Cmc10g0280961 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0280961
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr10: 19090620 .. 19091555 (-)
RNA-Seq Expression	Cmc10g0280961
Synteny	Cmc10g0280961

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGGAAGTAAATCAATGTTCGTGGAACTTGATGAATCTTTTGGTGGCGTTATCGTATTTGGTGATGCCACGAAAATTCCAGTTAAAGGAAAAGGTAAAATTTTGATCAATTTGAAGAATGAGAAGCATGAGTTTATCTCTAATGTTTATTATGTGCCTAATATGAAGAACAACATTTTGAGTTTGGGGCAACTCTTAGAGAAAGGCTATAATATTTTAATGAAGGATTATAGTCTTTTGATAAGAGATAATCATGACAAAATTATTGCTAAAGTACAAATGACGAAAAATAGAATGTTTTTATTAAACATTCAAACTGATGTTGCTAAATGTTTAAAGTCATGTTTGAAAGATCCCAATTGGATTTGGCACTTGAGATTTGGGCATTTGAACTTTGCTGGCTTAAGATTATTAGCCAGGAAGAACATGGTGAAAGGGTTGCCATATGTCAAACATCCAAATCAACTTTGTGAAGGTTGTCTTCATGGCAAACAATCAAGGAAGAGTTTTCCACAAGAATCATCTTCGAGAGCAAGGAGACCACTGGAGTTAGTTCACACGGATCTTTGTGGATCGATCAAACCAAGTTCTTTTGGTAACAATAATTATTTCTTATTATTTATTGATGATTTCAACCGAAAAACTTGGGTTTACTTTGTCAAGGAGAAATCAGAAGTATTTGGCATGTTCAAGAGATTTAAAGCTCTTGTTGAAAAAGAAAGTGGTTATTACATTAAAGCTTTGAAATCAGAGAGGGGAGGTGAATTCACTTCAAATGAATTCAAAACTTTTTGCGCAGAAAATGGAATCTGTCGACCTCTGACAGTTCCATTTACTCCTCAACAAAATGGTATTGTTGAAAGGAAGAAGCGAACAATACTTAACATGGCTCGAAGCATGTTGAAGTGCAAGAAGATGCCAAAAGAATTTTGA

mRNA sequence

ATGTGTGGAAGTAAATCAATGTTCGTGGAACTTGATGAATCTTTTGGTGGCGTTATCGTATTTGGTGATGCCACGAAAATTCCAGTTAAAGGAAAAGGTAAAATTTTGATCAATTTGAAGAATGAGAAGCATGAGTTTATCTCTAATGTTTATTATGTGCCTAATATGAAGAACAACATTTTGAGTTTGGGGCAACTCTTAGAGAAAGGCTATAATATTTTAATGAAGGATTATAGTCTTTTGATAAGAGATAATCATGACAAAATTATTGCTAAAGTACAAATGACGAAAAATAGAATGTTTTTATTAAACATTCAAACTGATGTTGCTAAATGTTTAAAGTCATGTTTGAAAGATCCCAATTGGATTTGGCACTTGAGATTTGGGCATTTGAACTTTGCTGGCTTAAGATTATTAGCCAGGAAGAACATGGTGAAAGGGTTGCCATATGTCAAACATCCAAATCAACTTTGTGAAGGTTGTCTTCATGGCAAACAATCAAGGAAGAGTTTTCCACAAGAATCATCTTCGAGAGCAAGGAGACCACTGGAGTTAGTTCACACGGATCTTTGTGGATCGATCAAACCAAGTTCTTTTGGTAACAATAATTATTTCTTATTATTTATTGATGATTTCAACCGAAAAACTTGGGTTTACTTTGTCAAGGAGAAATCAGAAGTATTTGGCATGTTCAAGAGATTTAAAGCTCTTGTTGAAAAAGAAAGTGGTTATTACATTAAAGCTTTGAAATCAGAGAGGGGAGGTGAATTCACTTCAAATGAATTCAAAACTTTTTGCGCAGAAAATGGAATCTGTCGACCTCTGACAGTTCCATTTACTCCTCAACAAAATGGTATTGTTGAAAGGAAGAAGCGAACAATACTTAACATGGCTCGAAGCATGTTGAAGTGCAAGAAGATGCCAAAAGAATTTTGA

Coding sequence (CDS)

ATGTGTGGAAGTAAATCAATGTTCGTGGAACTTGATGAATCTTTTGGTGGCGTTATCGTATTTGGTGATGCCACGAAAATTCCAGTTAAAGGAAAAGGTAAAATTTTGATCAATTTGAAGAATGAGAAGCATGAGTTTATCTCTAATGTTTATTATGTGCCTAATATGAAGAACAACATTTTGAGTTTGGGGCAACTCTTAGAGAAAGGCTATAATATTTTAATGAAGGATTATAGTCTTTTGATAAGAGATAATCATGACAAAATTATTGCTAAAGTACAAATGACGAAAAATAGAATGTTTTTATTAAACATTCAAACTGATGTTGCTAAATGTTTAAAGTCATGTTTGAAAGATCCCAATTGGATTTGGCACTTGAGATTTGGGCATTTGAACTTTGCTGGCTTAAGATTATTAGCCAGGAAGAACATGGTGAAAGGGTTGCCATATGTCAAACATCCAAATCAACTTTGTGAAGGTTGTCTTCATGGCAAACAATCAAGGAAGAGTTTTCCACAAGAATCATCTTCGAGAGCAAGGAGACCACTGGAGTTAGTTCACACGGATCTTTGTGGATCGATCAAACCAAGTTCTTTTGGTAACAATAATTATTTCTTATTATTTATTGATGATTTCAACCGAAAAACTTGGGTTTACTTTGTCAAGGAGAAATCAGAAGTATTTGGCATGTTCAAGAGATTTAAAGCTCTTGTTGAAAAAGAAAGTGGTTATTACATTAAAGCTTTGAAATCAGAGAGGGGAGGTGAATTCACTTCAAATGAATTCAAAACTTTTTGCGCAGAAAATGGAATCTGTCGACCTCTGACAGTTCCATTTACTCCTCAACAAAATGGTATTGTTGAAAGGAAGAAGCGAACAATACTTAACATGGCTCGAAGCATGTTGAAGTGCAAGAAGATGCCAAAAGAATTTTGA

Protein sequence

MCGSKSMFVELDESFGGVIVFGDATKIPVKGKGKILINLKNEKHEFISNVYYVPNMKNNILSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAKCLKSCLKDPNWIWHLRFGHLNFAGLRLLARKNMVKGLPYVKHPNQLCEGCLHGKQSRKSFPQESSSRARRPLELVHTDLCGSIKPSSFGNNNYFLLFIDDFNRKTWVYFVKEKSEVFGMFKRFKALVEKESGYYIKALKSERGGEFTSNEFKTFCAENGICRPLTVPFTPQQNGIVERKKRTILNMARSMLKCKKMPKEF

Homology

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BLAST of Cmc10g0280961 vs. NCBI nr
Match: TYK29027.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 597.8 bits (1540), Expect = 5.3e-167
Identity = 292/311 (93.89%), Postives = 299/311 (96.14%), Query Frame = 0


Query: 1   MCGSKSMFVELDESFGGVIVFGDATKIPVKGKGKILINLKNEKHEFISNVYYVPNMKNNI 60
           MCGSKSMFVELDES GG IVFGDATKIPVKGKGKILINLKN KHEFISNVYYVPNMKNNI
Sbjct: 232 MCGSKSMFVELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 291

Query: 61  LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAKCLKSCLKDP 120
           LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVA+CLKSCLKDP
Sbjct: 292 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 351

Query: 121 NWIWHLRFGHLNFAGLRLLARKNMVKGLPYVKHPNQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNF GLRLLARKNMVKGLPYVK P+QLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 352 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 411

Query: 181 RPLELVHTDLCGSIKPSSFGNNNYFLLFIDDFNRKTWVYFVKEKSEVFGMFKRFKALVEK 240
           RPLELVHTDLCG IKPSSFG NNYFLLFIDDF+RKTWVYFVKEKSEVFGMFKRFKALVEK
Sbjct: 412 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 471

Query: 241 ESGYYIKALKSERGGEFTSNEFKTFCAENGICRPLTVPFTPQQNGIVERKKRTILNMARS 300
           ESGYYIKAL+S+RGGEFTSNEFKTFC ENGI R +TVPFTPQQNG+VERK RTILNMARS
Sbjct: 472 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 531

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 532 MLKCKKMPKEF 542

[Close]

BLAST of Cmc10g0280961 vs. NCBI nr
Match: TYK18362.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 597.4 bits (1539), Expect = 6.9e-167
Identity = 291/311 (93.57%), Postives = 299/311 (96.14%), Query Frame = 0


Query: 1   MCGSKSMFVELDESFGGVIVFGDATKIPVKGKGKILINLKNEKHEFISNVYYVPNMKNNI 60
           MCGSKSMF+ELDES GG IVFGDATKIPVKGKGKILINLKN KHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAKCLKSCLKDP 120
           LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFAGLRLLARKNMVKGLPYVKHPNQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNF GLRLLARKNMVKGLPYVK P+QLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RPLELVHTDLCGSIKPSSFGNNNYFLLFIDDFNRKTWVYFVKEKSEVFGMFKRFKALVEK 240
           RPLELVHTDLCG IKPSSFG NNYFLLFIDDF+RKTWVYFVKEKSEVFGMFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYIKALKSERGGEFTSNEFKTFCAENGICRPLTVPFTPQQNGIVERKKRTILNMARS 300
           ESGYYIKAL+S+RGGEFTSNEFKTFC ENGI R +TVPFTPQQNG+VERK RTILNMARS
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 632 MLKCKKMPKEF 642

[Close]

BLAST of Cmc10g0280961 vs. NCBI nr
Match: KAA0047979.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 597.4 bits (1539), Expect = 6.9e-167
Identity = 291/311 (93.57%), Postives = 299/311 (96.14%), Query Frame = 0


Query: 1   MCGSKSMFVELDESFGGVIVFGDATKIPVKGKGKILINLKNEKHEFISNVYYVPNMKNNI 60
           MCGSKSMF+ELDES GG IVFGDATKIPVKGKGKILINLKN KHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAKCLKSCLKDP 120
           LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFAGLRLLARKNMVKGLPYVKHPNQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNF GLRLLARKNMVKGLPYVK P+QLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RPLELVHTDLCGSIKPSSFGNNNYFLLFIDDFNRKTWVYFVKEKSEVFGMFKRFKALVEK 240
           RPLELVHTDLCG IKPSSFG NNYFLLFIDDF+RKTWVYFVKEKSEVFGMFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYIKALKSERGGEFTSNEFKTFCAENGICRPLTVPFTPQQNGIVERKKRTILNMARS 300
           ESGYYIKAL+S+RGGEFTSNEFKTFC ENGI R +TVPFTPQQNG+VERK RTILNMARS
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 632 MLKCKKMPKEF 642

[Close]

BLAST of Cmc10g0280961 vs. NCBI nr
Match: TYJ96309.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 597.4 bits (1539), Expect = 6.9e-167
Identity = 291/311 (93.57%), Postives = 299/311 (96.14%), Query Frame = 0


Query: 1   MCGSKSMFVELDESFGGVIVFGDATKIPVKGKGKILINLKNEKHEFISNVYYVPNMKNNI 60
           MCGSKSMF+ELDES GG IVFGDATKIPVKGKGKILINLKN KHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAKCLKSCLKDP 120
           LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFAGLRLLARKNMVKGLPYVKHPNQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNF GLRLLARKNMVKGLPYVK P+QLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RPLELVHTDLCGSIKPSSFGNNNYFLLFIDDFNRKTWVYFVKEKSEVFGMFKRFKALVEK 240
           RPLELVHTDLCG IKPSSFG NNYFLLFIDDF+RKTWVYFVKEKSEVFGMFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYIKALKSERGGEFTSNEFKTFCAENGICRPLTVPFTPQQNGIVERKKRTILNMARS 300
           ESGYYIKAL+S+RGGEFTSNEFKTFC ENGI R +TVPFTPQQNG+VERK RTILNMARS
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 632 MLKCKKMPKEF 642

