Cmc11g0293521 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0293521
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
LocationCMiso1.1chr11: 9707782 .. 9708429 (+)
RNA-Seq ExpressionCmc11g0293521
SyntenyCmc11g0293521
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGAAGCCTTTTATATTTGACAGCAAGCAGACCTGATATTGCCTATGCTGTGGGAATATGTGCTCGGTATCAGTCAGATCCACGTACCTCTCATTTAAATGCAGTTAAACGAATAATAAAATATGTTCACGGAACAATTGATTTCGGGATTCTGTACTCCTACGATACATCCTCTGAACTAGTGGGATATTGTAATGCAGACTGGGCAGGTTCTGCTGATGATCGGAAAAGCACTTCTGGTGGATGTTTCTTTCTTGGGAATAATCTTCTTTCATGGTTCAGTAAGAAACAAAATTATGTATCTCTATCAACAGCAGAAGCGGAGTATATAGCTGTAGGGAGTGGGTGTACTCAAATGATATGGATGAAAAATATGTTGAATGAATATGGGATTATCCAAGATGTTATGACCTTATATTGTGATAATATGAGTGTCATAGATATATCAAAAAATCCAGTCCAGAATAGTCGTACTAAGCACATGGATATAAGGCATCACTTTATTAGAGAACTCATTGAAAATAAGGTTATTACATTACAACACATTCACTCGAACTCACAATTGACTGACATTTTCACTAAACCCCTCAATGCAACCACGTTTGAGCATTTACGTGCCTGTTTAGGAGTTTGTAAAATATAG

mRNA sequence

ATGATTGGAAGCCTTTTATATTTGACAGCAAGCAGACCTGATATTGCCTATGCTGTGGGAATATGTGCTCGGTATCAGTCAGATCCACGTACCTCTCATTTAAATGCAGTTAAACGAATAATAAAATATGTTCACGGAACAATTGATTTCGGGATTCTGTACTCCTACGATACATCCTCTGAACTAGTGGGATATTGTAATGCAGACTGGGCAGGTTCTGCTGATGATCGGAAAAGCACTTCTGGTGGATGTTTCTTTCTTGGGAATAATCTTCTTTCATGGTTCAGTAAGAAACAAAATTATGTATCTCTATCAACAGCAGAAGCGGAGTATATAGCTGTAGGGAGTGGGTGTACTCAAATGATATGGATGAAAAATATGTTGAATGAATATGGGATTATCCAAGATGTTATGACCTTATATTGTGATAATATGAGTGTCATAGATATATCAAAAAATCCAGTCCAGAATAGTCGTACTAAGCACATGGATATAAGGCATCACTTTATTAGAGAACTCATTGAAAATAAGGTTATTACATTACAACACATTCACTCGAACTCACAATTGACTGACATTTTCACTAAACCCCTCAATGCAACCACGTTTGAGCATTTACGTGCCTGTTTAGGAGTTTGTAAAATATAG

Coding sequence (CDS)

ATGATTGGAAGCCTTTTATATTTGACAGCAAGCAGACCTGATATTGCCTATGCTGTGGGAATATGTGCTCGGTATCAGTCAGATCCACGTACCTCTCATTTAAATGCAGTTAAACGAATAATAAAATATGTTCACGGAACAATTGATTTCGGGATTCTGTACTCCTACGATACATCCTCTGAACTAGTGGGATATTGTAATGCAGACTGGGCAGGTTCTGCTGATGATCGGAAAAGCACTTCTGGTGGATGTTTCTTTCTTGGGAATAATCTTCTTTCATGGTTCAGTAAGAAACAAAATTATGTATCTCTATCAACAGCAGAAGCGGAGTATATAGCTGTAGGGAGTGGGTGTACTCAAATGATATGGATGAAAAATATGTTGAATGAATATGGGATTATCCAAGATGTTATGACCTTATATTGTGATAATATGAGTGTCATAGATATATCAAAAAATCCAGTCCAGAATAGTCGTACTAAGCACATGGATATAAGGCATCACTTTATTAGAGAACTCATTGAAAATAAGGTTATTACATTACAACACATTCACTCGAACTCACAATTGACTGACATTTTCACTAAACCCCTCAATGCAACCACGTTTGAGCATTTACGTGCCTGTTTAGGAGTTTGTAAAATATAG

Protein sequence

MIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTIDFGILYSYDTSSELVGYCNADWAGSADDRKSTSGGCFFLGNNLLSWFSKKQNYVSLSTAEAEYIAVGSGCTQMIWMKNMLNEYGIIQDVMTLYCDNMSVIDISKNPVQNSRTKHMDIRHHFIRELIENKVITLQHIHSNSQLTDIFTKPLNATTFEHLRACLGVCKI
Homology
BLAST of Cmc11g0293521 vs. NCBI nr
Match: KAA0055610.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 360.1 bits (923), Expect = 1.3e-95
Identity = 170/214 (79.44%), Postives = 192/214 (89.72%), Query Frame = 0

Query: 1   MIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTIDFGILYSYDTSS 60
           ++GSLLYLTASRP+IAY VGICA YQ+DPR +HL AVKRI+KYVHGT DFG++YSYDT+ 
Sbjct: 69  IVGSLLYLTASRPNIAYVVGICAHYQADPRITHLEAVKRILKYVHGTSDFGMMYSYDTTP 128

Query: 61  ELVGYCNADWAGSADDRKSTSGGCFFLGNNLLSWFSKKQNYVSLSTAEAEYIAVGSGCTQ 120
            LVGYC+ADWAGSADDRKSTSGGCFFLGNNL+SW SKKQN VSLST EAEYIA GSGCTQ
Sbjct: 129 FLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTEAEYIAAGSGCTQ 188

Query: 121 MIWMKNMLNEYGIIQDVMTLYCDNMSVIDISKNPVQNSRTKHMDIRHHFIRELIENKVIT 180
           +IWMKNML+EYG  QD MTLYCDN S IDISKNPVQ+SRTKH+DIRHHFIREL+E+KVI 
Sbjct: 189 LIWMKNMLHEYGFDQDTMTLYCDNTSAIDISKNPVQHSRTKHIDIRHHFIRELVEDKVIK 248

Query: 181 LQHIHSNSQLTDIFTKPLNATTFEHLRACLGVCK 215
           L HI SN QL DIFTKPL+A++FE+LRA LGVC+
Sbjct: 249 LDHIRSNLQLVDIFTKPLDASSFEYLRAGLGVCR 282

BLAST of Cmc11g0293521 vs. NCBI nr
Match: TYK21311.1 (F5J5.1 [Cucumis melo var. makuwa])

HSP 1 Score: 350.5 bits (898), Expect = 1.0e-92
Identity = 173/212 (81.60%), Postives = 187/212 (88.21%), Query Frame = 0

Query: 1   MIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTIDFGILYSYDTSS 60
           +I SLLYLTASRPDIAYAVGICA++QSDPRTSHL  VKRIIKYVHGT DFGILYSYDT+S
Sbjct: 342 IIRSLLYLTASRPDIAYAVGICAQFQSDPRTSHLTTVKRIIKYVHGTTDFGILYSYDTTS 401

Query: 61  ELVGYCNADWAGSADDRKSTSGGCFFLGNNLLSWFSKKQNYVSLSTAEAEYIAVGSGCTQ 120
            LVGYC+ADW GSADDR+STS GCFFLG     WFSKKQ  VSLST E EYIA GSGCTQ
Sbjct: 402 ILVGYCDADWVGSADDRESTSSGCFFLG----IWFSKKQICVSLSTVEVEYIATGSGCTQ 461

Query: 121 MIWMKNMLNEYGIIQDVMTLYCDNMSVIDISKNPVQNSRTKHMDIRHHFIRELIENKVIT 180
           +IWMKNML+EYGI QDVMTLYCDNMS IDISK PVQ+S+TKH+DIRHHFIRELIENK+IT
Sbjct: 462 LIWMKNMLHEYGITQDVMTLYCDNMSAIDISKYPVQHSQTKHIDIRHHFIRELIENKIIT 521

Query: 181 LQHIHSNSQLTDIFTKPLNATTFEHLRACLGV 213
           LQH+ S SQL DIFTKPL+ TTFEHLRA LGV
Sbjct: 522 LQHVRSYSQLADIFTKPLDETTFEHLRAGLGV 549

BLAST of Cmc11g0293521 vs. NCBI nr
Match: KAA0034956.1 (F5J5.1 [Cucumis melo var. makuwa])

HSP 1 Score: 349.0 bits (894), Expect = 3.0e-92
Identity = 172/211 (81.52%), Postives = 186/211 (88.15%), Query Frame = 0

Query: 1   MIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTIDFGILYSYDTSS 60
           +I SLLYLTASRPDIAYAVGICA++QSDPRTSHL  VKRIIKYVHGT DFGILYSYDT+S
Sbjct: 342 IIRSLLYLTASRPDIAYAVGICAQFQSDPRTSHLTTVKRIIKYVHGTTDFGILYSYDTTS 401

Query: 61  ELVGYCNADWAGSADDRKSTSGGCFFLGNNLLSWFSKKQNYVSLSTAEAEYIAVGSGCTQ 120
            LVGYC+ADW GSADDR+STS GCFFLG     WFSKKQ  VSLST E EYIA GSGCTQ
Sbjct: 402 ILVGYCDADWVGSADDRESTSSGCFFLG----IWFSKKQICVSLSTVEVEYIATGSGCTQ 461

Query: 121 MIWMKNMLNEYGIIQDVMTLYCDNMSVIDISKNPVQNSRTKHMDIRHHFIRELIENKVIT 180
           +IWMKNML+EYGI QDVMTLYCDNMS IDISK PVQ+S+TKH+DIRHHFIRELIENK+IT
Sbjct: 462 LIWMKNMLHEYGITQDVMTLYCDNMSAIDISKYPVQHSQTKHIDIRHHFIRELIENKIIT 521

Query: 181 LQHIHSNSQLTDIFTKPLNATTFEHLRACLG 212
           LQH+ S SQL DIFTKPL+ TTFEHLRA LG
Sbjct: 522 LQHVRSYSQLADIFTKPLDETTFEHLRAGLG 548

BLAST of Cmc11g0293521 vs. NCBI nr
Match: AAO73523.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 339.3 bits (869), Expect = 2.3e-89
Identity = 157/213 (73.71%), Postives = 188/213 (88.26%), Query Frame = 0

Query: 1    MIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTIDFGILYSYDTSS 60
            MIGSLLYLTASRPDI YAVG+CARYQ++P+ SHLN VKRI+KYV+GT D+GI+Y + +SS
Sbjct: 1359 MIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSSS 1418

Query: 61   ELVGYCNADWAGSADDRKSTSGGCFFLGNNLLSWFSKKQNYVSLSTAEAEYIAVGSGCTQ 120
             LVGYC+ADWAGSADDRKSTSGGCF+LGNNL+SWFSKKQN VSLSTAEAEYIA GS C+Q
Sbjct: 1419 MLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQ 1478

Query: 121  MIWMKNMLNEYGIIQDVMTLYCDNMSVIDISKNPVQNSRTKHMDIRHHFIRELIENKVIT 180
            ++WMK ML EY + QDVMTLYCDNMS I+ISKNPVQ+SRTKH+DIRHH+IR+L+++KVIT
Sbjct: 1479 LVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVIT 1538

Query: 181  LQHIHSNSQLTDIFTKPLNATTFEHLRACLGVC 214
            L+H+ +  Q+ DIFTK L+A  FE LR  LG+C
Sbjct: 1539 LKHVDTEEQIADIFTKALDANQFEKLRGKLGIC 1571

BLAST of Cmc11g0293521 vs. NCBI nr
Match: AAO73529.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 339.0 bits (868), Expect = 3.1e-89
Identity = 157/213 (73.71%), Postives = 187/213 (87.79%), Query Frame = 0

Query: 1    MIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTIDFGILYSYDTSS 60
            MIGSLLYLTASRPDI YAVG+CARYQ++P+ SHLN VKRI+KYV+GT D+GI+Y + + S
Sbjct: 1360 MIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSGS 1419

Query: 61   ELVGYCNADWAGSADDRKSTSGGCFFLGNNLLSWFSKKQNYVSLSTAEAEYIAVGSGCTQ 120
             LVGYC+ADWAGSADDRKSTSGGCF+LGNNL+SWFSKKQN VSLSTAEAEYIA GS C+Q
Sbjct: 1420 MLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQ 1479

Query: 121  MIWMKNMLNEYGIIQDVMTLYCDNMSVIDISKNPVQNSRTKHMDIRHHFIRELIENKVIT 180
            ++WMK ML EY + QDVMTLYCDNMS I+ISKNPVQ+SRTKH+DIRHH+IREL+++KVIT
Sbjct: 1480 LVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRELVDDKVIT 1539

Query: 181  LQHIHSNSQLTDIFTKPLNATTFEHLRACLGVC 214
            L+H+ +  Q+ DIFTK L+A  FE LR  LG+C
Sbjct: 1540 LEHVDTEEQIADIFTKALDAKQFEKLRGKLGIC 1572

BLAST of Cmc11g0293521 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 7.2e-41
Identity = 85/216 (39.35%), Postives = 134/216 (62.04%), Query Frame = 0

Query: 1    MIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTIDFGILYSYDTSS 60
            ++GSL YL  +RPDI+YAV   +++   P   HL A+KRI++Y+ GT + GI      + 
Sbjct: 1248 IVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTL 1307

Query: 61   ELVGYCNADWAGSADDRKSTSGGCFFLGNNLLSWFSKKQNYVSLSTAEAEYIAVGSGCTQ 120
             L  Y +ADWAG  DD  ST+G   +LG++ +SW SKKQ  V  S+ EAEY +V +  ++
Sbjct: 1308 SLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSE 1367

Query: 121  MIWMKNMLNEYGI-IQDVMTLYCDNMSVIDISKNPVQNSRTKHMDIRHHFIRELIENKVI 180
            M W+ ++L E GI +     +YCDN+    +  NPV +SR KH+ I +HFIR  +++  +
Sbjct: 1368 MQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGAL 1427

Query: 181  TLQHIHSNSQLTDIFTKPLNATTFEHLRACLGVCKI 216
             + H+ ++ QL D  TKPL+ T F++  + +GV ++
Sbjct: 1428 RVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRV 1463

BLAST of Cmc11g0293521 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 7.2e-41
Identity = 83/216 (38.43%), Postives = 132/216 (61.11%), Query Frame = 0

Query: 1    MIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTIDFGILYSYDTSS 60
            ++GSL YL  +RPD++YAV   ++Y   P   H NA+KR+++Y+ GT D GI      + 
Sbjct: 1231 IVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTL 1290

Query: 61   ELVGYCNADWAGSADDRKSTSGGCFFLGNNLLSWFSKKQNYVSLSTAEAEYIAVGSGCTQ 120
             L  Y +ADWAG  DD  ST+G   +LG++ +SW SKKQ  V  S+ EAEY +V +  ++
Sbjct: 1291 SLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSE 1350

Query: 121  MIWMKNMLNEYGI-IQDVMTLYCDNMSVIDISKNPVQNSRTKHMDIRHHFIRELIENKVI 180
            + W+ ++L E GI +     +YCDN+    +  NPV +SR KH+ + +HFIR  +++  +
Sbjct: 1351 LQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGAL 1410

Query: 181  TLQHIHSNSQLTDIFTKPLNATTFEHLRACLGVCKI 216
             + H+ ++ QL D  TKPL+   F++    +GV K+
Sbjct: 1411 RVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIKV 1446

BLAST of Cmc11g0293521 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 167.2 bits (422), Expect = 2.1e-40
Identity = 88/217 (40.55%), Postives = 140/217 (64.52%), Query Frame = 0

Query: 1    MIGSLLY-LTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTIDFGILYSYDTS 60
            +IG L+Y +  +RPD+  AV I +RY S   +     +KR+++Y+ GTID  +++  + +
Sbjct: 1184 LIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLA 1243

Query: 61   SE--LVGYCNADWAGSADDRKSTSGGCFFLGN-NLLSWFSKKQNYVSLSTAEAEYIAVGS 120
             E  ++GY ++DWAGS  DRKST+G  F + + NL+ W +K+QN V+ S+ EAEY+A+  
Sbjct: 1244 FENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFE 1303

Query: 121  GCTQMIWMKNMLNEYGI-IQDVMTLYCDNMSVIDISKNPVQNSRTKHMDIRHHFIRELIE 180
               + +W+K +L    I +++ + +Y DN   I I+ NP  + R KH+DI++HF RE ++
Sbjct: 1304 AVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQ 1363

Query: 181  NKVITLQHIHSNSQLTDIFTKPLNATTFEHLRACLGV 213
            N VI L++I + +QL DIFTKPL A  F  LR  LG+
Sbjct: 1364 NNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

BLAST of Cmc11g0293521 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.6e-40
Identity = 85/212 (40.09%), Postives = 132/212 (62.26%), Query Frame = 0

Query: 2    IGSLLY-LTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTIDFGILYSYDTSS 61
            +GSL+Y +  +RPDIA+AVG+ +R+  +P   H  AVK I++Y+ GT    + +   +  
Sbjct: 1115 VGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFG-GSDP 1174

Query: 62   ELVGYCNADWAGSADDRKSTSGGCFFLGNNLLSWFSKKQNYVSLSTAEAEYIAVGSGCTQ 121
             L GY +AD AG  D+RKS++G  F      +SW SK Q  V+LST EAEYIA      +
Sbjct: 1175 ILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKE 1234

Query: 122  MIWMKNMLNEYGIIQDVMTLYCDNMSVIDISKNPVQNSRTKHMDIRHHFIRELIENKVIT 181
            MIW+K  L E G+ Q    +YCD+ S ID+SKN + ++RTKH+D+R+H+IRE+++++ + 
Sbjct: 1235 MIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLK 1294

Query: 182  LQHIHSNSQLTDIFTKPLNATTFEHLRACLGV 213
            +  I +N    D+ TK +    FE  +  +G+
Sbjct: 1295 VLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

BLAST of Cmc11g0293521 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-23
Identity = 50/124 (40.32%), Postives = 84/124 (67.74%), Query Frame = 0

Query: 2   IGSLLYL-TASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTIDFGILYSYDTSS 61
           +G+++YL   +RPD+A AVG+ +++ SDP  +H  A+KR+++Y+  T  +G+ ++   ++
Sbjct: 10  VGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTA 69

Query: 62  ELVGYCNADWAGSADDRKSTSGGCFFLGNNLLSWFSKKQNYVSLSTAEAEYIAVGSGCTQ 121
           +LVGY +ADWAG  + R+STSG  F L    +SW SKKQ  V+LS+ E EY+A+     +
Sbjct: 70  KLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQE 129

Query: 122 MIWM 125
            +W+
Sbjct: 130 AVWL 133

BLAST of Cmc11g0293521 vs. ExPASy TrEMBL
Match: A0A5D3DLL1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00150 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.2e-96
Identity = 170/214 (79.44%), Postives = 192/214 (89.72%), Query Frame = 0

Query: 1   MIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTIDFGILYSYDTSS 60
           ++GSLLYLTASRP+IAY VGICA YQ+DPR +HL AVKRI+KYVHGT DFG++YSYDT+ 
Sbjct: 69  IVGSLLYLTASRPNIAYVVGICAHYQADPRITHLEAVKRILKYVHGTSDFGMMYSYDTTP 128

Query: 61  ELVGYCNADWAGSADDRKSTSGGCFFLGNNLLSWFSKKQNYVSLSTAEAEYIAVGSGCTQ 120
            LVGYC+ADWAGSADDRKSTSGGCFFLGNNL+SW SKKQN VSLST EAEYIA GSGCTQ
Sbjct: 129 FLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTEAEYIAAGSGCTQ 188

Query: 121 MIWMKNMLNEYGIIQDVMTLYCDNMSVIDISKNPVQNSRTKHMDIRHHFIRELIENKVIT 180
           +IWMKNML+EYG  QD MTLYCDN S IDISKNPVQ+SRTKH+DIRHHFIREL+E+KVI 
Sbjct: 189 LIWMKNMLHEYGFDQDTMTLYCDNTSAIDISKNPVQHSRTKHIDIRHHFIRELVEDKVIK 248

Query: 181 LQHIHSNSQLTDIFTKPLNATTFEHLRACLGVCK 215
           L HI SN QL DIFTKPL+A++FE+LRA LGVC+
Sbjct: 249 LDHIRSNLQLVDIFTKPLDASSFEYLRAGLGVCR 282

BLAST of Cmc11g0293521 vs. ExPASy TrEMBL
Match: A0A5D3DCC3 (F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00200 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.9e-93
Identity = 173/212 (81.60%), Postives = 187/212 (88.21%), Query Frame = 0

Query: 1   MIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTIDFGILYSYDTSS 60
           +I SLLYLTASRPDIAYAVGICA++QSDPRTSHL  VKRIIKYVHGT DFGILYSYDT+S
Sbjct: 342 IIRSLLYLTASRPDIAYAVGICAQFQSDPRTSHLTTVKRIIKYVHGTTDFGILYSYDTTS 401

Query: 61  ELVGYCNADWAGSADDRKSTSGGCFFLGNNLLSWFSKKQNYVSLSTAEAEYIAVGSGCTQ 120
            LVGYC+ADW GSADDR+STS GCFFLG     WFSKKQ  VSLST E EYIA GSGCTQ
Sbjct: 402 ILVGYCDADWVGSADDRESTSSGCFFLG----IWFSKKQICVSLSTVEVEYIATGSGCTQ 461

Query: 121 MIWMKNMLNEYGIIQDVMTLYCDNMSVIDISKNPVQNSRTKHMDIRHHFIRELIENKVIT 180
           +IWMKNML+EYGI QDVMTLYCDNMS IDISK PVQ+S+TKH+DIRHHFIRELIENK+IT
Sbjct: 462 LIWMKNMLHEYGITQDVMTLYCDNMSAIDISKYPVQHSQTKHIDIRHHFIRELIENKIIT 521

Query: 181 LQHIHSNSQLTDIFTKPLNATTFEHLRACLGV 213
           LQH+ S SQL DIFTKPL+ TTFEHLRA LGV
Sbjct: 522 LQHVRSYSQLADIFTKPLDETTFEHLRAGLGV 549

BLAST of Cmc11g0293521 vs. ExPASy TrEMBL
Match: A0A5A7SYI8 (F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold434G00200 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.4e-92
Identity = 172/211 (81.52%), Postives = 186/211 (88.15%), Query Frame = 0

Query: 1   MIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTIDFGILYSYDTSS 60
           +I SLLYLTASRPDIAYAVGICA++QSDPRTSHL  VKRIIKYVHGT DFGILYSYDT+S
Sbjct: 342 IIRSLLYLTASRPDIAYAVGICAQFQSDPRTSHLTTVKRIIKYVHGTTDFGILYSYDTTS 401

Query: 61  ELVGYCNADWAGSADDRKSTSGGCFFLGNNLLSWFSKKQNYVSLSTAEAEYIAVGSGCTQ 120
            LVGYC+ADW GSADDR+STS GCFFLG     WFSKKQ  VSLST E EYIA GSGCTQ
Sbjct: 402 ILVGYCDADWVGSADDRESTSSGCFFLG----IWFSKKQICVSLSTVEVEYIATGSGCTQ 461

Query: 121 MIWMKNMLNEYGIIQDVMTLYCDNMSVIDISKNPVQNSRTKHMDIRHHFIRELIENKVIT 180
           +IWMKNML+EYGI QDVMTLYCDNMS IDISK PVQ+S+TKH+DIRHHFIRELIENK+IT
Sbjct: 462 LIWMKNMLHEYGITQDVMTLYCDNMSAIDISKYPVQHSQTKHIDIRHHFIRELIENKIIT 521

Query: 181 LQHIHSNSQLTDIFTKPLNATTFEHLRACLG 212
           LQH+ S SQL DIFTKPL+ TTFEHLRA LG
Sbjct: 522 LQHVRSYSQLADIFTKPLDETTFEHLRAGLG 548

BLAST of Cmc11g0293521 vs. ExPASy TrEMBL
Match: Q84VI2 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.1e-89
Identity = 157/213 (73.71%), Postives = 188/213 (88.26%), Query Frame = 0

Query: 1    MIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTIDFGILYSYDTSS 60
            MIGSLLYLTASRPDI YAVG+CARYQ++P+ SHLN VKRI+KYV+GT D+GI+Y + +SS
Sbjct: 1359 MIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSSS 1418

Query: 61   ELVGYCNADWAGSADDRKSTSGGCFFLGNNLLSWFSKKQNYVSLSTAEAEYIAVGSGCTQ 120
             LVGYC+ADWAGSADDRKSTSGGCF+LGNNL+SWFSKKQN VSLSTAEAEYIA GS C+Q
Sbjct: 1419 MLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQ 1478

Query: 121  MIWMKNMLNEYGIIQDVMTLYCDNMSVIDISKNPVQNSRTKHMDIRHHFIRELIENKVIT 180
            ++WMK ML EY + QDVMTLYCDNMS I+ISKNPVQ+SRTKH+DIRHH+IR+L+++KVIT
Sbjct: 1479 LVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVIT 1538

Query: 181  LQHIHSNSQLTDIFTKPLNATTFEHLRACLGVC 214
            L+H+ +  Q+ DIFTK L+A  FE LR  LG+C
Sbjct: 1539 LKHVDTEEQIADIFTKALDANQFEKLRGKLGIC 1571

BLAST of Cmc11g0293521 vs. ExPASy TrEMBL
Match: A0A392MST7 (Gag-pol polyprotein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0011298 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.5e-89
Identity = 158/213 (74.18%), Postives = 187/213 (87.79%), Query Frame = 0

Query: 1   MIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTIDFGILYSYDTSS 60
           MIGSLLYLTASRPDIAYAVG+CARYQ+DP+ SHL  VKRI+KYV+GT D+G+LY++   S
Sbjct: 247 MIGSLLYLTASRPDIAYAVGVCARYQADPKASHLIQVKRILKYVNGTCDYGMLYTHGGGS 306

Query: 61  ELVGYCNADWAGSADDRKSTSGGCFFLGNNLLSWFSKKQNYVSLSTAEAEYIAVGSGCTQ 120
            L+GYC+ADWAGSADDRKSTSGGCFFLGNNL+SWFSKKQN VSLSTAEAEYIA GS C+Q
Sbjct: 307 VLLGYCDADWAGSADDRKSTSGGCFFLGNNLISWFSKKQNSVSLSTAEAEYIAAGSSCSQ 366

Query: 121 MIWMKNMLNEYGIIQDVMTLYCDNMSVIDISKNPVQNSRTKHMDIRHHFIRELIENKVIT 180
           ++WMK ML EY + QDVMTLYCDN+S I+ISKNP+Q+SRTKH+DIRHHFIR+L+E+KV+T
Sbjct: 367 LVWMKQMLXEYNVEQDVMTLYCDNLSSINISKNPIQHSRTKHIDIRHHFIRDLVEDKVVT 426

Query: 181 LQHIHSNSQLTDIFTKPLNATTFEHLRACLGVC 214
           L+HI +  QL DIFTK L+A  FE LR  LG+C
Sbjct: 427 LEHIATEHQLADIFTKTLDANRFEELRGKLGIC 459

BLAST of Cmc11g0293521 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 132.1 bits (331), Expect = 5.3e-31
Identity = 67/173 (38.73%), Postives = 103/173 (59.54%), Query Frame = 0

Query: 1   MIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTIDFGILYSYDTSS 60
           +IG L+YL  +R DI++AV   +++   PR +H  AV +I+ Y+ GT+  G+ YS     
Sbjct: 381 LIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEM 440

Query: 61  ELVGYCNADWAGSADDRKSTSGGCFFLGNNLLSWFSKKQNYVSLSTAEAEYIAVGSGCTQ 120
           +L  + +A +    D R+ST+G C FLG +L+SW SKKQ  VS S+AEAEY A+     +
Sbjct: 441 QLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDE 500

Query: 121 MIWMKNMLNEYGI-IQDVMTLYCDNMSVIDISKNPVQNSRTKHMDIRHHFIRE 173
           M+W+     E  + +     L+CDN + I I+ N V + RTKH++   H +RE
Sbjct: 501 MMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

BLAST of Cmc11g0293521 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-23
Identity = 48/123 (39.02%), Postives = 78/123 (63.41%), Query Frame = 0

Query: 1   MIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTIDFGILYSYDTSS 60
           ++G+L YLT +RPDI+YAV I  +   +P  +  + +KR+++YV GTI  G+    ++  
Sbjct: 103 IVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKL 162

Query: 61  ELVGYCNADWAGSADDRKSTSGGCFFLGNNLLSWFSKKQNYVSLSTAEAEYIAVGSGCTQ 120
            +  +C++DWAG    R+ST+G C FLG N++SW +K+Q  VS S+ E EY A+     +
Sbjct: 163 NVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAE 222

Query: 121 MIW 124
           + W
Sbjct: 223 LTW 225

BLAST of Cmc11g0293521 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-12
Identity = 32/88 (36.36%), Postives = 54/88 (61.36%), Query Frame = 0

Query: 6  LYLTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTIDFGILYSYDTSSELVGY 65
          +YLT +RPD+ +AV   +++ S  RT+ + AV +++ YV GT+  G+ YS  +  +L  +
Sbjct: 1  MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 66 CNADWAGSADDRKSTSGGC-----FFLG 89
           ++DWA   D R+S +G C     +FLG
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLVPLWFLG 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0055610.11.3e-9579.44gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [... [more]
TYK21311.11.0e-9281.60F5J5.1 [Cucumis melo var. makuwa][more]
KAA0034956.13.0e-9281.52F5J5.1 [Cucumis melo var. makuwa][more]
AAO73523.12.3e-8973.71gag-pol polyprotein [Glycine max][more]
AAO73529.13.1e-8973.71gag-pol polyprotein [Glycine max][more]
Match NameE-valueIdentityDescription
Q94HW27.2e-4139.35Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT947.2e-4138.43Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P041462.1e-4040.55Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P109783.6e-4040.09Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P0CV721.0e-2340.32Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P... [more]
Match NameE-valueIdentityDescription
A0A5D3DLL16.2e-9679.44Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G... [more]
A0A5D3DCC34.9e-9381.60F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00200 PE=4 S... [more]
A0A5A7SYI81.4e-9281.52F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold434G00200 PE=4 SV... [more]
Q84VI21.1e-8973.71Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1[more]
A0A392MST71.5e-8974.18Gag-pol polyprotein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0011298 PE=... [more]
Match NameE-valueIdentityDescription
AT4G23160.15.3e-3138.73cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.11.4e-2339.02DNA/RNA polymerases superfamily protein [more]
ATMG00240.13.2e-1236.36Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 81..214
NoneNo IPR availablePANTHERPTHR11439:SF355CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8coord: 81..214
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 63..200
e-value: 6.13755E-76
score: 223.114
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 3..166

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0293521.1Cmc11g0293521.1mRNA