Cmc10g0276341 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0276341
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr10: 11257847 .. 11258467 (-)
RNA-Seq ExpressionCmc10g0276341
SyntenyCmc10g0276341
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCCTTTGCATTGACTACAAAGAGCTGAACAAGGTGACAGTTAAGAATTGCTATCCCTTGCCCAGGATTGATGATTTGTTCGATCAGTTGCAAGGAGCCACCGTCTTTTCTAAGATCGACCTGCGATCAGGCTACCACCAATTGAGGATCAAGGATAGTGATATTCCTAAGACCACTTTTTGTTCAAGATACGAACATTACGAGTTCATTGTGATGTCTTTTGGGTTGACTAATGCTCCTGCGGTATTTATGGACTTGATGAACAGGGTGTTTAAGGCTTTCTTAGACACGTTTGTCATAGTTTTCATTGATGACATTTTGATTCACTCCAAAACTGAGGCTGAGCATGAGGAGCACTTGCACCAGGTTTTGGAGACTCTTCGAGCTAATAAGTTGTACGCCAAGTTCTTCAAGTGTGAGTTCTGGCTAAAGAAGGTGACTTTTCTCGGCCACGTGGTTTCCAGTGAGGGAGTTTCTGTAGACCCAGCAAAGATTAAAGCTGTTACTAGTTGGCCTCGACCGTCTACAGTTAGTGAGATCCGTAGCTTTCTAGGCCTAGCAGGTTATTATAGGAGGTTCGTGGAAGACTTTTCTCTTATAGCTAGTCCCTTGACTTAG

mRNA sequence

ATGTGCCTTTGCATTGACTACAAAGAGCTGAACAAGGTGACAGTTAAGAATTGCTATCCCTTGCCCAGGATTGATGATTTGTTCGATCAGTTGCAAGGAGCCACCGTCTTTTCTAAGATCGACCTGCGATCAGGCTACCACCAATTGAGGATCAAGGATAGTGATATTCCTAAGACCACTTTTTGTTCAAGATACGAACATTACGAGTTCATTGTGATGTCTTTTGGGTTGACTAATGCTCCTGCGGTATTTATGGACTTGATGAACAGGGTGTTTAAGGCTTTCTTAGACACGTTTGTCATAGTTTTCATTGATGACATTTTGATTCACTCCAAAACTGAGGCTGAGCATGAGGAGCACTTGCACCAGGTTTTGGAGACTCTTCGAGCTAATAAGTTGTACGCCAAGTTCTTCAAGTGTGAGTTCTGGCTAAAGAAGGTGACTTTTCTCGGCCACGTGGTTTCCAGTGAGGGAGTTTCTGTAGACCCAGCAAAGATTAAAGCTGTTACTAGTTGGCCTCGACCGTCTACAGTTAGTGAGATCCGTAGCTTTCTAGGCCTAGCAGGTTATTATAGGAGGTTCGTGGAAGACTTTTCTCTTATAGCTAGTCCCTTGACTTAG

Coding sequence (CDS)

ATGTGCCTTTGCATTGACTACAAAGAGCTGAACAAGGTGACAGTTAAGAATTGCTATCCCTTGCCCAGGATTGATGATTTGTTCGATCAGTTGCAAGGAGCCACCGTCTTTTCTAAGATCGACCTGCGATCAGGCTACCACCAATTGAGGATCAAGGATAGTGATATTCCTAAGACCACTTTTTGTTCAAGATACGAACATTACGAGTTCATTGTGATGTCTTTTGGGTTGACTAATGCTCCTGCGGTATTTATGGACTTGATGAACAGGGTGTTTAAGGCTTTCTTAGACACGTTTGTCATAGTTTTCATTGATGACATTTTGATTCACTCCAAAACTGAGGCTGAGCATGAGGAGCACTTGCACCAGGTTTTGGAGACTCTTCGAGCTAATAAGTTGTACGCCAAGTTCTTCAAGTGTGAGTTCTGGCTAAAGAAGGTGACTTTTCTCGGCCACGTGGTTTCCAGTGAGGGAGTTTCTGTAGACCCAGCAAAGATTAAAGCTGTTACTAGTTGGCCTCGACCGTCTACAGTTAGTGAGATCCGTAGCTTTCTAGGCCTAGCAGGTTATTATAGGAGGTTCGTGGAAGACTTTTCTCTTATAGCTAGTCCCTTGACTTAG

