Cmc09g0251931 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0251931
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr09: 17937094 .. 17937645 (+)
RNA-Seq Expression	Cmc09g0251931
Synteny	Cmc09g0251931

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTAATGAATCAACAAGGGCTGTTGATGAAGTTGGTCCCTCATCAAGAGTTGATGAACCGACCACATCAGGTCAATCTCATCCTTCTCAATCGTTGAGAATGCCTCGACGCAGTGGGAGGATTGTATCACAACCTAACCGTTATTTGGGTTTAACTGAAACTCTGGTTGTCATACCAGATGATGGTGTTGAGGATCCATCGTCCTATAAACAGGCAATGAATGATGTAGATAAGGACCAATGGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTACTTCAATTCAGTGTGGGAGCTTGTAGATCTCACTAAAGGGATAAAACCTATAGGGTGTAAATGGATCTATAAGAGAAAGAGAGATTCAGCTGAGAAGGTACGGACCTTCAAAGCTAGACTTGTAGCAAAAGGGTATACCCAAAGGAAAGGGGTTGACTATGAGGAAACTTTTTCCCCTGTTGCTATGTTAAAATCTATAAGGATTCTCTTGTCCATCTCCACATTTTAA

mRNA sequence

ATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTAATGAATCAACAAGGGCTGTTGATGAAGTTGGTCCCTCATCAAGAGTTGATGAACCGACCACATCAGGTCAATCTCATCCTTCTCAATCGTTGAGAATGCCTCGACGCAGTGGGAGGATTGTATCACAACCTAACCGTTATTTGGGTTTAACTGAAACTCTGGTTGTCATACCAGATGATGGTGTTGAGGATCCATCGTCCTATAAACAGGCAATGAATGATGTAGATAAGGACCAATGGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTACTTCAATTCAGTGTGGGAGCTTGTAGATCTCACTAAAGGGATAAAACCTATAGGGTGTAAATGGATCTATAAGAGAAAGAGAGATTCAGCTGAGAAGGTACGGACCTTCAAAGCTAGACTTGTAGCAAAAGGGTATACCCAAAGGAAAGGGGTTGACTATGAGGAAACTTTTTCCCCTGTTGCTATGTTAAAATCTATAAGGATTCTCTTGTCCATCTCCACATTTTAA

Coding sequence (CDS)

ATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTAATGAATCAACAAGGGCTGTTGATGAAGTTGGTCCCTCATCAAGAGTTGATGAACCGACCACATCAGGTCAATCTCATCCTTCTCAATCGTTGAGAATGCCTCGACGCAGTGGGAGGATTGTATCACAACCTAACCGTTATTTGGGTTTAACTGAAACTCTGGTTGTCATACCAGATGATGGTGTTGAGGATCCATCGTCCTATAAACAGGCAATGAATGATGTAGATAAGGACCAATGGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTACTTCAATTCAGTGTGGGAGCTTGTAGATCTCACTAAAGGGATAAAACCTATAGGGTGTAAATGGATCTATAAGAGAAAGAGAGATTCAGCTGAGAAGGTACGGACCTTCAAAGCTAGACTTGTAGCAAAAGGGTATACCCAAAGGAAAGGGGTTGACTATGAGGAAACTTTTTCCCCTGTTGCTATGTTAAAATCTATAAGGATTCTCTTGTCCATCTCCACATTTTAA

Protein sequence

MRDHKPRSKLVLNEATNESTRAVDEVGPSSRVDEPTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETLVVIPDDGVEDPSSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLTKGIKPIGCKWIYKRKRDSAEKVRTFKARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLSISTF

Homology

[Close]

BLAST of Cmc09g0251931 vs. NCBI nr
Match: TYK28885.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 337.0 bits (863), Expect = 9.9e-89
Identity = 168/182 (92.31%), Postives = 176/182 (96.70%), Query Frame = 0


Query: 2   RDHKPRSKLVLNEATNESTRAVDEVGPSSRVDEPTTSGQSHPSQSLRMPRRSGRIVSQPN 61
           RDHKPRSKLVLNEAT+ESTR VDEVGPSSRVDE TTSGQSHPSQSLRMPRRSGR+VSQPN
Sbjct: 446 RDHKPRSKLVLNEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPN 505

Query: 62  RYLGLTETLVVIPDDGVEDPSSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLTKG 121
           RYLGLTET VVIPDDGVEDP SYKQAMNDVDKDQWVKA+DLEMESMYFNSVWELVDL +G
Sbjct: 506 RYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAIDLEMESMYFNSVWELVDLPEG 565

Query: 122 IKPIGCKWIYKRKRDSAEKVRTFKARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLSIS 181
           +KPIGCKWIYKRKRDSA KV+TFKARLVAKGYTQR+GVDYEETFSPVAMLKSIRILLSI+
Sbjct: 566 VKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIA 625

Query: 182 TF 184
           TF
Sbjct: 626 TF 627

[Close]

BLAST of Cmc09g0251931 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-88
Identity = 168/183 (91.80%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MRDHKPRSKLVLNEATNESTRAVDEVGPSSRVDEPTTSGQSHPSQSLRMPRRSGRIVSQP 60
           MR+HKPRSKLVL+EAT+ESTR VDEVGPSSRVDE TTSGQSHPSQSLRMPRRSGR+VSQP
Sbjct: 243 MRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQP 302

Query: 61  NRYLGLTETLVVIPDDGVEDPSSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLTK 120
           NRYLGLTET VVIPDDGVEDP SYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDL +
Sbjct: 303 NRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPE 362

Query: 121 GIKPIGCKWIYKRKRDSAEKVRTFKARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLSI 180
           G+KPIGCKWIYKRKRDSA KV+TFKARLVAKGYTQR+GVDYEETFSPVAMLKSIRILLSI
Sbjct: 363 GVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSI 422

Query: 181 STF 184
           +TF
Sbjct: 423 ATF 425

[Close]

BLAST of Cmc09g0251931 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-88
Identity = 168/183 (91.80%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MRDHKPRSKLVLNEATNESTRAVDEVGPSSRVDEPTTSGQSHPSQSLRMPRRSGRIVSQP 60
           MR+HKPRSKLVL+EAT+ESTR VDEVGPSSRVDE TTSGQSHPSQSLRMPRRSGR+VSQP
Sbjct: 633 MRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQP 692

Query: 61  NRYLGLTETLVVIPDDGVEDPSSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLTK 120
           NRYLGLTET VVIPDDGVEDP SYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDL +
Sbjct: 693 NRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPE 752

Query: 121 GIKPIGCKWIYKRKRDSAEKVRTFKARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLSI 180
           G+KPIGCKWIYKRKRDSA KV+TFKARLVAKGYTQR+GVDYEETFSPVAMLKSIRILLSI
Sbjct: 753 GVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSI 812

Query: 181 STF 184
           +TF
Sbjct: 813 ATF 815

[Close]

BLAST of Cmc09g0251931 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-88
Identity = 168/183 (91.80%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MRDHKPRSKLVLNEATNESTRAVDEVGPSSRVDEPTTSGQSHPSQSLRMPRRSGRIVSQP 60
           MR+HKPRSKLVL+EAT+ESTR VDEVGPSSRVDE TTSGQSHPSQSLRMPRRSGR+VSQP
Sbjct: 507 MRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQP 566

Query: 61  NRYLGLTETLVVIPDDGVEDPSSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLTK 120
           NRYLGLTET VVIPDDGVEDP SYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDL +
Sbjct: 567 NRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPE 626

Query: 121 GIKPIGCKWIYKRKRDSAEKVRTFKARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLSI 180
           G+KPIGCKWIYKRKRDSA KV+TFKARLVAKGYTQR+GVDYEETFSPVAMLKSIRILLSI
Sbjct: 627 GVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSI 686

Query: 181 STF 184
           +TF
Sbjct: 687 ATF 689

[Close]

BLAST of Cmc09g0251931 vs. NCBI nr
Match: TYK02840.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-88
Identity = 168/183 (91.80%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MRDHKPRSKLVLNEATNESTRAVDEVGPSSRVDEPTTSGQSHPSQSLRMPRRSGRIVSQP 60
           MR+HKPRSKLVL+EAT+ESTR VDEVGPSSRVDE TTSGQSHPSQSLRMPRRSGR+VSQP
Sbjct: 507 MRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQP 566

Query: 61  NRYLGLTETLVVIPDDGVEDPSSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLTK 120
           NRYLGLTET VVIPDDGVEDP SYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDL +
Sbjct: 567 NRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPE 626

Query: 121 GIKPIGCKWIYKRKRDSAEKVRTFKARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLSI 180
           G+KPIGCKWIYKRKRDSA KV+TFKARLVAKGYTQR+GVDYEETFSPVAMLKSIRILLSI
Sbjct: 627 GVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSI 686

Query: 181 STF 184
           +TF
Sbjct: 687 ATF 689

[Close]

BLAST of Cmc09g0251931 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.4e-23
Identity = 63/150 (42.00%), Postives = 95/150 (63.33%), Query Frame = 0


Query: 32  VDEPTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETLVVIPDDGVEDPSSYKQAMNDV 91
           V+ PT   + H  Q L   RRS R   +  RY   +   V+I DD   +P S K+ ++  
Sbjct: 771 VEHPTQGEEQH--QPL---RRSERPRVESRRY--PSTEYVLISDD--REPESLKEVLSHP 830

Query: 92  DKDQWVKAMDLEMESMYFNSVWELVDLTKGIKPIGCKWIYKRKRDSAEKVRTFKARLVAK 151
           +K+Q +KAM  EMES+  N  ++LV+L KG +P+ CKW++K K+D   K+  +KARLV K
Sbjct: 831 EKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVK 890

Query: 152 GYTQRKGVDYEETFSPVAMLKSIRILLSIS 182
           G+ Q+KG+D++E FSPV  + SIR +LS++
Sbjct: 891 GFEQKKGIDFDEIFSPVVKMTSIRTILSLA 911

[Close]

BLAST of Cmc09g0251931 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.2e-16
Identity = 55/169 (32.54%), Postives = 83/169 (49.11%), Query Frame = 0


Query: 28   PSSRVDEPTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGL-TETLVVIPDDGVEDP----- 87
            PS+ + EP +   S  S     P      + Q N    + T ++     DG+  P     
Sbjct: 869  PSTSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQKYS 928

Query: 88   --------SSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELV-DLTKGIKPIGCKWIYK 147
                    S  + A+  +  D+W +AM  E+ +   N  W+LV      +  +GC+WI+ 
Sbjct: 929  YATSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFT 988

Query: 148  RKRDSAEKVRTFKARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLSIS 182
            +K +S   +  +KARLVAKGY QR G+DY ETFSPV    SIRI+L ++
Sbjct: 989  KKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVA 1037

[Close]

BLAST of Cmc09g0251931 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.8e-15
Identity = 62/194 (31.96%), Postives = 91/194 (46.91%), Query Frame = 0


Query: 13   NEATNESTRAVDE-----VGPSSRVDEPTTSGQSH------PSQSLRMPRRSGRIVSQPN 72
            N  TNES   + +        SS    PTTS  S       PS  +  P    +IV+  N
Sbjct: 861  NNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNN 920

Query: 73   RYLGLTETLVVIPDDGVEDP-------------SSYKQAMNDVDKDQWVKAMDLEMESMY 132
            +    T ++      G+  P             S  + A+  +  ++W  AM  E+ +  
Sbjct: 921  QAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQI 980

Query: 133  FNSVWELVDLTKG-IKPIGCKWIYKRKRDSAEKVRTFKARLVAKGYTQRKGVDYEETFSP 182
             N  W+LV      +  +GC+WI+ +K +S   +  +KARLVAKGY QR G+DY ETFSP
Sbjct: 981  GNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSP 1040

[Close]

BLAST of Cmc09g0251931 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 75.9 bits (185), Expect = 5.4e-13
Identity = 53/200 (26.50%), Postives = 95/200 (47.50%), Query Frame = 0


Query: 1   MRDHKPRSKLVLNEATNESTRAVDEVGPSSRVDEPTTSGQSHPSQSLR------------ 60
           ++D K  +K  LNE  ++  +  D +  S     P  S +S  ++ L+            
Sbjct: 793 LKDSKESNKYFLNE--SKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDG 852

Query: 61  ---MPRRSGRIVSQP----NRYLGLTETLVVIPDDGVED-PSSYKQAMNDVDKDQWVKAM 120
              + RRS R+ ++P    N        +V+       D P+S+ +     DK  W +A+
Sbjct: 853 IEIINRRSERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAI 912

Query: 121 DLEMESMYFNSVWELVDLTKGIKPIGCKWIYKRKRDSAEKVRTFKARLVAKGYTQRKGVD 180
           + E+ +   N+ W +    +    +  +W++  K +       +KARLVA+G+TQ+  +D
Sbjct: 913 NTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQID 972

[Close]

BLAST of Cmc09g0251931 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-11
Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = 0


Query: 49  MPRRSGRIVSQPNRYLGLTETLVVIPDDGVEDPSSYKQAMNDVDKDQWVKAMDLEMESMY 108
           M  RS   +++ N    LT T  +      ++P S   A+ D     W +AM  E++++ 
Sbjct: 1   MLTRSKAGINKLNPKYSLTITTTI-----KKEPKSVIFALKD---PGWCQAMQEELDALS 60

Query: 109 FNSVWELVDLTKGIKPIGCKWIYKRKRDSAEKVRTFKARLVAKGYTQRKGVDYEETFSPV 168
            N  W LV        +GCKW++K K  S   +   KARLVAKG+ Q +G+ + ET+SPV
Sbjct: 61  RNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPV 120

Query: 169 AMLKSIRILLSIS 182
               +IR +L+++
Sbjct: 121 VRTATIRTILNVA 125

[Close]

BLAST of Cmc09g0251931 vs. ExPASy TrEMBL
Match: A0A5D3DZX8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold381G00320 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.8e-89
Identity = 168/182 (92.31%), Postives = 176/182 (96.70%), Query Frame = 0


Query: 2   RDHKPRSKLVLNEATNESTRAVDEVGPSSRVDEPTTSGQSHPSQSLRMPRRSGRIVSQPN 61
           RDHKPRSKLVLNEAT+ESTR VDEVGPSSRVDE TTSGQSHPSQSLRMPRRSGR+VSQPN
Sbjct: 446 RDHKPRSKLVLNEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPN 505

Query: 62  RYLGLTETLVVIPDDGVEDPSSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLTKG 121
           RYLGLTET VVIPDDGVEDP SYKQAMNDVDKDQWVKA+DLEMESMYFNSVWELVDL +G
Sbjct: 506 RYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAIDLEMESMYFNSVWELVDLPEG 565

Query: 122 IKPIGCKWIYKRKRDSAEKVRTFKARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLSIS 181
           +KPIGCKWIYKRKRDSA KV+TFKARLVAKGYTQR+GVDYEETFSPVAMLKSIRILLSI+
Sbjct: 566 VKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIA 625

Query: 182 TF 184
           TF
Sbjct: 626 TF 627

[Close]

BLAST of Cmc09g0251931 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 6.3e-89
Identity = 168/183 (91.80%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MRDHKPRSKLVLNEATNESTRAVDEVGPSSRVDEPTTSGQSHPSQSLRMPRRSGRIVSQP 60
           MR+HKPRSKLVL+EAT+ESTR VDEVGPSSRVDE TTSGQSHPSQSLRMPRRSGR+VSQP
Sbjct: 633 MRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQP 692

Query: 61  NRYLGLTETLVVIPDDGVEDPSSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLTK 120
           NRYLGLTET VVIPDDGVEDP SYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDL +
Sbjct: 693 NRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPE 752

Query: 121 GIKPIGCKWIYKRKRDSAEKVRTFKARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLSI 180
           G+KPIGCKWIYKRKRDSA KV+TFKARLVAKGYTQR+GVDYEETFSPVAMLKSIRILLSI
Sbjct: 753 GVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSI 812

Query: 181 STF 184
           +TF
Sbjct: 813 ATF 815

[Close]

BLAST of Cmc09g0251931 vs. ExPASy TrEMBL
Match: A0A5D3BUN8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00360 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 6.3e-89
Identity = 168/183 (91.80%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MRDHKPRSKLVLNEATNESTRAVDEVGPSSRVDEPTTSGQSHPSQSLRMPRRSGRIVSQP 60
           MR+HKPRSKLVL+EAT+ESTR VDEVGPSSRVDE TTSGQSHPSQSLRMPRRSGR+VSQP
Sbjct: 507 MRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQP 566

Query: 61  NRYLGLTETLVVIPDDGVEDPSSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLTK 120
           NRYLGLTET VVIPDDGVEDP SYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDL +
Sbjct: 567 NRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPE 626

Query: 121 GIKPIGCKWIYKRKRDSAEKVRTFKARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLSI 180
           G+KPIGCKWIYKRKRDSA KV+TFKARLVAKGYTQR+GVDYEETFSPVAMLKSIRILLSI
Sbjct: 627 GVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSI 686

Query: 181 STF 184
           +TF
Sbjct: 687 ATF 689

[Close]

BLAST of Cmc09g0251931 vs. ExPASy TrEMBL
Match: A0A5D3CYF4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001110 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 6.3e-89
Identity = 168/183 (91.80%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MRDHKPRSKLVLNEATNESTRAVDEVGPSSRVDEPTTSGQSHPSQSLRMPRRSGRIVSQP 60
           MR+HKPRSKLVL+EAT+ESTR VDEVGPSSRVDE TTSGQSHPSQSLRMPRRSGR+VSQP
Sbjct: 243 MRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQP 302

Query: 61  NRYLGLTETLVVIPDDGVEDPSSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLTK 120
           NRYLGLTET VVIPDDGVEDP SYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDL +
Sbjct: 303 NRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPE 362

Query: 121 GIKPIGCKWIYKRKRDSAEKVRTFKARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLSI 180
           G+KPIGCKWIYKRKRDSA KV+TFKARLVAKGYTQR+GVDYEETFSPVAMLKSIRILLSI
Sbjct: 363 GVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSI 422

Query: 181 STF 184
           +TF
Sbjct: 423 ATF 425

[Close]

BLAST of Cmc09g0251931 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 6.3e-89
Identity = 168/183 (91.80%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MRDHKPRSKLVLNEATNESTRAVDEVGPSSRVDEPTTSGQSHPSQSLRMPRRSGRIVSQP 60
           MR+HKPRSKLVL+EAT+ESTR VDEVGPSSRVDE TTSGQSHPSQSLRMPRRSGR+VSQP
Sbjct: 507 MRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQP 566

Query: 61  NRYLGLTETLVVIPDDGVEDPSSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLTK 120
           NRYLGLTET VVIPDDGVEDP SYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDL +
Sbjct: 567 NRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPE 626

Query: 121 GIKPIGCKWIYKRKRDSAEKVRTFKARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLSI 180
           G+KPIGCKWIYKRKRDSA KV+TFKARLVAKGYTQR+GVDYEETFSPVAMLKSIRILLSI
Sbjct: 627 GVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSI 686

Query: 181 STF 184
           +TF
Sbjct: 687 ATF 689

[Close]

BLAST of Cmc09g0251931 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 99.0 bits (245), Expect = 4.2e-21
Identity = 48/103 (46.60%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 79  EDPSSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLTKGIKPIGCKWIYKRKRDSA 138
           ++PS+Y +A   +    W  AMD E+ +M     WE+  L    KPIGCKW+YK K +S 
Sbjct: 84  KEPSTYNEAKEFL---VWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 143

Query: 139 EKVRTFKARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLSIS 182
             +  +KARLVAKGYTQ++G+D+ ETFSPV  L S++++L+IS
Sbjct: 144 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAIS 183

[Close]

BLAST of Cmc09g0251931 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 71.6 bits (174), Expect = 7.2e-13
Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = 0


Query: 49  MPRRSGRIVSQPNRYLGLTETLVVIPDDGVEDPSSYKQAMNDVDKDQWVKAMDLEMESMY 108
           M  RS   +++ N    LT T  +      ++P S   A+ D     W +AM  E++++ 
Sbjct: 1   MLTRSKAGINKLNPKYSLTITTTI-----KKEPKSVIFALKD---PGWCQAMQEELDALS 60

Query: 109 FNSVWELVDLTKGIKPIGCKWIYKRKRDSAEKVRTFKARLVAKGYTQRKGVDYEETFSPV 168
            N  W LV        +GCKW++K K  S   +   KARLVAKG+ Q +G+ + ET+SPV
Sbjct: 61  RNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPV 120

Query: 169 AMLKSIRILLSIS 182
               +IR +L+++
Sbjct: 121 VRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc09g0251931 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28885.1	9.9e-89	92.31	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15984.1	1.3e-88	91.80	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	1.3e-88	91.80	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	1.3e-88	91.80	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK02840.1	1.3e-88	91.80	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc09g0251931 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.4e-23	42.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	5.2e-16	32.54	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	5.8e-15	31.96	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	5.4e-13	26.50	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	1.0e-11	33.08	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc09g0251931 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZX8	4.8e-89	92.31	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold381G0032...	[more]
A0A5A7TZD0	6.3e-89	91.80	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5D3BUN8	6.3e-89	91.80	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G0036...	[more]
A0A5D3CYF4	6.3e-89	91.80	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00111...	[more]
A0A5A7UYE8	6.3e-89	91.80	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]

BLAST of Cmc09g0251931 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.2e-21	46.60	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	7.2e-13	33.08	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 110..181 e-value: 1.7E-22 score: 80.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 79..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0251931.1	Cmc09g0251931.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding