023

BLAST of Cmc12g0323471 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.8e-18
Identity = 51/135 (37.78%), Postives = 78/135 (57.78%), Query Frame = 0

Query: 12  EPTSIDAAL---KDEYWINAMQEELLQFKHNNVWTLVPKPEGANIIGAKWIYKNKTDEPG 71
           EP S+   L   +    + AMQEE+   + N  + LV  P+G   +  KW++K K D   
Sbjct: 810 EPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDC 869

Query: 72  YVTRSKARLVAQGYAQVERIDFDETFALVARLKAICLLLGISCIQKFKLYQMDVKSAFLN 131
            + R KARLV +G+ Q + IDFDE F+ V ++ +I  +L ++     ++ Q+DVK+AFL+
Sbjct: 870 KLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLH 929

Query: 132 CYLNEEIYAAQSKGF 144
             L EEIY  Q +GF
Sbjct: 930 GDLEEEIYMEQPEGF 944

BLAST of Cmc12g0323471 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-17
Identity = 46/99 (46.46%), Postives = 58/99 (58.59%), Query Frame = 0

Query: 12  EPTSIDAALKDEYWINAMQEELLQFKHNNVWTLVPKPEGANIIGAKWIYKNKTDEPGYVT 71
           EP S+  ALKD  W  AMQEEL     N  W LVP P   NI+G KW++K K    G + 
Sbjct: 27  EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86

Query: 72  RSKARLVAQGYAQVERIDFDETFALVARLKAICLLLGIS 111
           R KARLVA+G+ Q E I F ET++ V R   I  +L ++
Sbjct: 87  RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

BLAST of Cmc12g0323471 vs. ExPASy TrEMBL
Match: A0A5A7T2Q0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00330 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.7e-64
Identity = 121/161 (75.16%), Postives = 137/161 (85.09%), Query Frame = 0

Query: 1   MIANLCYTSAIEPTSIDAALKDEYWINAMQEELLQFKHNNVWTLVPKPEGANIIGAKWIY 60
           MIA+LCY SAIEPTS++ A KDEYWINAMQEELLQFK NNVWT+VPKP+GAN+IG KWI+
Sbjct: 102 MIADLCYVSAIEPTSVENAFKDEYWINAMQEELLQFKRNNVWTMVPKPDGANVIGTKWIF 161

Query: 61  KNKTDEPGYVTRSKARLVAQGYAQVERIDFDETFALVARLKAICLLLGISCIQKFKLYQM 120
           KNKTDE G + R+KARL+AQGYAQVE +DFDETFALVARL+AI LLL ISC +KFKL++M
Sbjct: 162 KNKTDESGSIIRNKARLIAQGYAQVEGVDFDETFALVARLEAIRLLLSISCFRKFKLFRM 221

Query: 121 DVKSAFLNCYLNEEIYAAQSKGFVDSEFPSMCISLIKLYMG 162
           DVKSAFLN YLNEE+Y AQ KGFVDSEFP     L K   G
Sbjct: 222 DVKSAFLNGYLNEEVYVAQPKGFVDSEFPQYVYKLNKALYG 262

BLAST of Cmc12g0323471 vs. ExPASy TrEMBL
Match: A0A5A7T5Z7 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00270 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 6.8e-63
Identity = 121/157 (77.07%), Postives = 136/157 (86.62%), Query Frame = 0

Query: 1   MIANLCYTSAIEPTSIDAALKDEYWINAMQEELLQFKHNNVWTLVPKPEGANIIGAKWIY 60
           MI++LCYTSAIEP+ ID ALKDEYWIN MQEELLQFK NNVWTLVPKPEGANIIG KWI+
Sbjct: 1   MISDLCYTSAIEPSIIDVALKDEYWINVMQEELLQFKDNNVWTLVPKPEGANIIGTKWIF 60

Query: 61  KNKTDEPGYVTRSKARLVAQGYAQVERIDFDETFALVARLKAICLLLGISCIQKFKLYQM 120
           KNKTDE GYV R+KA LVAQGYAQVE +DF+E FA VA+L+AI LLLGISCI++F+LYQM
Sbjct: 61  KNKTDEAGYVMRNKALLVAQGYAQVEGVDFNEIFAPVAKLEAIRLLLGISCIRRFELYQM 120