Protein sequence

MCLCIDYKELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDIPKTTFCSRYEHYEFIVMSFGLTNAPAVFMDLMNRVFKAFLDTFVIVFIDDILIHSKTEAEHEEHLHQVLETLRANKLYAKFFKCEFWLKKVTFLGHVVSSEGVSVDPAKIKAVTSWPRPSTVSEIRSFLGLAGYYRRFVEDFSLIASPLT
Homology
BLAST of Cmc10g0276341 vs. NCBI nr
Match: KAA0054634.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 389.8 bits (1000), Expect = 1.5e-104
Identity = 191/206 (92.72%), Postives = 199/206 (96.60%), Query Frame = 0

Query: 1   MCLCIDYKELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDIPKTT 60
           MCLCIDY+ELNKVTVKN YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRI+D DIPKTT
Sbjct: 610 MCLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTT 669

Query: 61  FCSRYEHYEFIVMSFGLTNAPAVFMDLMNRVFKAFLDTFVIVFIDDILIHSKTEAEHEEH 120
           F SRY HYEF+VMSFGLTNAPAVFMDLMNRVFK FLD+FVIVFIDDILI+SKTEAEHEEH
Sbjct: 670 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 729

Query: 121 LHQVLETLRANKLYAKFFKCEFWLKKVTFLGHVVSSEGVSVDPAKIKAVTSWPRPSTVSE 180
           LHQVLETLRANKLYAKF KCEFWL+KVTFLGHVVSSEGVSVDPAKI+AVT+WPRPSTVSE
Sbjct: 730 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 789

Query: 181 IRSFLGLAGYYRRFVEDFSLIASPLT 207
           IRSFLGLAGYYRRFVEDFS IASPLT
Sbjct: 790 IRSFLGLAGYYRRFVEDFSRIASPLT 815

BLAST of Cmc10g0276341 vs. NCBI nr
Match: KAA0033486.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 387.5 bits (994), Expect = 7.2e-104
Identity = 190/206 (92.23%), Postives = 198/206 (96.12%), Query Frame = 0

Query: 1   MCLCIDYKELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDIPKTT 60
           M LCIDY+ELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRI+DSDIPKT 
Sbjct: 641 MRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 700

Query: 61  FCSRYEHYEFIVMSFGLTNAPAVFMDLMNRVFKAFLDTFVIVFIDDILIHSKTEAEHEEH 120
           F SRY HYEF+VMSFGLTNAPAVFMDLMNRVFK FLD+FVIVFIDDILI+SKTEAEHEEH
Sbjct: 701 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 760

Query: 121 LHQVLETLRANKLYAKFFKCEFWLKKVTFLGHVVSSEGVSVDPAKIKAVTSWPRPSTVSE 180
           LHQVLETLRANKLYAKF KCEFWL+KVTFLGHVVS EGVSVDPAKI+AVT+WPRPSTVSE
Sbjct: 761 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSREGVSVDPAKIEAVTNWPRPSTVSE 820

Query: 181 IRSFLGLAGYYRRFVEDFSLIASPLT 207
           IRSFLGLAGYYRRFVEDFS IASPLT
Sbjct: 821 IRSFLGLAGYYRRFVEDFSRIASPLT 846

BLAST of Cmc10g0276341 vs. NCBI nr
Match: KAA0051719.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 386.0 bits (990), Expect = 2.1e-103
Identity = 190/206 (92.23%), Postives = 197/206 (95.63%), Query Frame = 0

Query: 1   MCLCIDYKELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDIPKTT 60
           M LCIDY+ELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLR +DSDIPKT 
Sbjct: 601 MRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRFRDSDIPKTA 660

Query: 61  FCSRYEHYEFIVMSFGLTNAPAVFMDLMNRVFKAFLDTFVIVFIDDILIHSKTEAEHEEH 120
           F  RY HYEFIVMSFGLTNAPAVFMDLMNRVFK FLD+FVIVFIDDILI+SKTEAEHEEH
Sbjct: 661 FRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 720

Query: 121 LHQVLETLRANKLYAKFFKCEFWLKKVTFLGHVVSSEGVSVDPAKIKAVTSWPRPSTVSE 180
           LHQVLETLRANKLYAKF KCEFWL+KVTFLGHVVSSEGVSVDPAKI+AVT+WPRPSTVSE
Sbjct: 721 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 780

Query: 181 IRSFLGLAGYYRRFVEDFSLIASPLT 207
           IRSFLGLAGYYRRFVEDFS IASPLT
Sbjct: 781 IRSFLGLAGYYRRFVEDFSRIASPLT 806

BLAST of Cmc10g0276341 vs. NCBI nr
Match: KAA0057168.1 (pol protein [Cucumis melo var. makuwa] >TYK27151.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 384.8 bits (987), Expect = 4.7e-103
Identity = 190/206 (92.23%), Postives = 198/206 (96.12%), Query Frame = 0

Query: 1   MCLCIDYKELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDIPKTT 60
           M LCIDY+ELNKVTVKN YPLPRIDDLFDQLQGA VFSKIDLRSGYHQLRI+DSDIPKTT
Sbjct: 389 MHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAIVFSKIDLRSGYHQLRIRDSDIPKTT 448

Query: 61  FCSRYEHYEFIVMSFGLTNAPAVFMDLMNRVFKAFLDTFVIVFIDDILIHSKTEAEHEEH 120
           FCSRY HYEFIVMSFGLTNAPAVFMDLMNRVFK FLD+FVIVFIDDILI+SKTEAEHEEH
Sbjct: 449 FCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 508

Query: 121 LHQVLETLRANKLYAKFFKCEFWLKKVTFLGHVVSSEGVSVDPAKIKAVTSWPRPSTVSE 180
           L QVLETLRAN+LYAKF KCEFWLKKV+FLGHVVSSEGVSVDPAKI+AVT+WPRPSTVSE
Sbjct: 509 LRQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 568

Query: 181 IRSFLGLAGYYRRFVEDFSLIASPLT 207
           IRSFLGLAGYYRRFVEDFS IASPLT
Sbjct: 569 IRSFLGLAGYYRRFVEDFSRIASPLT 594

BLAST of Cmc10g0276341 vs. NCBI nr
Match: KAA0036538.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 383.6 bits (984), Expect = 1.0e-102
Identity = 188/206 (91.26%), Postives = 197/206 (95.63%), Query Frame = 0

Query: 1   MCLCIDYKELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDIPKTT 60
           M LCIDY+ELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRI+D DIPKTT
Sbjct: 398 MHLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTT 457

Query: 61  FCSRYEHYEFIVMSFGLTNAPAVFMDLMNRVFKAFLDTFVIVFIDDILIHSKTEAEHEEH 120
           F SRY HYEF+VMSFGLTNAP VFMDLMNRVFK FLD+FVIVFIDDILI+SKTEAEHE+H
Sbjct: 458 FRSRYGHYEFVVMSFGLTNAPTVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEKH 517

Query: 121 LHQVLETLRANKLYAKFFKCEFWLKKVTFLGHVVSSEGVSVDPAKIKAVTSWPRPSTVSE 180
           LHQVLETLRANKLYAKF KCEFWL+KVTFLGHVVSSE VSVDPAKI+AVT+WPRPSTVSE
Sbjct: 518 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSERVSVDPAKIEAVTNWPRPSTVSE 577

