Cmc10g0278361 (gene) Melon (Charmono) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTAGGCAGGTATCAAAGTAATCCAGGAATGGATCATTGGAAAGCTGCAAAGAAAGTTTTAAGGTATCAGCAAGGAACAAAAGATTATATGCTTACTTACAAGAGATCTGATCATCTTGAGGTGATTGGATATTCAGATTCTGATTTTGTCGGATGTGTGGATACAAGAAAATCCACTTTTGGCTATTTGTTCCTGTTAGCTGAAGGAGCAATTTCATGGAAAAGTGCAAAGCAGTCTATTATCGCTGCATCCACTATGGAAGCTGAATTTGTAGCATGCTTTGAGGCTACAATTCATGGTTTATGGCTGCGGAACTTTATCTCAGGACTTGGAATTGTCGACAGTATTGCCAAGCCGTTAAAAACTTATTGTGATAATTCGACAGCAGTTTTCTTCTAA ATGCTAGGCAGGTATCAAAGTAATCCAGGAATGGATCATTGGAAAGCTGCAAAGAAAGTTTTAAGGTATCAGCAAGGAACAAAAGATTATATGCTTACTTACAAGAGATCTGATCATCTTGAGGTGATTGGATATTCAGATTCTGATTTTGTCGGATGTGTGGATACAAGAAAATCCACTTTTGGCTATTTGTTCCTGTTAGCTGAAGGAGCAATTTCATGGAAAAGTGCAAAGCAGTCTATTATCGCTGCATCCACTATGGAAGCTGAATTTGTAGCATGCTTTGAGGCTACAATTCATGGTTTATGGCTGCGGAACTTTATCTCAGGACTTGGAATTGTCGACAGTATTGCCAAGCCGTTAAAAACTTATTGTGATAATTCGACAGCAGTTTTCTTCTAA ATGCTAGGCAGGTATCAAAGTAATCCAGGAATGGATCATTGGAAAGCTGCAAAGAAAGTTTTAAGGTATCAGCAAGGAACAAAAGATTATATGCTTACTTACAAGAGATCTGATCATCTTGAGGTGATTGGATATTCAGATTCTGATTTTGTCGGATGTGTGGATACAAGAAAATCCACTTTTGGCTATTTGTTCCTGTTAGCTGAAGGAGCAATTTCATGGAAAAGTGCAAAGCAGTCTATTATCGCTGCATCCACTATGGAAGCTGAATTTGTAGCATGCTTTGAGGCTACAATTCATGGTTTATGGCTGCGGAACTTTATCTCAGGACTTGGAATTGTCGACAGTATTGCCAAGCCGTTAAAAACTTATTGTGATAATTCGACAGCAGTTTTCTTCTAA MLGRYQSNPGMDHWKAAKKVLRYQQGTKDYMLTYKRSDHLEVIGYSDSDFVGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATIHGLWLRNFISGLGIVDSIAKPLKTYCDNSTAVFF Homology
BLAST of Cmc10g0278361 vs. NCBI nr
Match: KAA0061857.1 (copia-like pol polyprotein [Cucumis melo var. makuwa] >TYK15399.1 copia-like pol polyprotein [Cucumis melo var. makuwa]) HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65 Identity = 124/133 (93.23%), Postives = 126/133 (94.74%), Query Frame = 0
BLAST of Cmc10g0278361 vs. NCBI nr
Match: KAA0051161.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 258.8 bits (660), Expect = 2.5e-65 Identity = 124/133 (93.23%), Postives = 127/133 (95.49%), Query Frame = 0
BLAST of Cmc10g0278361 vs. NCBI nr
Match: KAA0061426.1 (F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa]) HSP 1 Score: 258.1 bits (658), Expect = 4.3e-65 Identity = 122/133 (91.73%), Postives = 127/133 (95.49%), Query Frame = 0
BLAST of Cmc10g0278361 vs. NCBI nr
Match: KAA0031640.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 257.7 bits (657), Expect = 5.6e-65 Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 0
BLAST of Cmc10g0278361 vs. NCBI nr
Match: KAA0032876.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 256.9 bits (655), Expect = 9.5e-65 Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = 0
BLAST of Cmc10g0278361 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 3.2e-23 Identity = 54/131 (41.22%), Postives = 80/131 (61.07%), Query Frame = 0
BLAST of Cmc10g0278361 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 8.7e-21 Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 0
BLAST of Cmc10g0278361 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3) HSP 1 Score: 97.1 bits (240), Expect = 1.6e-19 Identity = 53/134 (39.55%), Postives = 79/134 (58.96%), Query Frame = 0
BLAST of Cmc10g0278361 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 1.5e-17 Identity = 48/131 (36.64%), Postives = 70/131 (53.44%), Query Frame = 0
BLAST of Cmc10g0278361 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 1.2e-14 Identity = 43/131 (32.82%), Postives = 70/131 (53.44%), Query Frame = 0
BLAST of Cmc10g0278361 vs. ExPASy TrEMBL
Match: A0A5A7V4M3 (Copia-like pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00420 PE=4 SV=1) HSP 1 Score: 259.6 bits (662), Expect = 7.1e-66 Identity = 124/133 (93.23%), Postives = 126/133 (94.74%), Query Frame = 0
BLAST of Cmc10g0278361 vs. ExPASy TrEMBL
Match: A0A5A7UCB2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G001140 PE=4 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 1.2e-65 Identity = 124/133 (93.23%), Postives = 127/133 (95.49%), Query Frame = 0
BLAST of Cmc10g0278361 vs. ExPASy TrEMBL
Match: A0A5A7V4M2 (F-box/FBD/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1041G00040 PE=4 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 2.1e-65 Identity = 122/133 (91.73%), Postives = 127/133 (95.49%), Query Frame = 0
BLAST of Cmc10g0278361 vs. ExPASy TrEMBL
Match: A0A5A7SLM2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004120 PE=4 SV=1) HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65 Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 0
BLAST of Cmc10g0278361 vs. ExPASy TrEMBL
Match: A0A5A7SS51 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00410 PE=4 SV=1) HSP 1 Score: 256.9 bits (655), Expect = 4.6e-65 Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = 0
BLAST of Cmc10g0278361 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 ) HSP 1 Score: 92.0 bits (227), Expect = 3.8e-19 Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 0
BLAST of Cmc10g0278361 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein ) HSP 1 Score: 43.5 bits (101), Expect = 1.5e-04 Identity = 22/66 (33.33%), Postives = 35/66 (53.03%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
Relationships
The following mRNA feature(s) are a part of this gene:
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