Query: 121 DVKSAFLNCYLNEEIYAAQSKGFVDSEFPSMCISLIK 158
           DVKSAFLN YLNEE+Y AQ KGF+DS+FP     L K
Sbjct: 121 DVKSAFLNGYLNEEVYVAQPKGFIDSKFPQYVYKLNK 157

BLAST of Cmc12g0323471 vs. ExPASy TrEMBL
Match: A0A5D3BKX4 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00650 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.0e-62
Identity = 120/161 (74.53%), Postives = 137/161 (85.09%), Query Frame = 0

Query: 1   MIANLCYTSAIEPTSIDAALKDEYWINAMQEELLQFKHNNVWTLVPKPEGANIIGAKWIY 60
           MI +LCYT AIE +SID ALKDEYWINAMQEELLQF+HNNVWTLVPKPEGANIIG KW++
Sbjct: 195 MIGDLCYTFAIEHSSIDVALKDEYWINAMQEELLQFRHNNVWTLVPKPEGANIIGTKWVF 254

Query: 61  KNKTDEPGYVTRSKARLVAQGYAQVERIDFDETFALVARLKAICLLLGISCIQKFKLYQM 120
           KNKTDE  YVTR+KAR VAQGYAQVE ++FDETFA VARL+AI LLLG+SCI++FKLYQM
Sbjct: 255 KNKTDEARYVTRNKARFVAQGYAQVEGVNFDETFAPVARLEAIRLLLGLSCIRRFKLYQM 314

Query: 121 DVKSAFLNCYLNEEIYAAQSKGFVDSEFPSMCISLIKLYMG 162
           +VKS FL+ YLNEE+Y AQ KGF  SEFP     L K++ G
Sbjct: 315 NVKSVFLSGYLNEEVYVAQPKGFFYSEFPQHVYKLNKVFYG 355

BLAST of Cmc12g0323471 vs. ExPASy TrEMBL
Match: A0A5A7UQV4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005780 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.4e-62
Identity = 120/149 (80.54%), Postives = 131/149 (87.92%), Query Frame = 0

Query: 1   MIANLCYTSAIEPTSIDAALKDEYWINAMQEELLQFKHNNVWTLVPKPEGANIIGAKWIY 60
           MIA+LCY  AIE TS +AALKDEYWINAMQEELL FK NNVWTLVPKP+ ANIIG KWI+
Sbjct: 103 MIADLCYALAIELTSFEAALKDEYWINAMQEELLPFKRNNVWTLVPKPDEANIIGTKWIF 162

Query: 61  KNKTDEPGYVTRSKARLVAQGYAQVERIDFDETFALVARLKAICLLLGISCIQKFKLYQM 120
           KNK DE G VTR+KARLVAQGYAQ+E +DFDETFA VARL+AICLLLGISCI+KFK YQM
Sbjct: 163 KNKIDESGCVTRNKARLVAQGYAQIEGVDFDETFAPVARLEAICLLLGISCIRKFKFYQM 222

Query: 121 DVKSAFLNCYLNEEIYAAQSKGFVDSEFP 150
           DVK AFLN YLNEE+Y AQ KGFVDS+FP
Sbjct: 223 DVKRAFLNGYLNEELYVAQPKGFVDSKFP 251

BLAST of Cmc12g0323471 vs. ExPASy TrEMBL
Match: A0A5D3CXU0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00820 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 4.4e-62
Identity = 117/161 (72.67%), Postives = 136/161 (84.47%), Query Frame = 0

Query: 1   MIANLCYTSAIEPTSIDAALKDEYWINAMQEELLQFKHNNVWTLVPKPEGANIIGAKWIY 60
           M+A+LCY S +EP+++D+AL+DEYW+NAMQEELLQF+ NNVWTLV KPEG N+IG KW++
Sbjct: 551 MVADLCYISTVEPSTVDSALRDEYWLNAMQEELLQFRQNNVWTLVSKPEGVNVIGTKWVF 610

Query: 61  KNKTDEPGYVTRSKARLVAQGYAQVERIDFDETFALVARLKAICLLLGISCIQKFKLYQM 120
           KNKTDE G VT++KA+LVAQGY QVE IDFDETFA VARL+AI LLLGISCIQKFKLYQM
Sbjct: 611 KNKTDEAGCVTKNKAKLVAQGYTQVEGIDFDETFASVARLEAIRLLLGISCIQKFKLYQM 670

Query: 121 DVKSAFLNCYLNEEIYAAQSKGFVDSEFPSMCISLIKLYMG 162
           DVKSAFL+ YLNEE+Y AQ KGFVDSE P     L K   G
Sbjct: 671 DVKSAFLDGYLNEEVYVAQPKGFVDSEHPKHMYKLNKALYG 711

BLAST of Cmc12g0323471 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-25
Identity = 58/147 (39.46%), Postives = 85/147 (57.82%), Query Frame = 0

Query: 5   LCYTSAIEPTSIDAALKDEYWINAMQEELLQFKHNNVWTLVPKPEGANIIGAKWIYKNKT 64
           +C   A EP++ + A +   W  AM +E+   +  + W +   P     IG KW+YK K 
Sbjct: 78  VCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKY 137

Query: 65  DEPGYVTRSKARLVAQGYAQVERIDFDETFALVARLKAICLLLGISCIQKFKLYQMDVKS 124
           +  G + R KARLVA+GY Q E IDF ETF+ V +L ++ L+L IS I  F L+Q+D+ +
Sbjct: 138 NSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISN 197

Query: 125 AFLNCYLNEEIYAAQSKGFVDSEFPSM 152
           AFLN  L+EEIY     G+   +  S+
Sbjct: 198 AFLNGDLDEEIYMKLPPGYAARQGDSL 224

BLAST of Cmc12g0323471 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 91.3 bits (225), Expect = 7.8e-19
Identity = 46/99 (46.46%), Postives = 58/99 (58.59%), Query Frame = 0

Query: 12  EPTSIDAALKDEYWINAMQEELLQFKHNNVWTLVPKPEGANIIGAKWIYKNKTDEPGYVT 71
           EP S+  ALKD  W  AMQEEL     N  W LVP P   NI+G KW++K K    G + 
Sbjct: 27  EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86

Query: 72  RSKARLVAQGYAQVERIDFDETFALVARLKAICLLLGIS 111
           R KARLVA+G+ Q E I F ET++ V R   I  +L ++
Sbjct: 87  RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0037650.19.7e-6475.16gag-pol polyprotein [Cucumis melo var. makuwa] >TYK22795.1 gag-pol polyprotein [... [more]
KAA0036987.11.4e-6277.07putative mitochondrial protein [Cucumis melo var. makuwa] >TYK21218.1 putative m... [more]
TYJ99674.14.1e-6274.53gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0058253.17.0e-6280.54putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0066164.19.1e-6272.67gag-pol polyprotein [Cucumis melo var. makuwa] >TYK15206.1 gag-pol polyprotein [... [more]
Match NameE-valueIdentityDescription
Q94HW27.8e-2438.41Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT948.6e-2337.75Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P041465.6e-2244.07Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P109783.8e-1837.78Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P925201.1e-1746.46Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A5A7T2Q04.7e-6475.16Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G... [more]
A0A5A7T5Z76.8e-6377.07Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5D3BKX42.0e-6274.53Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G... [more]
A0A5A7UQV43.4e-6280.54Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5D3CXU04.4e-6272.67Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G... [more]
Match NameE-valueIdentityDescription
AT4G23160.11.5e-2539.46cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00820.17.8e-1946.46Reverse transcriptase (RNA-dependent DNA polymerase) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 39..157
e-value: 1.1E-30
score: 107.0
NoneNo IPR availablePANTHERPTHR11439:SF351CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8coord: 26..157
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 26..157

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0323471.1Cmc12g0323471.1mRNA