Query: 181 IRSFLGLAGYYRRFVEDFSLIASPLT 207
           IRSFLGLAGYYRRFVEDFS IASPLT
Sbjct: 578 IRSFLGLAGYYRRFVEDFSRIASPLT 603

BLAST of Cmc10g0276341 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 6.0e-45
Identity = 82/202 (40.59%), Postives = 129/202 (63.86%), Query Frame = 0

Query: 5   IDYKELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDIPKTTFCSR 64
           IDY++LN++T+ + YP+P +D++  +L     F+ IDL  G+HQ+ + +  I KT F ++
Sbjct: 265 IDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTK 324

Query: 65  YEHYEFIVMSFGLTNAPAVFMDLMNRVFKAFLDTFVIVFIDDILIHSKTEAEHEEHLHQV 124
             HYE++ M FGL NAPA F   MN + +  L+   +V++DDI+I S +  EH   +  V
Sbjct: 325 SGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLV 384

Query: 125 LETLRANKLYAKFFKCEFWLKKVTFLGHVVSSEGVSVDPAKIKAVTSWPRPSTVSEIRSF 184
              L    L  +  KCEF  K+  FLGH+V+ +G+  +P K+KA+ S+P P+   EIR+F
Sbjct: 385 FTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAF 444

Query: 185 LGLAGYYRRFVEDFSLIASPLT 207
           LGL GYYR+F+ +++ IA P+T
Sbjct: 445 LGLTGYYRKFIPNYADIAKPMT 466

BLAST of Cmc10g0276341 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 5.1e-44
Identity = 81/204 (39.71%), Postives = 132/204 (64.71%), Query Frame = 0

Query: 3   LCIDYKELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDIPKTTFC 62
           + IDY++LN++TV + +P+P +D++  +L     F+ IDL  G+HQ+ +    + KT F 
Sbjct: 264 IVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFS 323

Query: 63  SRYEHYEFIVMSFGLTNAPAVFMDLMNRVFKAFLDTFVIVFIDDILIHSKTEAEHEEHLH 122
           +++ HYE++ M FGL NAPA F   MN + +  L+   +V++DDI++ S +  EH + L 
Sbjct: 324 TKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLG 383

Query: 123 QVLETLRANKLYAKFFKCEFWLKKVTFLGHVVSSEGVSVDPAKIKAVTSWPRPSTVSEIR 182
            V E L    L  +  KCEF  ++ TFLGHV++ +G+  +P KI+A+  +P P+   EI+
Sbjct: 384 LVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIK 443

Query: 183 SFLGLAGYYRRFVEDFSLIASPLT 207
           +FLGL GYYR+F+ +F+ IA P+T
Sbjct: 444 AFLGLTGYYRKFIPNFADIAKPMT 467

BLAST of Cmc10g0276341 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.1e-42
Identity = 78/204 (38.24%), Postives = 130/204 (63.73%), Query Frame = 0

Query: 3   LCIDYKELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDIPKTTFC 62
           + +D+K LN VT+ + YP+P I+     L  A  F+ +DL SG+HQ+ +K+SDIPKT F 
Sbjct: 180 MVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFS 239

Query: 63  SRYEHYEFIVMSFGLTNAPAVFMDLMNRVFKAFLDTFVIVFIDDILIHSKTEAEHEEHLH 122
           +    YEF+ + FGL NAPA+F  +++ + +  +     V+IDDI++ S+    H ++L 
Sbjct: 240 TLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLR 299

Query: 123 QVLETLRANKLYAKFFKCEFWLKKVTFLGHVVSSEGVSVDPAKIKAVTSWPRPSTVSEIR 182
            VL +L    L     K  F   +V FLG++V+++G+  DP K++A++  P P++V E++
Sbjct: 300 LVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELK 359

Query: 183 SFLGLAGYYRRFVEDFSLIASPLT 207
            FLG+  YYR+F++D++ +A PLT
Sbjct: 360 RFLGMTSYYRKFIQDYAKVAKPLT 383

BLAST of Cmc10g0276341 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 166.8 bits (421), Expect = 2.6e-40
Identity = 84/203 (41.38%), Postives = 124/203 (61.08%), Query Frame = 0

Query: 3   LCIDYKELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDIPKTTFC 62
           LC+DY+ LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ ++  D  KT F 
Sbjct: 648 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 707

Query: 63  SRYEHYEFIVMSFGLTNAPAVFMDLMNRVFKAFLDTFVIVFIDDILIHSKTEAEHEEHLH 122
           +    YE+ VM FGL NAP+ F   M   F+     FV V++DDILI S++  EH +HL 
Sbjct: 708 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLD 767

Query: 123 QVLETLRANKLYAKFFKCEFWLKKVTFLGHVVSSEGVSVDPAKIKAVTSWPRPSTVSEIR 182
            VLE L+   L  K  KC+F  ++  FLG+ +  + ++    K  A+  +P P TV + +
Sbjct: 768 TVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQ 827

Query: 183 SFLGLAGYYRRFVEDFSLIASPL 206
            FLG+  YYRRF+ + S IA P+
Sbjct: 828 RFLGMINYYRRFIPNCSKIAQPI 848

BLAST of Cmc10g0276341 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 166.8 bits (421), Expect = 2.6e-40
Identity = 84/203 (41.38%), Postives = 124/203 (61.08%), Query Frame = 0

Query: 3   LCIDYKELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDIPKTTFC 62
           LC+DY+ LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ ++  D  KT F 
Sbjct: 674 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 733

Query: 63  SRYEHYEFIVMSFGLTNAPAVFMDLMNRVFKAFLDTFVIVFIDDILIHSKTEAEHEEHLH 122
           +    YE+ VM FGL NAP+ F   M   F+     FV V++DDILI S++  EH +HL 
Sbjct: 734 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLD 793

Query: 123 QVLETLRANKLYAKFFKCEFWLKKVTFLGHVVSSEGVSVDPAKIKAVTSWPRPSTVSEIR 182
            VLE L+   L  K  KC+F  ++  FLG+ +  + ++    K  A+  +P P TV + +
Sbjct: 794 TVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQ 853

Query: 183 SFLGLAGYYRRFVEDFSLIASPL 206
            FLG+  YYRRF+ + S IA P+
Sbjct: 854 RFLGMINYYRRFIPNCSKIAQPI 874

BLAST of Cmc10g0276341 vs. ExPASy TrEMBL
Match: A0A5A7UHL7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004390 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 7.0e-105
Identity = 191/206 (92.72%), Postives = 199/206 (96.60%), Query Frame = 0

Query: 1   MCLCIDYKELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDIPKTT 60
           MCLCIDY+ELNKVTVKN YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRI+D DIPKTT
Sbjct: 610 MCLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTT 669

Query: 61  FCSRYEHYEFIVMSFGLTNAPAVFMDLMNRVFKAFLDTFVIVFIDDILIHSKTEAEHEEH 120
           F SRY HYEF+VMSFGLTNAPAVFMDLMNRVFK FLD+FVIVFIDDILI+SKTEAEHEEH
Sbjct: 670 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 729

Query: 121 LHQVLETLRANKLYAKFFKCEFWLKKVTFLGHVVSSEGVSVDPAKIKAVTSWPRPSTVSE 180
           LHQVLETLRANKLYAKF KCEFWL+KVTFLGHVVSSEGVSVDPAKI+AVT+WPRPSTVSE
Sbjct: 730 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 789

Query: 181 IRSFLGLAGYYRRFVEDFSLIASPLT 207
           IRSFLGLAGYYRRFVEDFS IASPLT
Sbjct: 790 IRSFLGLAGYYRRFVEDFSRIASPLT 815

BLAST of Cmc10g0276341 vs. ExPASy TrEMBL
Match: A0A5A7SU25 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00200 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.5e-104
Identity = 190/206 (92.23%), Postives = 198/206 (96.12%), Query Frame = 0

Query: 1   MCLCIDYKELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDIPKTT 60
           M LCIDY+ELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRI+DSDIPKT 
Sbjct: 641 MRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 700

Query: 61  FCSRYEHYEFIVMSFGLTNAPAVFMDLMNRVFKAFLDTFVIVFIDDILIHSKTEAEHEEH 120
           F SRY HYEF+VMSFGLTNAPAVFMDLMNRVFK FLD+FVIVFIDDILI+SKTEAEHEEH
Sbjct: 701 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 760

Query: 121 LHQVLETLRANKLYAKFFKCEFWLKKVTFLGHVVSSEGVSVDPAKIKAVTSWPRPSTVSE 180
           LHQVLETLRANKLYAKF KCEFWL+KVTFLGHVVS EGVSVDPAKI+AVT+WPRPSTVSE
Sbjct: 761 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSREGVSVDPAKIEAVTNWPRPSTVSE 820

Query: 181 IRSFLGLAGYYRRFVEDFSLIASPLT 207
           IRSFLGLAGYYRRFVEDFS IASPLT
Sbjct: 821 IRSFLGLAGYYRRFVEDFSRIASPLT 846

BLAST of Cmc10g0276341 vs. ExPASy TrEMBL
Match: A0A5A7UE01 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001050 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 1.0e-103
Identity = 190/206 (92.23%), Postives = 197/206 (95.63%), Query Frame = 0

Query: 1   MCLCIDYKELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDIPKTT 60
           M LCIDY+ELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLR +DSDIPKT 
Sbjct: 601 MRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRFRDSDIPKTA 660

Query: 61  FCSRYEHYEFIVMSFGLTNAPAVFMDLMNRVFKAFLDTFVIVFIDDILIHSKTEAEHEEH 120
           F  RY HYEFIVMSFGLTNAPAVFMDLMNRVFK FLD+FVIVFIDDILI+SKTEAEHEEH
Sbjct: 661 FRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 720

Query: 121 LHQVLETLRANKLYAKFFKCEFWLKKVTFLGHVVSSEGVSVDPAKIKAVTSWPRPSTVSE 180
           LHQVLETLRANKLYAKF KCEFWL+KVTFLGHVVSSEGVSVDPAKI+AVT+WPRPSTVSE
Sbjct: 721 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 780

Query: 181 IRSFLGLAGYYRRFVEDFSLIASPLT 207
           IRSFLGLAGYYRRFVEDFS IASPLT
Sbjct: 781 IRSFLGLAGYYRRFVEDFSRIASPLT 806

BLAST of Cmc10g0276341 vs. ExPASy TrEMBL
Match: A0A5A7UPX4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1920G00300 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.3e-103
Identity = 190/206 (92.23%), Postives = 198/206 (96.12%), Query Frame = 0

Query: 1   MCLCIDYKELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDIPKTT 60
           M LCIDY+ELNKVTVKN YPLPRIDDLFDQLQGA VFSKIDLRSGYHQLRI+DSDIPKTT
Sbjct: 389 MHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAIVFSKIDLRSGYHQLRIRDSDIPKTT 448

Query: 61  FCSRYEHYEFIVMSFGLTNAPAVFMDLMNRVFKAFLDTFVIVFIDDILIHSKTEAEHEEH 120
           FCSRY HYEFIVMSFGLTNAPAVFMDLMNRVFK FLD+FVIVFIDDILI+SKTEAEHEEH
Sbjct: 449 FCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 508

Query: 121 LHQVLETLRANKLYAKFFKCEFWLKKVTFLGHVVSSEGVSVDPAKIKAVTSWPRPSTVSE 180
           L QVLETLRAN+LYAKF KCEFWLKKV+FLGHVVSSEGVSVDPAKI+AVT+WPRPSTVSE
Sbjct: 509 LRQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 568

Query: 181 IRSFLGLAGYYRRFVEDFSLIASPLT 207
           IRSFLGLAGYYRRFVEDFS IASPLT
Sbjct: 569 IRSFLGLAGYYRRFVEDFSRIASPLT 594

BLAST of Cmc10g0276341 vs. ExPASy TrEMBL
Match: A0A5A7T165 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00390 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 5.0e-103
Identity = 188/206 (91.26%), Postives = 197/206 (95.63%), Query Frame = 0

Query: 1   MCLCIDYKELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDIPKTT 60
           M LCIDY+ELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRI+D DIPKTT
Sbjct: 398 MHLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTT 457

Query: 61  FCSRYEHYEFIVMSFGLTNAPAVFMDLMNRVFKAFLDTFVIVFIDDILIHSKTEAEHEEH 120
           F SRY HYEF+VMSFGLTNAP VFMDLMNRVFK FLD+FVIVFIDDILI+SKTEAEHE+H
Sbjct: 458 FRSRYGHYEFVVMSFGLTNAPTVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEKH 517

Query: 121 LHQVLETLRANKLYAKFFKCEFWLKKVTFLGHVVSSEGVSVDPAKIKAVTSWPRPSTVSE 180
           LHQVLETLRANKLYAKF KCEFWL+KVTFLGHVVSSE VSVDPAKI+AVT+WPRPSTVSE
Sbjct: 518 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSERVSVDPAKIEAVTNWPRPSTVSE 577

Query: 181 IRSFLGLAGYYRRFVEDFSLIASPLT 207
           IRSFLGLAGYYRRFVEDFS IASPLT
Sbjct: 578 IRSFLGLAGYYRRFVEDFSRIASPLT 603

BLAST of Cmc10g0276341 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 3.4e-19
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 0

Query: 120 HLHQVLETLRANKLYAKFFKCEFWLKKVTFLG--HVVSSEGVSVDPAKIKAVTSWPRPST 179
           HL  VL+    ++ YA   KC F   ++ +LG  H++S EGVS DPAK++A+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 180 VSEIRSFLGLAGYYRRFVEDFSLIASPLT 207
            +E+R FLGL GYYRRFV+++  I  PLT
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLT 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0054634.11.5e-10492.72pol protein [Cucumis melo var. makuwa][more]
KAA0033486.17.2e-10492.23reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0051719.12.1e-10392.23pol protein [Cucumis melo var. makuwa][more]
KAA0057168.14.7e-10392.23pol protein [Cucumis melo var. makuwa] >TYK27151.1 pol protein [Cucumis melo var... [more]
KAA0036538.11.0e-10291.26pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P208256.0e-4540.59Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
P043235.1e-4439.71Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
Q8I7P92.1e-4238.24Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
Q993152.6e-4041.38Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q7LHG52.6e-4041.38Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Match NameE-valueIdentityDescription
A0A5A7UHL77.0e-10592.72Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24... [more]
A0A5A7SU253.5e-10492.23Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold26... [more]
A0A5A7UE011.0e-10392.23Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60... [more]
A0A5A7UPX42.3e-10392.23Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1920G00300 P... [more]
A0A5A7T1655.0e-10391.26Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19... [more]
Match NameE-valueIdentityDescription
ATMG00860.13.4e-1947.19DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 2..153
e-value: 1.8E-23
score: 83.2
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 19..154
e-value: 6.7E-64
score: 217.1
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 164..206
e-value: 6.8E-16
score: 60.1
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 3..79
e-value: 6.7E-64
score: 217.1
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 4..206
NoneNo IPR availablePANTHERPTHR24559:SF324TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEINcoord: 4..206
NoneNo IPR availableCDDcd01647RT_LTRcoord: 3..154
e-value: 8.10782E-78
score: 229.019
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 3..206

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0276341.1Cmc10g0276341.1mRNA