[Close]

BLAST of Cmc10g0280961 vs. NCBI nr
Match: TYK06895.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 597.4 bits (1539), Expect = 6.9e-167
Identity = 291/311 (93.57%), Postives = 299/311 (96.14%), Query Frame = 0


Query: 1   MCGSKSMFVELDESFGGVIVFGDATKIPVKGKGKILINLKNEKHEFISNVYYVPNMKNNI 60
           MCGSKSMF+ELDES GG IVFGDATKIPVKGKGKILINLKN KHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAKCLKSCLKDP 120
           LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFAGLRLLARKNMVKGLPYVKHPNQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNF GLRLLARKNMVKGLPYVK P+QLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RPLELVHTDLCGSIKPSSFGNNNYFLLFIDDFNRKTWVYFVKEKSEVFGMFKRFKALVEK 240
           RPLELVHTDLCG IKPSSFG NNYFLLFIDDF+RKTWVYFVKEKSEVFGMFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYIKALKSERGGEFTSNEFKTFCAENGICRPLTVPFTPQQNGIVERKKRTILNMARS 300
           ESGYYIKAL+S+RGGEFTSNEFKTFC ENGI R +TVPFTPQQNG+VERK RTILNMARS
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 632 MLKCKKMPKEF 642

[Close]

BLAST of Cmc10g0280961 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 7.4e-47
Identity = 109/296 (36.82%), Postives = 170/296 (57.43%), Query Frame = 0


Query: 17  GVIVFGDATKIPVKGKGKILINLKNEKHEFISNVYYVPNMKNNILSLGQLLEKGYNILMK 76
           G +  G+ +   + G G I I         + +V +VP+++ N++S   L   GY     
Sbjct: 320 GTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFA 379

Query: 77  DYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAKCLKSCLKDPNWIWHLRFGHLNFAGL 136
           +    +      +IAK  + +  ++  N +    +   +  +    +WH R GH++  GL
Sbjct: 380 NQKWRLTKG-SLVIAK-GVARGTLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGL 439

Query: 137 RLLARKNMVKGLPYVKHPN-QLCEGCLHGKQSRKSFPQESSSRARRPLELVHTDLCGSIK 196
           ++LA+K+++    Y K    + C+ CL GKQ R SF Q SS R    L+LV++D+CG ++
Sbjct: 440 QILAKKSLIS---YAKGTTVKPCDYCLFGKQHRVSF-QTSSERKLNILDLVYSDVCGPME 499

Query: 197 PSSFGNNNYFLLFIDDFNRKTWVYFVKEKSEVFGMFKRFKALVEKESGYYIKALKSERGG 256
             S G N YF+ FIDD +RK WVY +K K +VF +F++F ALVE+E+G  +K L+S+ GG
Sbjct: 500 IESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGG 559

Query: 257 EFTSNEFKTFCAENGICRPLTVPFTPQQNGIVERKKRTILNMARSMLKCKKMPKEF 312
           E+TS EF+ +C+ +GI    TVP TPQ NG+ ER  RTI+   RSML+  K+PK F
Sbjct: 560 EYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSF 609

[Close]

BLAST of Cmc10g0280961 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-38
Identity = 96/280 (34.29%), Postives = 150/280 (53.57%), Query Frame = 0


Query: 36  LINLKNEKHEFISNVYYVPNMKNNILSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQM 95
           ++ L+N+    + +V +      N++S+ +L E G +I      + I  N   ++    M
Sbjct: 334 IVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGM 393

Query: 96  TKNRMFLLNIQTDVAKCLKSCLKDPNWIWHLRFGHLNFAGLRLLARKNMVKG---LPYVK 155
             N + ++N Q   A  + +  K+   +WH RFGH++   L  + RKNM      L  ++
Sbjct: 394 L-NNVPVINFQ---AYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLE 453

Query: 156 HPNQLCEGCLHGKQSRKSFPQ-ESSSRARRPLELVHTDLCGSIKPSSFGNNNYFLLFIDD 215
              ++CE CL+GKQ+R  F Q +  +  +RPL +VH+D+CG I P +  + NYF++F+D 
Sbjct: 454 LSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQ 513

Query: 216 FNRKTWVYFVKEKSEVFGMFKRFKALVEKESGYYIKALKSERGGEFTSNEFKTFCAENGI 275
           F      Y +K KS+VF MF+ F A  E      +  L  + G E+ SNE + FC + GI
Sbjct: 514 FTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGI 573

Query: 276 CRPLTVPFTPQQNGIVERKKRTILNMARSMLKCKKMPKEF 312
              LTVP TPQ NG+ ER  RTI   AR+M+   K+ K F
Sbjct: 574 SYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSF 609

[Close]

BLAST of Cmc10g0280961 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.7e-25
Identity = 84/301 (27.91%), Postives = 147/301 (48.84%), Query Frame = 0


Query: 16  GGVIVFGDATKIPVKGKGKILINLKNEKHEFISNVYYVPNMKNNILSLGQLLEKG-YNIL 75
           G  ++  D + IP+   G   +   +   + ++ V YVPN+  N++S+ +L      ++ 
Sbjct: 336 GDDVMIADGSTIPITHTGSASLPTSSRSLD-LNKVLYVPNIHKNLISVYRLCNTNRVSVE 395

Query: 76  MKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTD--VAKCLKSCLKDPNWIWHLRFGHLN 135
               S  ++D +  +      TK+ ++   I +   V+     C K  +  WH R GH +
Sbjct: 396 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPS 455

Query: 136 FAGLRLLARKNMVKGLPYVKHPNQL--CEGCLHGKQSRKSFPQESSSRARRPLELVHTDL 195
            A L  +   +    LP +   ++L  C  C   K  +  F   S+  + +PLE +++D+
Sbjct: 456 LAILNSVISNH---SLPVLNPSHKLLSCSDCFINKSHKVPF-SNSTITSSKPLEYIYSDV 515

Query: 196 CGSIKPSSFGNNNYFLLFIDDFNRKTWVYFVKEKSEVFGMFKRFKALVEKESGYYIKALK 255
             S    S  N  Y+++F+D F R TW+Y +K+KS+V   F  FK+LVE      I  L 
Sbjct: 516 WSS-PILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLY 575

Query: 256 SERGGEFTSNEFKTFCAENGICRPLTVPFTPQQNGIVERKKRTILNMARSMLKCKKMPKE 312
           S+ GGEF     + + +++GI    + P TP+ NG+ ERK R I+ M  ++L    +PK 
Sbjct: 576 SDNGGEFV--VLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKT 628

[Close]

BLAST of Cmc10g0280961 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-23
Identity = 83/299 (27.76%), Postives = 143/299 (47.83%), Query Frame = 0


Query: 16  GGVIVFGDATKIPVKGKGKILINLKNEKHEFISNVYYVPNMKNNILSLGQLLE-KGYNIL 75
           G  ++  D + IP+   G   ++ K+     + N+ YVPN+  N++S+ +L    G ++ 
Sbjct: 357 GDDVMVADGSTIPISHTGSTSLSTKSRPLN-LHNILYVPNIHKNLISVYRLCNANGVSVE 416

Query: 76  MKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTD--VAKCLKSCLKDPNWIWHLRFGHLN 135
               S  ++D +  +      TK+ ++   I +   V+       K  +  WH R GH  
Sbjct: 417 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPA 476

Query: 136 FAGLRLLARKNMVKGLPYVKHPNQLCEGCLHGKQSRKSFPQESSSRARRPLELVHTDLCG 195
            + L  +   N    +    H    C  CL  K ++  F Q S+  + RPLE +++D+  
Sbjct: 477 PSILNSVI-SNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQ-STINSTRPLEYIYSDVWS 536

Query: 196 SIKPSSFGNNNYFLLFIDDFNRKTWVYFVKEKSEVFGMFKRFKALVEKESGYYIKALKSE 255
           S    S  N  Y+++F+D F R TW+Y +K+KS+V   F  FK L+E      I    S+
Sbjct: 537 S-PILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSD 596

Query: 256 RGGEFTSNEFKTFCAENGICRPLTVPFTPQQNGIVERKKRTILNMARSMLKCKKMPKEF 312
            GGEF +     + +++GI    + P TP+ NG+ ERK R I+    ++L    +PK +
Sbjct: 597 NGGEFVA--LWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTY 649

[Close]

BLAST of Cmc10g0280961 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.6e-17
Identity = 73/310 (23.55%), Postives = 130/310 (41.94%), Query Frame = 0


Query: 19  IVFGDATKIPVKGKGKILINLKNEKHEFISNVYYVPNMKNNILSLGQLLEKGYNILMKDY 78
           IV      IP+   G +  N +N     I    + PN+  ++LSL +L  +         
Sbjct: 482 IVDAQKQDIPINAIGNLHFNFQNGTKTSI-KALHTPNIAYDLLSLSELANQNITACFTRN 541

Query: 79  SL----------LIRDNHDKIIAKVQMTKNRMFLLNIQTDVAKCLKSCLKDPNWIWHLRF 138
           +L          +++      ++K  +  + +  L I  +V K  KS  K P  + H   
Sbjct: 542 TLERSDGTVLAPIVKHGDFYWLSKKYLIPSHISKLTI-NNVNKS-KSVNKYPYPLIHRML 601

Query: 139 GHLNFAGLRLLARKNMV-----KGLPYVKHPNQLCEGCLHGKQSRKSFPQESS---SRAR 198
           GH NF  ++   +KN V       + +       C  CL GK ++    + S      + 
Sbjct: 602 GHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQESY 661

Query: 199 RPLELVHTDLCGSIKPSSFGNNNYFLLFIDDFNRKTWVYFVKEKSE--VFGMFKRFKALV 258
            P + +HTD+ G +        +YF+ F D+  R  WVY + ++ E  +  +F    A +
Sbjct: 662 EPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFI 721

Query: 259 EKESGYYIKALKSERGGEFTSNEFKTFCAENGICRPLTVPFTPQQNGIVERKKRTILNMA 309
           + +    +  ++ +RG E+T+     F    GI    T     + +G+ ER  RT+LN  
Sbjct: 722 KNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDC 781

[Close]

BLAST of Cmc10g0280961 vs. ExPASy TrEMBL
Match: A0A5D3DYS0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001400 PE=4 SV=1)

HSP 1 Score: 597.8 bits (1540), Expect = 2.6e-167
Identity = 292/311 (93.89%), Postives = 299/311 (96.14%), Query Frame = 0


Query: 1   MCGSKSMFVELDESFGGVIVFGDATKIPVKGKGKILINLKNEKHEFISNVYYVPNMKNNI 60
           MCGSKSMFVELDES GG IVFGDATKIPVKGKGKILINLKN KHEFISNVYYVPNMKNNI
Sbjct: 232 MCGSKSMFVELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 291

Query: 61  LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAKCLKSCLKDP 120
           LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVA+CLKSCLKDP
Sbjct: 292 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 351

Query: 121 NWIWHLRFGHLNFAGLRLLARKNMVKGLPYVKHPNQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNF GLRLLARKNMVKGLPYVK P+QLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 352 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 411

Query: 181 RPLELVHTDLCGSIKPSSFGNNNYFLLFIDDFNRKTWVYFVKEKSEVFGMFKRFKALVEK 240
           RPLELVHTDLCG IKPSSFG NNYFLLFIDDF+RKTWVYFVKEKSEVFGMFKRFKALVEK
Sbjct: 412 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 471

Query: 241 ESGYYIKALKSERGGEFTSNEFKTFCAENGICRPLTVPFTPQQNGIVERKKRTILNMARS 300
           ESGYYIKAL+S+RGGEFTSNEFKTFC ENGI R +TVPFTPQQNG+VERK RTILNMARS
Sbjct: 472 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 531

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 532 MLKCKKMPKEF 542

[Close]

BLAST of Cmc10g0280961 vs. ExPASy TrEMBL
Match: A0A5A7V3X9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003030 PE=4 SV=1)

HSP 1 Score: 597.4 bits (1539), Expect = 3.3e-167
Identity = 291/311 (93.57%), Postives = 299/311 (96.14%), Query Frame = 0


Query: 1   MCGSKSMFVELDESFGGVIVFGDATKIPVKGKGKILINLKNEKHEFISNVYYVPNMKNNI 60
           MCGSKSMF+ELDES GG IVFGDATKIPVKGKGKILINLKN KHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAKCLKSCLKDP 120
           LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFAGLRLLARKNMVKGLPYVKHPNQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNF GLRLLARKNMVKGLPYVK P+QLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RPLELVHTDLCGSIKPSSFGNNNYFLLFIDDFNRKTWVYFVKEKSEVFGMFKRFKALVEK 240
           RPLELVHTDLCG IKPSSFG NNYFLLFIDDF+RKTWVYFVKEKSEVFGMFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYIKALKSERGGEFTSNEFKTFCAENGICRPLTVPFTPQQNGIVERKKRTILNMARS 300
           ESGYYIKAL+S+RGGEFTSNEFKTFC ENGI R +TVPFTPQQNG+VERK RTILNMARS
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 632 MLKCKKMPKEF 642

[Close]

BLAST of Cmc10g0280961 vs. ExPASy TrEMBL
Match: A0A5A7SJX6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G002010 PE=4 SV=1)

HSP 1 Score: 597.4 bits (1539), Expect = 3.3e-167
Identity = 291/311 (93.57%), Postives = 299/311 (96.14%), Query Frame = 0


Query: 1   MCGSKSMFVELDESFGGVIVFGDATKIPVKGKGKILINLKNEKHEFISNVYYVPNMKNNI 60
           MCGSKSMF+ELDES GG IVFGDATKIPVKGKGKILINLKN KHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAKCLKSCLKDP 120
           LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFAGLRLLARKNMVKGLPYVKHPNQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNF GLRLLARKNMVKGLPYVK P+QLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RPLELVHTDLCGSIKPSSFGNNNYFLLFIDDFNRKTWVYFVKEKSEVFGMFKRFKALVEK 240
           RPLELVHTDLCG IKPSSFG NNYFLLFIDDF+RKTWVYFVKEKSEVFGMFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYIKALKSERGGEFTSNEFKTFCAENGICRPLTVPFTPQQNGIVERKKRTILNMARS 300
           ESGYYIKAL+S+RGGEFTSNEFKTFC ENGI R +TVPFTPQQNG+VERK RTILNMARS
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 632 MLKCKKMPKEF 642

[Close]

BLAST of Cmc10g0280961 vs. ExPASy TrEMBL
Match: A0A5A7V308 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00290 PE=4 SV=1)

HSP 1 Score: 597.4 bits (1539), Expect = 3.3e-167
Identity = 291/311 (93.57%), Postives = 299/311 (96.14%), Query Frame = 0


Query: 1   MCGSKSMFVELDESFGGVIVFGDATKIPVKGKGKILINLKNEKHEFISNVYYVPNMKNNI 60
           MCGSKSMF+ELDES GG IVFGDATKIPVKGKGKILINLKN KHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAKCLKSCLKDP 120
           LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFAGLRLLARKNMVKGLPYVKHPNQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNF GLRLLARKNMVKGLPYVK P+QLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RPLELVHTDLCGSIKPSSFGNNNYFLLFIDDFNRKTWVYFVKEKSEVFGMFKRFKALVEK 240
           RPLELVHTDLCG IKPSSFG NNYFLLFIDDF+RKTWVYFVKEKSEVFGMFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYIKALKSERGGEFTSNEFKTFCAENGICRPLTVPFTPQQNGIVERKKRTILNMARS 300
           ESGYYIKAL+S+RGGEFTSNEFKTFC ENGI R +TVPFTPQQNG+VERK RTILNMARS
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 632 MLKCKKMPKEF 642

[Close]

BLAST of Cmc10g0280961 vs. ExPASy TrEMBL
Match: A0A5D3D497 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00810 PE=4 SV=1)

HSP 1 Score: 597.4 bits (1539), Expect = 3.3e-167
Identity = 291/311 (93.57%), Postives = 299/311 (96.14%), Query Frame = 0


Query: 1   MCGSKSMFVELDESFGGVIVFGDATKIPVKGKGKILINLKNEKHEFISNVYYVPNMKNNI 60
           MCGSKSMF+ELDES GG IVFGDATKIPVKGKGKILINLKN KHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAKCLKSCLKDP 120
           LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFAGLRLLARKNMVKGLPYVKHPNQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNF GLRLLARKNMVKGLPYVK P+QLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RPLELVHTDLCGSIKPSSFGNNNYFLLFIDDFNRKTWVYFVKEKSEVFGMFKRFKALVEK 240
           RPLELVHTDLCG IKPSSFG NNYFLLFIDDF+RKTWVYFVKEKSEVFGMFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYIKALKSERGGEFTSNEFKTFCAENGICRPLTVPFTPQQNGIVERKKRTILNMARS 300
           ESGYYIKAL+S+RGGEFTSNEFKTFC ENGI R +TVPFTPQQNG+VERK RTILNMARS
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 632 MLKCKKMPKEF 642

[Close]

BLAST of Cmc10g0280961 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 53.1 bits (126), Expect = 4.5e-07
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 8   FVELDESFGGVIVFGDATKIPVKGKGKILINLKNEKHEFISNVYYVPNMKNNILSLGQLL 67
           F  LD +F   +   D T + V+GKG + I +K  K + I NV +VP +  N+LS G+++
Sbjct: 297 FTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNVIFVPGLNRNVLSFGKMV 356

Query: 68  EKGYNI 74
            K Y+I
Sbjct: 357 SKRYSI 362

[Close]

BLAST of Cmc10g0280961 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 50.8 bits (120), Expect = 2.2e-06
Identity = 25/81 (30.86%), Postives = 39/81 (48.15%), Query Frame = 0


Query: 113 LKSCLKDPNWIWHLRFGHLNFAGLRLLARKNMVKGLPYVKHPNQLCEGCLHGKQSRKSFP 172
           L    KD   +WH R  H++  G+ LL +K  +          + CE C++GK  R +F 
Sbjct: 61  LAETAKDETRLWHSRLAHMSQRGMELLVKKGFLDSSKV--SSLKFCEDCIYGKTHRVNF- 120

Query: 173 QESSSRARRPLELVHTDLCGS 194
                  + PL+ VH+DL G+
Sbjct: 121 STGQHTTKNPLDYVHSDLWGA 138

The following BLAST results are available for this feature:

BLAST of Cmc10g0280961 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29027.1	5.3e-167	93.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK18362.1	6.9e-167	93.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0047979.1	6.9e-167	93.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYJ96309.1	6.9e-167	93.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK06895.1	6.9e-167	93.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc10g0280961 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.4e-47	36.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.2e-38	34.29	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	4.7e-25	27.91	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.2e-23	27.76	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	1.6e-17	23.55	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc10g0280961 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYS0	2.6e-167	93.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V3X9	3.3e-167	93.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SJX6	3.3e-167	93.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V308	3.3e-167	93.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3D497	3.3e-167	93.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc10g0280961 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21000.1	4.5e-07	37.88	Gag-Pol-related retrotransposon family protein	[more]
ATMG00300.1	2.2e-06	30.86	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 112..166 e-value: 2.3E-12 score: 46.6
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 180..275 e-value: 6.1E-10 score: 39.3
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 178..311 score: 20.234819
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 173..310 e-value: 5.1E-30 score: 106.2
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..168
None	No IPR available	PANTHER	PTHR34676:SF9	SUBFAMILY NOT NAMED	coord: 1..168
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 178..308

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0280961.1	Cmc10g0280961.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding