Cmc10g0272621 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0272621
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr10: 6082704 .. 6083108 (+)
RNA-Seq Expression	Cmc10g0272621
Synteny	Cmc10g0272621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGATTAGTTGACGAAATGTTGGCTTCTGGAATAATTCGACCTAGCACCAGCCCATATTCAAGTCCTGTGCTGTTAGTAAGGAAAAAGGATGGAAGCTGGAGGTTTTGTGTTGACTACCGAGCGCTCAATAATGTCACCATACCAGATAAATTTCCAATTCCTGTCATTGAAGAGCTGTTTGATGAGTTGAATGGTGCAAACATGTTCTCCAAGATTGATCTTAAAGCCGGCTACTACCAAATACGAATGCACCAAGAGGATGTGGAAAAGACAGCATTTCGCACTCATAAAGGCCATTATGAATTTCTGGTCATGCCCTTTGGTTTGACTAATGCACCTTCTACTTTCCAAGCTTTGATGAATGCCATTTTCAGGCCGTATATGAGGAGGTTTGTATAG

mRNA sequence

ATGGAAAGATTAGTTGACGAAATGTTGGCTTCTGGAATAATTCGACCTAGCACCAGCCCATATTCAAGTCCTGTGCTGTTAGTAAGGAAAAAGGATGGAAGCTGGAGGTTTTGTGTTGACTACCGAGCGCTCAATAATGTCACCATACCAGATAAATTTCCAATTCCTGTCATTGAAGAGCTGTTTGATGAGTTGAATGGTGCAAACATGTTCTCCAAGATTGATCTTAAAGCCGGCTACTACCAAATACGAATGCACCAAGAGGATGTGGAAAAGACAGCATTTCGCACTCATAAAGGCCATTATGAATTTCTGGTCATGCCCTTTGGTTTGACTAATGCACCTTCTACTTTCCAAGCTTTGATGAATGCCATTTTCAGGCCGTATATGAGGAGGTTTGTATAG

Coding sequence (CDS)

ATGGAAAGATTAGTTGACGAAATGTTGGCTTCTGGAATAATTCGACCTAGCACCAGCCCATATTCAAGTCCTGTGCTGTTAGTAAGGAAAAAGGATGGAAGCTGGAGGTTTTGTGTTGACTACCGAGCGCTCAATAATGTCACCATACCAGATAAATTTCCAATTCCTGTCATTGAAGAGCTGTTTGATGAGTTGAATGGTGCAAACATGTTCTCCAAGATTGATCTTAAAGCCGGCTACTACCAAATACGAATGCACCAAGAGGATGTGGAAAAGACAGCATTTCGCACTCATAAAGGCCATTATGAATTTCTGGTCATGCCCTTTGGTTTGACTAATGCACCTTCTACTTTCCAAGCTTTGATGAATGCCATTTTCAGGCCGTATATGAGGAGGTTTGTATAG

Protein sequence

MERLVDEMLASGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEELFDELNGANMFSKIDLKAGYYQIRMHQEDVEKTAFRTHKGHYEFLVMPFGLTNAPSTFQALMNAIFRPYMRRFV

Homology

[Close]

BLAST of Cmc10g0272621 vs. NCBI nr
Match: TYK23090.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 3.9e-66
Identity = 119/134 (88.81%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MERLVDEMLASGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 60
           MERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVT+PDKFPIPV+EE
Sbjct: 638 MERLVDEMLSSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVVEE 697

Query: 61  LFDELNGANMFSKIDLKAGYYQIRMHQEDVEKTAFRTHKGHYEFLVMPFGLTNAPSTFQA 120
           LFDELNGA++FSKIDLKAGY+QIRMH ED+EKTAFRTH+GHYEF+VMPFGLTNAPSTFQA
Sbjct: 698 LFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQA 757

Query: 121 LMNAIFRPYMRRFV 135
           LMN +F+P++RRFV
Sbjct: 758 LMNQVFKPFLRRFV 771

[Close]

BLAST of Cmc10g0272621 vs. NCBI nr
Match: TYK15990.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 3.9e-66
Identity = 119/134 (88.81%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MERLVDEMLASGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 60
           MERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVT+PDKFPIPV+EE
Sbjct: 698 MERLVDEMLSSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVVEE 757

Query: 61  LFDELNGANMFSKIDLKAGYYQIRMHQEDVEKTAFRTHKGHYEFLVMPFGLTNAPSTFQA 120
           LFDELNGA++FSKIDLKAGY+QIRMH ED+EKTAFRTH+GHYEF+VMPFGLTNAPSTFQA
Sbjct: 758 LFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQA 817

Query: 121 LMNAIFRPYMRRFV 135
           LMN +F+P++RRFV
Sbjct: 818 LMNQVFKPFLRRFV 831

[Close]

BLAST of Cmc10g0272621 vs. NCBI nr
Match: KAA0049776.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 3.9e-66
Identity = 119/134 (88.81%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MERLVDEMLASGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 60
           MERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVT+PDKFPIPV+EE
Sbjct: 638 MERLVDEMLSSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVVEE 697

Query: 61  LFDELNGANMFSKIDLKAGYYQIRMHQEDVEKTAFRTHKGHYEFLVMPFGLTNAPSTFQA 120
           LFDELNGA++FSKIDLKAGY+QIRMH ED+EKTAFRTH+GHYEF+VMPFGLTNAPSTFQA
Sbjct: 698 LFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQA 757

Query: 121 LMNAIFRPYMRRFV 135
           LMN +F+P++RRFV
Sbjct: 758 LMNQVFKPFLRRFV 771

[Close]

BLAST of Cmc10g0272621 vs. NCBI nr
Match: KAA0049630.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 3.9e-66
Identity = 119/134 (88.81%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MERLVDEMLASGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 60
           MERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVT+PDKFPIPV+EE
Sbjct: 698 MERLVDEMLSSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVVEE 757

Query: 61  LFDELNGANMFSKIDLKAGYYQIRMHQEDVEKTAFRTHKGHYEFLVMPFGLTNAPSTFQA 120
           LFDELNGA++FSKIDLKAGY+QIRMH ED+EKTAFRTH+GHYEF+VMPFGLTNAPSTFQA
Sbjct: 758 LFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQA 817

Query: 121 LMNAIFRPYMRRFV 135
           LMN +F+P++RRFV
Sbjct: 818 LMNQVFKPFLRRFV 831

[Close]

BLAST of Cmc10g0272621 vs. NCBI nr
Match: KAA0062227.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 261.2 bits (666), Expect = 5.1e-66
Identity = 124/126 (98.41%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 8   MLASGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEELFDELNG 67
           MLASGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEELFDELNG
Sbjct: 1   MLASGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEELFDELNG 60

Query: 68  ANMFSKIDLKAGYYQIRMHQEDVEKTAFRTHKGHYEFLVMPFGLTNAPSTFQALMNAIFR 127
            NMFSKIDLKAGYYQIRMHQEDVEKTAFRTHKGHYEFLVMPFGLTNAPSTFQALMNAIFR
Sbjct: 61  VNMFSKIDLKAGYYQIRMHQEDVEKTAFRTHKGHYEFLVMPFGLTNAPSTFQALMNAIFR 120

Query: 128 PYMRRF 134
           PYMR F
Sbjct: 121 PYMRSF 126

[Close]

BLAST of Cmc10g0272621 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.4e-33
Identity = 67/137 (48.91%), Postives = 89/137 (64.96%), Query Frame = 0


Query: 1   MERLVDEMLASGIIRPSTSPYSSPVLLVRKKD-----GSWRFCVDYRALNNVTIPDKFPI 60
           +E  V EML  G+IR S SPY+SP  +V KK        +R  +DYR LN +TIPD++PI
Sbjct: 222 VENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPI 281

Query: 61  PVIEELFDELNGANMFSKIDLKAGYYQIRMHQEDVEKTAFRTHKGHYEFLVMPFGLTNAP 120
           P ++E+  +L     F+ IDL  G++QI M +E + KTAF T  GHYE+L MPFGL NAP
Sbjct: 282 PNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAP 341

Query: 121 STFQALMNAIFRPYMRR 133
           +TFQ  MN I RP + +
Sbjct: 342 ATFQRCMNNILRPLLNK 358

[Close]

BLAST of Cmc10g0272621 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.0e-32
Identity = 66/137 (48.18%), Postives = 89/137 (64.96%), Query Frame = 0


Query: 1   MERLVDEMLASGIIRPSTSPYSSPVLLVRKKDGS-----WRFCVDYRALNNVTIPDKFPI 60
           +E  + +ML  GIIR S SPY+SP+ +V KK  +     +R  +DYR LN +T+ D+ PI
Sbjct: 223 VESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPI 282

Query: 61  PVIEELFDELNGANMFSKIDLKAGYYQIRMHQEDVEKTAFRTHKGHYEFLVMPFGLTNAP 120
           P ++E+  +L   N F+ IDL  G++QI M  E V KTAF T  GHYE+L MPFGL NAP
Sbjct: 283 PNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAP 342

Query: 121 STFQALMNAIFRPYMRR 133
           +TFQ  MN I RP + +
Sbjct: 343 ATFQRCMNDILRPLLNK 359

[Close]

BLAST of Cmc10g0272621 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 138.3 bits (347), Expect = 6.5e-32
Identity = 66/127 (51.97%), Postives = 85/127 (66.93%), Query Frame = 0


Query: 1   MERLVDEMLASGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 60
           + ++V ++L +  I PS SP SSPV+LV KKDG++R CVDYR LN  TI D FP+P I+ 
Sbjct: 612 INKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDN 671

Query: 61  LFDELNGANMFSKIDLKAGYYQIRMHQEDVEKTAFRTHKGHYEFLVMPFGLTNAPSTFQA 120
           L   +  A +F+ +DL +GY+QI M  +D  KTAF T  G YE+ VMPFGL NAPSTF  
Sbjct: 672 LLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR 731

Query: 121 LMNAIFR 128
            M   FR
Sbjct: 732 YMADTFR 738

[Close]

BLAST of Cmc10g0272621 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 6.5e-32
Identity = 66/127 (51.97%), Postives = 85/127 (66.93%), Query Frame = 0


Query: 1   MERLVDEMLASGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 60
           + ++V ++L +  I PS SP SSPV+LV KKDG++R CVDYR LN  TI D FP+P I+ 
Sbjct: 638 INKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDN 697

Query: 61  LFDELNGANMFSKIDLKAGYYQIRMHQEDVEKTAFRTHKGHYEFLVMPFGLTNAPSTFQA 120
           L   +  A +F+ +DL +GY+QI M  +D  KTAF T  G YE+ VMPFGL NAPSTF  
Sbjct: 698 LLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR 757

Query: 121 LMNAIFR 128
            M   FR
Sbjct: 758 YMADTFR 764

[Close]

BLAST of Cmc10g0272621 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.5e-31
Identity = 64/135 (47.41%), Postives = 89/135 (65.93%), Query Frame = 0


Query: 1   MERLVDEMLASGIIRPSTSPYSSPVLLVRKK-----DGSWRFCVDYRALNNVTIPDKFPI 60
           +ER +DE+L  GIIRPS SPY+SP+ +V KK     +  +R  VD++ LN VTIPD +PI
Sbjct: 139 VERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPI 198

Query: 61  PVIEELFDELNGANMFSKIDLKAGYYQIRMHQEDVEKTAFRTHKGHYEFLVMPFGLTNAP 120
           P I      L  A  F+ +DL +G++QI M + D+ KTAF T  G YEFL +PFGL NAP
Sbjct: 199 PDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAP 258

Query: 121 STFQALMNAIFRPYM 131
           + FQ +++ I R ++
Sbjct: 259 AIFQRMIDDILREHI 273

[Close]

BLAST of Cmc10g0272621 vs. ExPASy TrEMBL
Match: A0A5D3CXB1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001180 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.9e-66
Identity = 119/134 (88.81%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MERLVDEMLASGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 60
           MERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVT+PDKFPIPV+EE
Sbjct: 698 MERLVDEMLSSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVVEE 757

Query: 61  LFDELNGANMFSKIDLKAGYYQIRMHQEDVEKTAFRTHKGHYEFLVMPFGLTNAPSTFQA 120
           LFDELNGA++FSKIDLKAGY+QIRMH ED+EKTAFRTH+GHYEF+VMPFGLTNAPSTFQA
Sbjct: 758 LFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQA 817

Query: 121 LMNAIFRPYMRRFV 135
           LMN +F+P++RRFV
Sbjct: 818 LMNQVFKPFLRRFV 831

[Close]

BLAST of Cmc10g0272621 vs. ExPASy TrEMBL
Match: A0A5A7U2S1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00940 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.9e-66
Identity = 119/134 (88.81%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MERLVDEMLASGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 60
           MERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVT+PDKFPIPV+EE
Sbjct: 698 MERLVDEMLSSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVVEE 757

Query: 61  LFDELNGANMFSKIDLKAGYYQIRMHQEDVEKTAFRTHKGHYEFLVMPFGLTNAPSTFQA 120
           LFDELNGA++FSKIDLKAGY+QIRMH ED+EKTAFRTH+GHYEF+VMPFGLTNAPSTFQA
Sbjct: 758 LFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQA 817

Query: 121 LMNAIFRPYMRRFV 135
           LMN +F+P++RRFV
Sbjct: 818 LMNQVFKPFLRRFV 831

[Close]

BLAST of Cmc10g0272621 vs. ExPASy TrEMBL
Match: A0A5D3DI73 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00700 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.9e-66
Identity = 119/134 (88.81%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MERLVDEMLASGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 60
           MERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVT+PDKFPIPV+EE
Sbjct: 638 MERLVDEMLSSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVVEE 697

Query: 61  LFDELNGANMFSKIDLKAGYYQIRMHQEDVEKTAFRTHKGHYEFLVMPFGLTNAPSTFQA 120
           LFDELNGA++FSKIDLKAGY+QIRMH ED+EKTAFRTH+GHYEF+VMPFGLTNAPSTFQA
Sbjct: 698 LFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQA 757

Query: 121 LMNAIFRPYMRRFV 135
           LMN +F+P++RRFV
Sbjct: 758 LMNQVFKPFLRRFV 771

[Close]

BLAST of Cmc10g0272621 vs. ExPASy TrEMBL
Match: A0A5A7U6J3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G001310 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.9e-66
Identity = 119/134 (88.81%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MERLVDEMLASGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 60
           MERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVT+PDKFPIPV+EE
Sbjct: 638 MERLVDEMLSSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVVEE 697

Query: 61  LFDELNGANMFSKIDLKAGYYQIRMHQEDVEKTAFRTHKGHYEFLVMPFGLTNAPSTFQA 120
           LFDELNGA++FSKIDLKAGY+QIRMH ED+EKTAFRTH+GHYEF+VMPFGLTNAPSTFQA
Sbjct: 698 LFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQA 757

Query: 121 LMNAIFRPYMRRFV 135
           LMN +F+P++RRFV
Sbjct: 758 LMNQVFKPFLRRFV 771

[Close]

BLAST of Cmc10g0272621 vs. ExPASy TrEMBL
Match: A0A5A7T5N7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00890 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.5e-66
Identity = 119/134 (88.81%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MERLVDEMLASGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 60
           MERLVDEML SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVT+PDKFPIPV+EE
Sbjct: 52  MERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVVEE 111

Query: 61  LFDELNGANMFSKIDLKAGYYQIRMHQEDVEKTAFRTHKGHYEFLVMPFGLTNAPSTFQA 120
           LFDELNGA++FSKIDLKAGY+QIRMH ED+EKTAFRTH+GHYEF+VMPFGLTNAPSTFQA
Sbjct: 112 LFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQA 171

Query: 121 LMNAIFRPYMRRFV 135
           LMN +F+P++RRFV
Sbjct: 172 LMNQVFKPFLRRFV 185

[Close]

BLAST of Cmc10g0272621 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.3e-06
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 1  MERLVDEMLASGIIRPSTSPYSSPVLLVRKKDGSW 36
          ++  + EML + II+PS SPYSSPVLLV+KKDG W
Sbjct: 45 LKNWLGEMLEARIIQPSISPYSSPVLLVQKKDGGW 79

The following BLAST results are available for this feature:

BLAST of Cmc10g0272621 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23090.1	3.9e-66	88.81	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK15990.1	3.9e-66	88.81	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0049776.1	3.9e-66	88.81	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0049630.1	3.9e-66	88.81	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062227.1	5.1e-66	98.41	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc10g0272621 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	3.4e-33	48.91	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	5.0e-32	48.18	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q99315	6.5e-32	51.97	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	6.5e-32	51.97	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q8I7P9	5.5e-31	47.41	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of Cmc10g0272621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXB1	1.9e-66	88.81	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U2S1	1.9e-66	88.81	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DI73	1.9e-66	88.81	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U6J3	1.9e-66	88.81	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7T5N7	2.5e-66	88.81	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc10g0272621 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00850.1	1.3e-06	62.86	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..113 e-value: 1.1E-59 score: 203.2
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 2..129
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..129
None	No IPR available	CDD	cd01647	RT_LTR	coord: 12..134 e-value: 8.06491E-71 score: 208.218
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 53..129 e-value: 1.1E-59 score: 203.2
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 28..132 e-value: 2.2E-17 score: 63.3
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 9..134 score: 9.183103
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0272621.1	Cmc10g0272621.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0007034	vacuolar transport
cellular_component	GO:0005768	endosome
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding