Cmc10g0283391 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0283391
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr10: 23570618 .. 23571490 (+)
RNA-Seq Expression	Cmc10g0283391
Synteny	Cmc10g0283391

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAAGTGAAATTGCTCGTCCCATTAGTACAATTCTTGATGGTTCTAATTATATTACATGGGCCAATCAAATGAAAAGTTTCTTAATTGGACGTAAATTATGGCGTATTGTCACGGGTGATATTGCCAAACCGACCAAACAAGACAAGGAAGATGATGGAAAATTTATCGAACGCCTTGAAGAATGGGACAGCAAAAATCATCAGATTATCACCTGGCTTAGTAACACAACAATTCCTGCTATCCATACACAATTTGATGCTTTTGAAAGTGCTAAAGAGTTATGGGATTTTCTTTTTACACGATTTAAGTCCGTCGGATTAGCGCATTACTATCAGTTGCACAATAATCTTGTTAATCTTAATCAAGAAGCTGGACAATCCGTCAATGAGTATCTAGCCGTGCTTCAACCTATCTGGACTCAACTTGATCAAGCTAACATCAGTAAAGATCATCTTCGTCTTATTAAAGTCCTTATGGGACTTCGTCCAGAATATGAATCTGTTAGGGCTGCCTTGTTGCACCGCAGTCCCTTGCCCTCATTGGATGCTGCTATCCAAGAAATATTATTTGAAGAAAAACGTCTTGGCATCAATCTCTCTAAACATTCGGATGTTGTTCTTGCCAGCACTTATTCACCACCTGGAGCATCAAGCACATTTTGTAAGAATTGTAAGCTCACTGGTCATAAATTTATTGATTGTCCTAAAATAGAATGCAGGTACTGCCATAAACCAGGTCATATTCTGGATAATTGTCCCATAAAACCACCTCGACCTCGAAGTTATTCTACAAGAGCAAAGAACTTCACTAAACCCAGGAACTCTTCTGTTGTTGCTGCTACTTTAGACAATCCTACCACACCCTAG

mRNA sequence

ATGGAGAAAAGTGAAATTGCTCGTCCCATTAGTACAATTCTTGATGGTTCTAATTATATTACATGGGCCAATCAAATGAAAAGTTTCTTAATTGGACGTAAATTATGGCGTATTGTCACGGGTGATATTGCCAAACCGACCAAACAAGACAAGGAAGATGATGGAAAATTTATCGAACGCCTTGAAGAATGGGACAGCAAAAATCATCAGATTATCACCTGGCTTAGTAACACAACAATTCCTGCTATCCATACACAATTTGATGCTTTTGAAAGTGCTAAAGAGTTATGGGATTTTCTTTTTACACGATTTAAGTCCGTCGGATTAGCGCATTACTATCAGTTGCACAATAATCTTGTTAATCTTAATCAAGAAGCTGGACAATCCGTCAATGAGTATCTAGCCGTGCTTCAACCTATCTGGACTCAACTTGATCAAGCTAACATCAGTAAAGATCATCTTCGTCTTATTAAAGTCCTTATGGGACTTCGTCCAGAATATGAATCTGTTAGGGCTGCCTTGTTGCACCGCAGTCCCTTGCCCTCATTGGATGCTGCTATCCAAGAAATATTATTTGAAGAAAAACGTCTTGGCATCAATCTCTCTAAACATTCGGATGTTGTTCTTGCCAGCACTTATTCACCACCTGGAGCATCAAGCACATTTTGTAAGAATTGTAAGCTCACTGGTCATAAATTTATTGATTGTCCTAAAATAGAATGCAGGTACTGCCATAAACCAGGTCATATTCTGGATAATTGTCCCATAAAACCACCTCGACCTCGAAGTTATTCTACAAGAGCAAAGAACTTCACTAAACCCAGGAACTCTTCTGTTGTTGCTGCTACTTTAGACAATCCTACCACACCCTAG

Coding sequence (CDS)

ATGGAGAAAAGTGAAATTGCTCGTCCCATTAGTACAATTCTTGATGGTTCTAATTATATTACATGGGCCAATCAAATGAAAAGTTTCTTAATTGGACGTAAATTATGGCGTATTGTCACGGGTGATATTGCCAAACCGACCAAACAAGACAAGGAAGATGATGGAAAATTTATCGAACGCCTTGAAGAATGGGACAGCAAAAATCATCAGATTATCACCTGGCTTAGTAACACAACAATTCCTGCTATCCATACACAATTTGATGCTTTTGAAAGTGCTAAAGAGTTATGGGATTTTCTTTTTACACGATTTAAGTCCGTCGGATTAGCGCATTACTATCAGTTGCACAATAATCTTGTTAATCTTAATCAAGAAGCTGGACAATCCGTCAATGAGTATCTAGCCGTGCTTCAACCTATCTGGACTCAACTTGATCAAGCTAACATCAGTAAAGATCATCTTCGTCTTATTAAAGTCCTTATGGGACTTCGTCCAGAATATGAATCTGTTAGGGCTGCCTTGTTGCACCGCAGTCCCTTGCCCTCATTGGATGCTGCTATCCAAGAAATATTATTTGAAGAAAAACGTCTTGGCATCAATCTCTCTAAACATTCGGATGTTGTTCTTGCCAGCACTTATTCACCACCTGGAGCATCAAGCACATTTTGTAAGAATTGTAAGCTCACTGGTCATAAATTTATTGATTGTCCTAAAATAGAATGCAGGTACTGCCATAAACCAGGTCATATTCTGGATAATTGTCCCATAAAACCACCTCGACCTCGAAGTTATTCTACAAGAGCAAAGAACTTCACTAAACCCAGGAACTCTTCTGTTGTTGCTGCTACTTTAGACAATCCTACCACACCCTAG

Protein sequence

MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDIAKPTKQDKEDDGKFIERLEEWDSKNHQIITWLSNTTIPAIHTQFDAFESAKELWDFLFTRFKSVGLAHYYQLHNNLVNLNQEAGQSVNEYLAVLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKPGHILDNCPIKPPRPRSYSTRAKNFTKPRNSSVVAATLDNPTTP

Homology

[Close]

BLAST of Cmc10g0283391 vs. NCBI nr
Match: KAA0064060.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 581.6 bits (1498), Expect = 3.7e-162
Identity = 282/290 (97.24%), Postives = 285/290 (98.28%), Query Frame = 0


Query: 1   MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDIAKPTKQDKEDDGKFIER 60
           MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDIAKPTKQDKEDDGKFIER
Sbjct: 1   MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDIAKPTKQDKEDDGKFIER 60

Query: 61  LEEWDSKNHQIITWLSNTTIPAIHTQFDAFESAKELWDFLFTRFKSVGLAHYYQLHNNLV 120
           LEEWDSKNHQIITWLSNT+IPAIHTQFDAFESAKELWDFL TRFKSVGLAHYYQLHNNLV
Sbjct: 61  LEEWDSKNHQIITWLSNTSIPAIHTQFDAFESAKELWDFLSTRFKSVGLAHYYQLHNNLV 120

Query: 121 NLNQEAGQSVNEYLAVLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVRAALLHRSPL 180
           NLNQEAGQSVNEYL VLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVRAALLHRSPL
Sbjct: 121 NLNQEAGQSVNEYLVVLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVRAALLHRSPL 180

Query: 181 PSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE 240
           PSLDAAIQEILFEEKRLGINLS +SDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE
Sbjct: 181 PSLDAAIQEILFEEKRLGINLSNYSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE 240

Query: 241 CRYCHKPGHILDNCPIKPPRPRSYSTRAKNFTKPRNSSVVAATLDNPTTP 291
           CRYCHKPGHILDNCPIKPP+PRSYSTRAK FTKPRNS VVAATLDNPTTP
Sbjct: 241 CRYCHKPGHILDNCPIKPPQPRSYSTRAKTFTKPRNSFVVAATLDNPTTP 290

[Close]

BLAST of Cmc10g0283391 vs. NCBI nr
Match: KAA0063009.1 (Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 575.9 bits (1483), Expect = 2.0e-160
Identity = 281/290 (96.90%), Postives = 283/290 (97.59%), Query Frame = 0


Query: 1   MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDIAKPTKQDKEDDGKFIER 60
           MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDIAKPTKQDKEDDGKF ER
Sbjct: 210 MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDIAKPTKQDKEDDGKFSER 269

Query: 61  LEEWDSKNHQIITWLSNTTIPAIHTQFDAFESAKELWDFLFTRFKSVGLAHYYQLHNNLV 120
           LEEWDSKNHQIITWLSNT+I AIHTQFDAFESA+ELWDFL TRFKSVGLAHYYQLHNNLV
Sbjct: 270 LEEWDSKNHQIITWLSNTSIHAIHTQFDAFESAQELWDFLSTRFKSVGLAHYYQLHNNLV 329

Query: 121 NLNQEAGQSVNEYLAVLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVRAALLHRSPL 180
           NLNQEAGQSVNEYLAVLQPIWTQLDQA ISKDHLRLIKVLMGL PEYESVRAALLHRSPL
Sbjct: 330 NLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLPPEYESVRAALLHRSPL 389

Query: 181 PSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE 240
           PSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE
Sbjct: 390 PSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE 449

Query: 241 CRYCHKPGHILDNCPIKPPRPRSYSTRAKNFTKPRNSSVVAATLDNPTTP 291
           CRYCHKPGHILDNCPIKPPRPRSYSTRAKNFTK RN SVVAATLDNPTTP
Sbjct: 450 CRYCHKPGHILDNCPIKPPRPRSYSTRAKNFTKSRNFSVVAATLDNPTTP 499

[Close]

BLAST of Cmc10g0283391 vs. NCBI nr
Match: TYK16338.1 (uncharacterized protein E5676_scaffold21G001200 [Cucumis melo var. makuwa])

HSP 1 Score: 571.6 bits (1472), Expect = 3.8e-159
Identity = 278/290 (95.86%), Postives = 281/290 (96.90%), Query Frame = 0


Query: 1   MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDIAKPTKQDKEDDGKFIER 60
           MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIV GDIAKPTKQDKEDDGKF ER
Sbjct: 209 MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVKGDIAKPTKQDKEDDGKFSER 268

Query: 61  LEEWDSKNHQIITWLSNTTIPAIHTQFDAFESAKELWDFLFTRFKSVGLAHYYQLHNNLV 120
           LEEWDSKNHQIITWLSNT+IPAIHTQFDAFESA+ELWDFL TRFKSVGLAHYYQLHNNLV
Sbjct: 269 LEEWDSKNHQIITWLSNTSIPAIHTQFDAFESAQELWDFLSTRFKSVGLAHYYQLHNNLV 328

Query: 121 NLNQEAGQSVNEYLAVLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVRAALLHRSPL 180
           NLNQEAGQSVNEYLAVLQPIWTQLD+A ISKDHLRLIKV MGL PEYESVRAALLHRSPL
Sbjct: 329 NLNQEAGQSVNEYLAVLQPIWTQLDKAKISKDHLRLIKVFMGLPPEYESVRAALLHRSPL 388

Query: 181 PSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE 240
            SLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE
Sbjct: 389 TSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE 448

Query: 241 CRYCHKPGHILDNCPIKPPRPRSYSTRAKNFTKPRNSSVVAATLDNPTTP 291
           CRYCHKPGHILDNCPIKPPRPRSYS RAKNFTKPRN SVVAATLDNPTTP
Sbjct: 449 CRYCHKPGHILDNCPIKPPRPRSYSKRAKNFTKPRNFSVVAATLDNPTTP 498

[Close]

BLAST of Cmc10g0283391 vs. NCBI nr
Match: KAA0037745.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 558.5 bits (1438), Expect = 3.3e-155
Identity = 269/290 (92.76%), Postives = 276/290 (95.17%), Query Frame = 0


Query: 1   MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDIAKPTKQDKEDDGKFIER 60
           MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDI KPTKQDKEDD KFIER
Sbjct: 1   MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDITKPTKQDKEDDSKFIER 60

Query: 61  LEEWDSKNHQIITWLSNTTIPAIHTQFDAFESAKELWDFLFTRFKSVGLAHYYQLHNNLV 120
           LEEWDSKNHQIITWLSNT+IPAIHTQFDAFE+AKELW+FL TRFKSVGLAHYYQLHN+LV
Sbjct: 61  LEEWDSKNHQIITWLSNTSIPAIHTQFDAFENAKELWNFLSTRFKSVGLAHYYQLHNSLV 120

Query: 121 NLNQEAGQSVNEYLAVLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVRAALLHRSPL 180
           NLNQEAGQSVNEYLAVLQPIWTQLDQA ISKDHLRLIKVLMGLRPEYESVRAALLHRSPL
Sbjct: 121 NLNQEAGQSVNEYLAVLQPIWTQLDQATISKDHLRLIKVLMGLRPEYESVRAALLHRSPL 180

Query: 181 PSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE 240
           PSLDAAIQEILFEE+RLGINLSKHSD VLASTYSPPGASSTFCKNCKLTGHKFI+CPKIE
Sbjct: 181 PSLDAAIQEILFEERRLGINLSKHSDAVLASTYSPPGASSTFCKNCKLTGHKFINCPKIE 240

Query: 241 CRYCHKPGHILDNCPIKPPRPRSYSTRAKNFTKPRNSSVVAATLDNPTTP 291
           CRYCHKPGHILDNCPIKPPRPR+YSTRAKNFTKP NSS     LD  T P
Sbjct: 241 CRYCHKPGHILDNCPIKPPRPRNYSTRAKNFTKPSNSSAATVALDKSTIP 290

[Close]

BLAST of Cmc10g0283391 vs. NCBI nr
Match: TYK19656.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 555.8 bits (1431), Expect = 2.2e-154
Identity = 268/290 (92.41%), Postives = 275/290 (94.83%), Query Frame = 0


Query: 1   MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDIAKPTKQDKEDDGKFIER 60
           MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDI KPTKQDKEDD KFIER
Sbjct: 1   MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDITKPTKQDKEDDSKFIER 60

Query: 61  LEEWDSKNHQIITWLSNTTIPAIHTQFDAFESAKELWDFLFTRFKSVGLAHYYQLHNNLV 120
           LEEWDSKNHQIITWLSNT+IPAIHTQFDAFE+AKELW+FL TRFKSVGLAHYYQLHN+LV
Sbjct: 61  LEEWDSKNHQIITWLSNTSIPAIHTQFDAFENAKELWNFLSTRFKSVGLAHYYQLHNSLV 120

Query: 121 NLNQEAGQSVNEYLAVLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVRAALLHRSPL 180
           NLNQEAGQSVNEYLAVLQPIWTQLDQA ISKDHLRLIKVLMGLRPEYESVRAALLHRSPL
Sbjct: 121 NLNQEAGQSVNEYLAVLQPIWTQLDQATISKDHLRLIKVLMGLRPEYESVRAALLHRSPL 180

Query: 181 PSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE 240
           PSLDAAIQEILFEE+RLGINLSKHSD VLASTYSPPGASSTFCKNCKLTGHKFI+CPKIE
Sbjct: 181 PSLDAAIQEILFEERRLGINLSKHSDAVLASTYSPPGASSTFCKNCKLTGHKFINCPKIE 240

Query: 241 CRYCHKPGHILDNCPIKPPRPRSYSTRAKNFTKPRNSSVVAATLDNPTTP 291
           CRYCHKPGHILDNCPIKPPRPR+YSTRAKNFTKP NSS      D  T P
Sbjct: 241 CRYCHKPGHILDNCPIKPPRPRNYSTRAKNFTKPSNSSAATVAPDKSTIP 290

[Close]

BLAST of Cmc10g0283391 vs. ExPASy TrEMBL
Match: A0A5A7V9Z8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold99G00670 PE=4 SV=1)

HSP 1 Score: 581.6 bits (1498), Expect = 1.8e-162
Identity = 282/290 (97.24%), Postives = 285/290 (98.28%), Query Frame = 0


Query: 1   MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDIAKPTKQDKEDDGKFIER 60
           MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDIAKPTKQDKEDDGKFIER
Sbjct: 1   MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDIAKPTKQDKEDDGKFIER 60

Query: 61  LEEWDSKNHQIITWLSNTTIPAIHTQFDAFESAKELWDFLFTRFKSVGLAHYYQLHNNLV 120
           LEEWDSKNHQIITWLSNT+IPAIHTQFDAFESAKELWDFL TRFKSVGLAHYYQLHNNLV
Sbjct: 61  LEEWDSKNHQIITWLSNTSIPAIHTQFDAFESAKELWDFLSTRFKSVGLAHYYQLHNNLV 120

Query: 121 NLNQEAGQSVNEYLAVLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVRAALLHRSPL 180
           NLNQEAGQSVNEYL VLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVRAALLHRSPL
Sbjct: 121 NLNQEAGQSVNEYLVVLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVRAALLHRSPL 180

Query: 181 PSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE 240
           PSLDAAIQEILFEEKRLGINLS +SDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE
Sbjct: 181 PSLDAAIQEILFEEKRLGINLSNYSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE 240

Query: 241 CRYCHKPGHILDNCPIKPPRPRSYSTRAKNFTKPRNSSVVAATLDNPTTP 291
           CRYCHKPGHILDNCPIKPP+PRSYSTRAK FTKPRNS VVAATLDNPTTP
Sbjct: 241 CRYCHKPGHILDNCPIKPPQPRSYSTRAKTFTKPRNSFVVAATLDNPTTP 290

[Close]

BLAST of Cmc10g0283391 vs. ExPASy TrEMBL
Match: A0A5A7VBM6 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001110 PE=4 SV=1)

HSP 1 Score: 575.9 bits (1483), Expect = 9.7e-161
Identity = 281/290 (96.90%), Postives = 283/290 (97.59%), Query Frame = 0


Query: 1   MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDIAKPTKQDKEDDGKFIER 60
           MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDIAKPTKQDKEDDGKF ER
Sbjct: 210 MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDIAKPTKQDKEDDGKFSER 269

Query: 61  LEEWDSKNHQIITWLSNTTIPAIHTQFDAFESAKELWDFLFTRFKSVGLAHYYQLHNNLV 120
           LEEWDSKNHQIITWLSNT+I AIHTQFDAFESA+ELWDFL TRFKSVGLAHYYQLHNNLV
Sbjct: 270 LEEWDSKNHQIITWLSNTSIHAIHTQFDAFESAQELWDFLSTRFKSVGLAHYYQLHNNLV 329

Query: 121 NLNQEAGQSVNEYLAVLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVRAALLHRSPL 180
           NLNQEAGQSVNEYLAVLQPIWTQLDQA ISKDHLRLIKVLMGL PEYESVRAALLHRSPL
Sbjct: 330 NLNQEAGQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLPPEYESVRAALLHRSPL 389

Query: 181 PSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE 240
           PSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE
Sbjct: 390 PSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE 449

Query: 241 CRYCHKPGHILDNCPIKPPRPRSYSTRAKNFTKPRNSSVVAATLDNPTTP 291
           CRYCHKPGHILDNCPIKPPRPRSYSTRAKNFTK RN SVVAATLDNPTTP
Sbjct: 450 CRYCHKPGHILDNCPIKPPRPRSYSTRAKNFTKSRNFSVVAATLDNPTTP 499

[Close]

BLAST of Cmc10g0283391 vs. ExPASy TrEMBL
Match: A0A5D3CYJ2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001200 PE=4 SV=1)

HSP 1 Score: 571.6 bits (1472), Expect = 1.8e-159
Identity = 278/290 (95.86%), Postives = 281/290 (96.90%), Query Frame = 0


Query: 1   MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDIAKPTKQDKEDDGKFIER 60
           MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIV GDIAKPTKQDKEDDGKF ER
Sbjct: 209 MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVKGDIAKPTKQDKEDDGKFSER 268

Query: 61  LEEWDSKNHQIITWLSNTTIPAIHTQFDAFESAKELWDFLFTRFKSVGLAHYYQLHNNLV 120
           LEEWDSKNHQIITWLSNT+IPAIHTQFDAFESA+ELWDFL TRFKSVGLAHYYQLHNNLV
Sbjct: 269 LEEWDSKNHQIITWLSNTSIPAIHTQFDAFESAQELWDFLSTRFKSVGLAHYYQLHNNLV 328

Query: 121 NLNQEAGQSVNEYLAVLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVRAALLHRSPL 180
           NLNQEAGQSVNEYLAVLQPIWTQLD+A ISKDHLRLIKV MGL PEYESVRAALLHRSPL
Sbjct: 329 NLNQEAGQSVNEYLAVLQPIWTQLDKAKISKDHLRLIKVFMGLPPEYESVRAALLHRSPL 388

Query: 181 PSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE 240
            SLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE
Sbjct: 389 TSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE 448

Query: 241 CRYCHKPGHILDNCPIKPPRPRSYSTRAKNFTKPRNSSVVAATLDNPTTP 291
           CRYCHKPGHILDNCPIKPPRPRSYS RAKNFTKPRN SVVAATLDNPTTP
Sbjct: 449 CRYCHKPGHILDNCPIKPPRPRSYSKRAKNFTKPRNFSVVAATLDNPTTP 498

[Close]

BLAST of Cmc10g0283391 vs. ExPASy TrEMBL
Match: A0A5A7T8F2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00410 PE=4 SV=1)

HSP 1 Score: 558.5 bits (1438), Expect = 1.6e-155
Identity = 269/290 (92.76%), Postives = 276/290 (95.17%), Query Frame = 0


Query: 1   MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDIAKPTKQDKEDDGKFIER 60
           MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDI KPTKQDKEDD KFIER
Sbjct: 1   MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDITKPTKQDKEDDSKFIER 60

Query: 61  LEEWDSKNHQIITWLSNTTIPAIHTQFDAFESAKELWDFLFTRFKSVGLAHYYQLHNNLV 120
           LEEWDSKNHQIITWLSNT+IPAIHTQFDAFE+AKELW+FL TRFKSVGLAHYYQLHN+LV
Sbjct: 61  LEEWDSKNHQIITWLSNTSIPAIHTQFDAFENAKELWNFLSTRFKSVGLAHYYQLHNSLV 120

Query: 121 NLNQEAGQSVNEYLAVLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVRAALLHRSPL 180
           NLNQEAGQSVNEYLAVLQPIWTQLDQA ISKDHLRLIKVLMGLRPEYESVRAALLHRSPL
Sbjct: 121 NLNQEAGQSVNEYLAVLQPIWTQLDQATISKDHLRLIKVLMGLRPEYESVRAALLHRSPL 180

Query: 181 PSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE 240
           PSLDAAIQEILFEE+RLGINLSKHSD VLASTYSPPGASSTFCKNCKLTGHKFI+CPKIE
Sbjct: 181 PSLDAAIQEILFEERRLGINLSKHSDAVLASTYSPPGASSTFCKNCKLTGHKFINCPKIE 240

Query: 241 CRYCHKPGHILDNCPIKPPRPRSYSTRAKNFTKPRNSSVVAATLDNPTTP 291
           CRYCHKPGHILDNCPIKPPRPR+YSTRAKNFTKP NSS     LD  T P
Sbjct: 241 CRYCHKPGHILDNCPIKPPRPRNYSTRAKNFTKPSNSSAATVALDKSTIP 290

[Close]

BLAST of Cmc10g0283391 vs. ExPASy TrEMBL
Match: A0A5A7VIT8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00050 PE=4 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 1.0e-154
Identity = 268/290 (92.41%), Postives = 275/290 (94.83%), Query Frame = 0


Query: 1   MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDIAKPTKQDKEDDGKFIER 60
           MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDI KPTKQDKEDD KFIER
Sbjct: 1   MEKSEIARPISTILDGSNYITWANQMKSFLIGRKLWRIVTGDITKPTKQDKEDDSKFIER 60

Query: 61  LEEWDSKNHQIITWLSNTTIPAIHTQFDAFESAKELWDFLFTRFKSVGLAHYYQLHNNLV 120
           LEEWDSKNHQIITWLSNT+IPAIHTQFDAFE+AKELW+FL TRFKSVGLAHYYQLHN+LV
Sbjct: 61  LEEWDSKNHQIITWLSNTSIPAIHTQFDAFENAKELWNFLSTRFKSVGLAHYYQLHNSLV 120

Query: 121 NLNQEAGQSVNEYLAVLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVRAALLHRSPL 180
           NLNQEAGQSVNEYLAVLQPIWTQLDQA ISKDHLRLIKVLMGLRPEYESVRAALLHRSPL
Sbjct: 121 NLNQEAGQSVNEYLAVLQPIWTQLDQATISKDHLRLIKVLMGLRPEYESVRAALLHRSPL 180

Query: 181 PSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIE 240
           PSLDAAIQEILFEE+RLGINLSKHSD VLASTYSPPGASSTFCKNCKLTGHKFI+CPKIE
Sbjct: 181 PSLDAAIQEILFEERRLGINLSKHSDAVLASTYSPPGASSTFCKNCKLTGHKFINCPKIE 240

Query: 241 CRYCHKPGHILDNCPIKPPRPRSYSTRAKNFTKPRNSSVVAATLDNPTTP 291
           CRYCHKPGHILDNCPIKPPRPR+YSTRAKNFTKP NSS      D  T P
Sbjct: 241 CRYCHKPGHILDNCPIKPPRPRNYSTRAKNFTKPSNSSAATVAPDKSTIP 290

The following BLAST results are available for this feature:

BLAST of Cmc10g0283391 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064060.1	3.7e-162	97.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0063009.1	2.0e-160	96.90	Integrase, catalytic core [Cucumis melo var. makuwa]	[more]
TYK16338.1	3.8e-159	95.86	uncharacterized protein E5676_scaffold21G001200 [Cucumis melo var. makuwa]	[more]
KAA0037745.1	3.3e-155	92.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK19656.1	2.2e-154	92.41	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc10g0283391 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc10g0283391 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V9Z8	1.8e-162	97.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VBM6	9.7e-161	96.90	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5D3CYJ2	1.8e-159	95.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T8F2	1.6e-155	92.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VIT8	1.0e-154	92.41	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc10g0283391 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 222..238 e-value: 0.2 score: 15.6 coord: 240..256 e-value: 0.025 score: 21.1
None	No IPR available	GENE3D	4.10.60.10		coord: 209..261 e-value: 6.4E-8 score: 34.2
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 64..196 e-value: 2.6E-12 score: 46.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 265..290
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 10..254
None	No IPR available	PANTHER	PTHR34222:SF43	GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 10..254
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 14..39 e-value: 8.1E-7 score: 28.6
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 217..257

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0283391.1	Cmc10g0283391.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0008270	zinc ion binding