Cmc10g0278361 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0278361
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr10: 14503356 .. 14503757 (-)
RNA-Seq Expression	Cmc10g0278361
Synteny	Cmc10g0278361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGGCAGGTATCAAAGTAATCCAGGAATGGATCATTGGAAAGCTGCAAAGAAAGTTTTAAGGTATCAGCAAGGAACAAAAGATTATATGCTTACTTACAAGAGATCTGATCATCTTGAGGTGATTGGATATTCAGATTCTGATTTTGTCGGATGTGTGGATACAAGAAAATCCACTTTTGGCTATTTGTTCCTGTTAGCTGAAGGAGCAATTTCATGGAAAAGTGCAAAGCAGTCTATTATCGCTGCATCCACTATGGAAGCTGAATTTGTAGCATGCTTTGAGGCTACAATTCATGGTTTATGGCTGCGGAACTTTATCTCAGGACTTGGAATTGTCGACAGTATTGCCAAGCCGTTAAAAACTTATTGTGATAATTCGACAGCAGTTTTCTTCTAA

mRNA sequence

ATGCTAGGCAGGTATCAAAGTAATCCAGGAATGGATCATTGGAAAGCTGCAAAGAAAGTTTTAAGGTATCAGCAAGGAACAAAAGATTATATGCTTACTTACAAGAGATCTGATCATCTTGAGGTGATTGGATATTCAGATTCTGATTTTGTCGGATGTGTGGATACAAGAAAATCCACTTTTGGCTATTTGTTCCTGTTAGCTGAAGGAGCAATTTCATGGAAAAGTGCAAAGCAGTCTATTATCGCTGCATCCACTATGGAAGCTGAATTTGTAGCATGCTTTGAGGCTACAATTCATGGTTTATGGCTGCGGAACTTTATCTCAGGACTTGGAATTGTCGACAGTATTGCCAAGCCGTTAAAAACTTATTGTGATAATTCGACAGCAGTTTTCTTCTAA

Coding sequence (CDS)

ATGCTAGGCAGGTATCAAAGTAATCCAGGAATGGATCATTGGAAAGCTGCAAAGAAAGTTTTAAGGTATCAGCAAGGAACAAAAGATTATATGCTTACTTACAAGAGATCTGATCATCTTGAGGTGATTGGATATTCAGATTCTGATTTTGTCGGATGTGTGGATACAAGAAAATCCACTTTTGGCTATTTGTTCCTGTTAGCTGAAGGAGCAATTTCATGGAAAAGTGCAAAGCAGTCTATTATCGCTGCATCCACTATGGAAGCTGAATTTGTAGCATGCTTTGAGGCTACAATTCATGGTTTATGGCTGCGGAACTTTATCTCAGGACTTGGAATTGTCGACAGTATTGCCAAGCCGTTAAAAACTTATTGTGATAATTCGACAGCAGTTTTCTTCTAA

Protein sequence

MLGRYQSNPGMDHWKAAKKVLRYQQGTKDYMLTYKRSDHLEVIGYSDSDFVGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATIHGLWLRNFISGLGIVDSIAKPLKTYCDNSTAVFF

Homology

[Close]

BLAST of Cmc10g0278361 vs. NCBI nr
Match: KAA0061857.1 (copia-like pol polyprotein [Cucumis melo var. makuwa] >TYK15399.1 copia-like pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65
Identity = 124/133 (93.23%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MLGRYQSNPGMDHWKAAKKVLRYQQGTKDYMLTYKRSDHLEVIGYSDSDFVGCVDTRKST 60
           MLGRYQSNPGMDHWK AKKVLRY QGTKDYMLTYKRSDHLEVIGYSDSDF GCVDTRKST
Sbjct: 660 MLGRYQSNPGMDHWKTAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFFGCVDTRKST 719

Query: 61  FGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATIHGLWLRNFISGLGIVDSIAKP 120
           FGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEAT+HGLWLRNFISGLGIVD  AKP
Sbjct: 720 FGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISGLGIVDCNAKP 779

Query: 121 LKTYCDNSTAVFF 134
           L+ YCDNS AVFF
Sbjct: 780 LRIYCDNSAAVFF 792

[Close]

BLAST of Cmc10g0278361 vs. NCBI nr
Match: KAA0051161.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 258.8 bits (660), Expect = 2.5e-65
Identity = 124/133 (93.23%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MLGRYQSNPGMDHWKAAKKVLRYQQGTKDYMLTYKRSDHLEVIGYSDSDFVGCVDTRKST 60
           MLGRYQSN GMDHWKAAKKVLRY +GTKDYMLTYKRSDHLEVIGYSDSDF GCVDTRKST
Sbjct: 30  MLGRYQSNLGMDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTRKST 89

Query: 61  FGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATIHGLWLRNFISGLGIVDSIAKP 120
           FGYLFLLAEGAISWKSAKQSIIAAS MEAEFVACFEAT+HGLWLRNFISGLGIVDSIAKP
Sbjct: 90  FGYLFLLAEGAISWKSAKQSIIAASIMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKP 149

Query: 121 LKTYCDNSTAVFF 134
           L+ YCDNS AVFF
Sbjct: 150 LRIYCDNSAAVFF 162

[Close]

BLAST of Cmc10g0278361 vs. NCBI nr
Match: KAA0061426.1 (F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 258.1 bits (658), Expect = 4.3e-65
Identity = 122/133 (91.73%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MLGRYQSNPGMDHWKAAKKVLRYQQGTKDYMLTYKRSDHLEVIGYSDSDFVGCVDTRKST 60
           MLGRYQSNPGMDHWK AKKVLRY QGTKDYMLTYKRSDHLEVIGYSDSDF GCVDTRKST
Sbjct: 30  MLGRYQSNPGMDHWKVAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTRKST 89

Query: 61  FGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATIHGLWLRNFISGLGIVDSIAKP 120
           FGYLFLLAEGAISW+SAKQSII AS+MEAEFVACFEAT+HGLWLRNFISGLGIVDSIAK 
Sbjct: 90  FGYLFLLAEGAISWRSAKQSIIGASSMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKL 149

Query: 121 LKTYCDNSTAVFF 134
           L+ YCDNSTA+FF
Sbjct: 150 LRIYCDNSTAIFF 162

[Close]

BLAST of Cmc10g0278361 vs. NCBI nr
Match: KAA0031640.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 257.7 bits (657), Expect = 5.6e-65
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 2   LGRYQSNPGMDHWKAAKKVLRYQQGTKDYMLTYKRSDHLEVIGYSDSDFVGCVDTRKSTF 61
           L RYQSNPGMDHWKAAKKVLRY QGTKDYMLTYKRSDHLEVIGYSDSDF+GCVDTRKSTF
Sbjct: 502 LKRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFLGCVDTRKSTF 561

Query: 62  GYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATIHGLWLRNFISGLGIVDSIAKPL 121
           GYLFLLAEGAISWKSAKQSIIAASTME EFVACFEAT+HGLWLRNFISGLGI+DSI KPL
Sbjct: 562 GYLFLLAEGAISWKSAKQSIIAASTMEVEFVACFEATVHGLWLRNFISGLGIIDSIVKPL 621

Query: 122 KTYCDNSTAVFF 134
           + YCDNS AVFF
Sbjct: 622 RIYCDNSAAVFF 633

[Close]

BLAST of Cmc10g0278361 vs. NCBI nr
Match: KAA0032876.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 256.9 bits (655), Expect = 9.5e-65
Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 1   MLGRYQSNPGMDHWKAAKKVLRYQQGTKDYMLTYKRSDHLEVIGYSDSDFVGCVDTRKST 60
           MLGRYQSNPGMDHWK AKKVLRY QGTKDYMLTYKRSDHLEVIGYSDSDF GCVDTRKST
Sbjct: 101 MLGRYQSNPGMDHWKVAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFTGCVDTRKST 160

Query: 61  FGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATIHGLWLRNFISGLGIVDSIAKP 120
           FGYLFLLAEGAISWKS KQSIIAASTME EFVACFEAT+HGLWL NFISGLGIVDSIAKP
Sbjct: 161 FGYLFLLAEGAISWKSVKQSIIAASTMEVEFVACFEATVHGLWLWNFISGLGIVDSIAKP 220

Query: 121 LKTYCDNSTAVFF 134
           L+ YCDNS  VFF
Sbjct: 221 LRIYCDNSVTVFF 233

[Close]

BLAST of Cmc10g0278361 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.2e-23
Identity = 54/131 (41.22%), Postives = 80/131 (61.07%), Query Frame = 0


Query: 1    MLGRYQSNPGMDHWKAAKKVLRYQQGTKDYMLTYKRSDHLEVIGYSDSDFVGCVDTRKST 60
            ++ R+  NPG +HW+A K +LRY +GT    L +  SD + + GY+D+D  G +D RKS+
Sbjct: 1135 VVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI-LKGYTDADMAGDIDNRKSS 1194

Query: 61   FGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATIHGLWLRNFISGLGIVDSIAKP 120
             GYLF  + GAISW+S  Q  +A ST EAE++A  E     +WL+ F+  LG+     K 
Sbjct: 1195 TGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQ---KE 1254

Query: 121  LKTYCDNSTAV 132
               YCD+ +A+
Sbjct: 1255 YVVYCDSQSAI 1261

[Close]

BLAST of Cmc10g0278361 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.7e-21
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 0


Query: 1   MLGRYQSNPGMDHWKAAKKVLRYQQGTKDYMLTYKRSDHLEVIGYSDSDFVGCVDTRKST 60
           +L ++ S+P   HW+A K+VLRY Q T+ Y L + R+   +++GYSD+D+ G V++R+ST
Sbjct: 30  VLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVGYSDADWAGDVESRRST 89

Query: 61  FGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATIHGLWL 105
            GYLF L  G +SW+S KQ  +A S+ E E++A  EAT   +WL
Sbjct: 90  SGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

[Close]

BLAST of Cmc10g0278361 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-19
Identity = 53/134 (39.55%), Postives = 79/134 (58.96%), Query Frame = 0


Query: 1    MLGRYQSNPGMDHWKAAKKVLRYQQGTKDYMLTYKRSDHLE--VIGYSDSDFVGCVDTRK 60
            +L RY S    + W+  K+VLRY +GT D  L +K++   E  +IGY DSD+ G    RK
Sbjct: 1205 ILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRK 1264

Query: 61   STFGYLFLLAE-GAISWKSAKQSIIAASTMEAEFVACFEATIHGLWLRNFISGLGIVDSI 120
            ST GYLF + +   I W + +Q+ +AAS+ EAE++A FEA    LWL+  ++ + I   +
Sbjct: 1265 STTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINI--KL 1324

Query: 121  AKPLKTYCDNSTAV 132
              P+K Y DN   +
Sbjct: 1325 ENPIKIYEDNQGCI 1336

[Close]

BLAST of Cmc10g0278361 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-17
Identity = 48/131 (36.64%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 2    LGRYQSNPGMDHWKAAKKVLRYQQGTKDYMLTYKRSDHLEVIGYSDSDFVGCVDTRKSTF 61
            L +Y   P  DHW A K+VLRY  GT D+ +  K+ + L +  YSD+D+ G  D   ST 
Sbjct: 1252 LSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTN 1311

Query: 62   GYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATIHGLWLRNFISGLGIVDSIAKPL 121
            GY+  L    ISW S KQ  +  S+ EAE+ +    +    W+ + ++ LGI   ++ P 
Sbjct: 1312 GYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGI--QLSHPP 1371

Query: 122  KTYCDNSTAVF 133
              YCDN  A +
Sbjct: 1372 VIYCDNVGATY 1380

[Close]

BLAST of Cmc10g0278361 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-14
Identity = 43/131 (32.82%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 2    LGRYQSNPGMDHWKAAKKVLRYQQGTKDYMLTYKRSDHLEVIGYSDSDFVGCVDTRKSTF 61
            L ++   P  +H +A K++LRY  GT ++ +  K+ + L +  YSD+D+ G  D   ST 
Sbjct: 1269 LSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTN 1328

Query: 62   GYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATIHGLWLRNFISGLGIVDSIAKPL 121
            GY+  L    ISW S KQ  +  S+ EAE+ +    +    W+ + ++ LGI   + +P 
Sbjct: 1329 GYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGI--RLTRPP 1388

Query: 122  KTYCDNSTAVF 133
              YCDN  A +
Sbjct: 1389 VIYCDNVGATY 1397

[Close]

BLAST of Cmc10g0278361 vs. ExPASy TrEMBL
Match: A0A5A7V4M3 (Copia-like pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00420 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.1e-66
Identity = 124/133 (93.23%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MLGRYQSNPGMDHWKAAKKVLRYQQGTKDYMLTYKRSDHLEVIGYSDSDFVGCVDTRKST 60
           MLGRYQSNPGMDHWK AKKVLRY QGTKDYMLTYKRSDHLEVIGYSDSDF GCVDTRKST
Sbjct: 660 MLGRYQSNPGMDHWKTAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFFGCVDTRKST 719

Query: 61  FGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATIHGLWLRNFISGLGIVDSIAKP 120
           FGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEAT+HGLWLRNFISGLGIVD  AKP
Sbjct: 720 FGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISGLGIVDCNAKP 779

Query: 121 LKTYCDNSTAVFF 134
           L+ YCDNS AVFF
Sbjct: 780 LRIYCDNSAAVFF 792

[Close]

BLAST of Cmc10g0278361 vs. ExPASy TrEMBL
Match: A0A5A7UCB2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G001140 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.2e-65
Identity = 124/133 (93.23%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MLGRYQSNPGMDHWKAAKKVLRYQQGTKDYMLTYKRSDHLEVIGYSDSDFVGCVDTRKST 60
           MLGRYQSN GMDHWKAAKKVLRY +GTKDYMLTYKRSDHLEVIGYSDSDF GCVDTRKST
Sbjct: 30  MLGRYQSNLGMDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTRKST 89

Query: 61  FGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATIHGLWLRNFISGLGIVDSIAKP 120
           FGYLFLLAEGAISWKSAKQSIIAAS MEAEFVACFEAT+HGLWLRNFISGLGIVDSIAKP
Sbjct: 90  FGYLFLLAEGAISWKSAKQSIIAASIMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKP 149

Query: 121 LKTYCDNSTAVFF 134
           L+ YCDNS AVFF
Sbjct: 150 LRIYCDNSAAVFF 162

[Close]

BLAST of Cmc10g0278361 vs. ExPASy TrEMBL
Match: A0A5A7V4M2 (F-box/FBD/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1041G00040 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.1e-65
Identity = 122/133 (91.73%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MLGRYQSNPGMDHWKAAKKVLRYQQGTKDYMLTYKRSDHLEVIGYSDSDFVGCVDTRKST 60
           MLGRYQSNPGMDHWK AKKVLRY QGTKDYMLTYKRSDHLEVIGYSDSDF GCVDTRKST
Sbjct: 30  MLGRYQSNPGMDHWKVAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTRKST 89

Query: 61  FGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATIHGLWLRNFISGLGIVDSIAKP 120
           FGYLFLLAEGAISW+SAKQSII AS+MEAEFVACFEAT+HGLWLRNFISGLGIVDSIAK 
Sbjct: 90  FGYLFLLAEGAISWRSAKQSIIGASSMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKL 149

Query: 121 LKTYCDNSTAVFF 134
           L+ YCDNSTA+FF
Sbjct: 150 LRIYCDNSTAIFF 162

[Close]

BLAST of Cmc10g0278361 vs. ExPASy TrEMBL
Match: A0A5A7SLM2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004120 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 2   LGRYQSNPGMDHWKAAKKVLRYQQGTKDYMLTYKRSDHLEVIGYSDSDFVGCVDTRKSTF 61
           L RYQSNPGMDHWKAAKKVLRY QGTKDYMLTYKRSDHLEVIGYSDSDF+GCVDTRKSTF
Sbjct: 502 LKRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFLGCVDTRKSTF 561

Query: 62  GYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATIHGLWLRNFISGLGIVDSIAKPL 121
           GYLFLLAEGAISWKSAKQSIIAASTME EFVACFEAT+HGLWLRNFISGLGI+DSI KPL
Sbjct: 562 GYLFLLAEGAISWKSAKQSIIAASTMEVEFVACFEATVHGLWLRNFISGLGIIDSIVKPL 621

Query: 122 KTYCDNSTAVFF 134
           + YCDNS AVFF
Sbjct: 622 RIYCDNSAAVFF 633

[Close]

BLAST of Cmc10g0278361 vs. ExPASy TrEMBL
Match: A0A5A7SS51 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00410 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.6e-65
Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 1   MLGRYQSNPGMDHWKAAKKVLRYQQGTKDYMLTYKRSDHLEVIGYSDSDFVGCVDTRKST 60
           MLGRYQSNPGMDHWK AKKVLRY QGTKDYMLTYKRSDHLEVIGYSDSDF GCVDTRKST
Sbjct: 101 MLGRYQSNPGMDHWKVAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFTGCVDTRKST 160

Query: 61  FGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATIHGLWLRNFISGLGIVDSIAKP 120
           FGYLFLLAEGAISWKS KQSIIAASTME EFVACFEAT+HGLWL NFISGLGIVDSIAKP
Sbjct: 161 FGYLFLLAEGAISWKSVKQSIIAASTMEVEFVACFEATVHGLWLWNFISGLGIVDSIAKP 220

Query: 121 LKTYCDNSTAVFF 134
           L+ YCDNS  VFF
Sbjct: 221 LRIYCDNSVTVFF 233

[Close]

BLAST of Cmc10g0278361 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-19
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 0


Query: 2   LGRYQSNPGMDHWKAAKKVLRYQQGTKDYMLTYKRSDHLEVIGYSDSDFVGCVDTRKSTF 61
           L ++   P + H +A  K+L Y +GT    L Y     +++  +SD+ F  C DTR+ST 
Sbjct: 402 LSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTN 461

Query: 62  GYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATIHGLWLRNFISGLGIVDSIAKPL 121
           GY   L    ISWKS KQ +++ S+ EAE+ A   AT   +WL  F   L +   ++KP 
Sbjct: 462 GYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQL--PLSKPT 521

Query: 122 KTYCDNSTAV 132
             +CDN+ A+
Sbjct: 522 LLFCDNTAAI 529

[Close]

BLAST of Cmc10g0278361 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.5e-04
Identity = 22/66 (33.33%), Postives = 35/66 (53.03%), Query Frame = 0


Query: 2  LGRYQSNPGMDHWKAAKKVLRYQQGTKDYMLTYKRSDHLEVIGYSDSDFVGCVDTRKSTF 61
          L ++ S       +A  KVL Y +GT    L Y  +  L++  ++DSD+  C DTR+S  
Sbjct: 17 LSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVT 76

Query: 62 GYLFLL 68
          G+  L+
Sbjct: 77 GFCSLV 82

The following BLAST results are available for this feature:

BLAST of Cmc10g0278361 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061857.1	1.5e-65	93.23	copia-like pol polyprotein [Cucumis melo var. makuwa] >TYK15399.1 copia-like pol...	[more]
KAA0051161.1	2.5e-65	93.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0061426.1	4.3e-65	91.73	F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa]	[more]
KAA0031640.1	5.6e-65	92.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0032876.1	9.5e-65	91.73	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc10g0278361 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.2e-23	41.22	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	8.7e-21	45.19	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	1.6e-19	39.55	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.5e-17	36.64	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.2e-14	32.82	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc10g0278361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V4M3	7.1e-66	93.23	Copia-like pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7UCB2	1.2e-65	93.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V4M2	2.1e-65	91.73	F-box/FBD/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7SLM2	2.7e-65	92.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SS51	4.6e-65	91.73	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc10g0278361 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.8e-19	36.15	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	1.5e-04	33.33	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 5..68
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 5..68
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 43..131 e-value: 6.14146E-37 score: 121.036

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0278361.1	Cmc10g0278361.1	mRNA