Cmc08g0232651 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0232651
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase domain-containing protein
Location	CMiso1.1chr08: 29623121 .. 29624245 (-)
RNA-Seq Expression	Cmc08g0232651
Synteny	Cmc08g0232651

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTTGTTCTGCGGCAACTCCCTGTTCGCTATCTTGGGCTTCCATTACTTTCGGGTAGGTTATGTCCTACTAATTTTGCTCCTTTTATTCAACGTATAACTAGCCGGATTTGCTTATGGGCTATAAGAGTTTTATCGTTTGCTGGGAGATTGCAACTTGTTTGTGCTATTCTACGCAATTTTCAAGTTTACTAGGCTAGTGCGTTTTTGTTGCCTGCGAGTGTGCATCATGAGGTGGATAAAATTCCGAGGTCTTATCTTTGGAAGGGTAAGGAGGATGGTAAGGGGGGTGTTAAGGTGGCTTGGGAGGAGGTGTGTCTTCCTTTTGAGGAGGGAGGGCTCGCTATAAGTGATAGGCCTTCTTGGAATATAGCAAGTTCTATGAAGATTCTTTGGTCGTTGCTAGTGAATTCTTGCTCTCTTTGGGTGACTTGGGTGGAAGCTTACATTCTTAAGGGGAGATCATTGTGGGCTGTTGATAGTGGGGTTGGTTGGTCTTGGTGCTTCAGGCTATCTTACGTAAGCGGATAGTCTAAAAGGACTTGTTTGTATGGAGGTGGGAGATGAGATGAGGTGTCGAGTTTGGCTTGATCCATGGTTGCAGAGTAATCCTATCCTTGAGCAGGTTGCGAAGAGGGTGCTTTATGACAGGACGAGTCAGAGGGAGGCTAGACTTTCTGAGTTTCTTGGTCTGAATGGGGAGTGGAGGTAGCTGTGTGTTTCTTTGGAGTTGGTTAATTTATGGGATAGGATTCAAGCTATTTGTCAGTGTCTTAATGTTAGGGATAGATGGGTCTGGGTTCCTGGCAGTCAGGGTGGTTTTTTTATAGCGAGTGCATGGGATACGATTCATCCTCGGAGTAGTCAGGTCCCTTGGCTGGTTTATTGTGGGATGGGGGTAATGTTCCTAAACATTCTTTTTGTACTTGGCTTGCCATTAAAGATAGGTTGAGTATGAGAGATAGGTTAAGTAGGTGGGATAGTTCAGTTTCATTGTCTTGCATTCTTTGTCCGGGAGGTGTCGAGTCTCGTGATCATTTGTTCTTTTCATGTCCTTTTGGGAGGGTTGTTTGGTCTCAGGTCCTTCTGGTTATGGCTTCCTCTCACAGGACTGGGTATTAG

mRNA sequence

ATGGGTTTTGTTCTGCGGCAACTCCCTGTTCGCTATCTTGGGCTTCCATTACTTTCGGGTAGGTTATGTCCTACTAATTTTGCTCCTTTTATTCAACGTATAACTAGCCGGATTTGCTTATGGGCTATAAGAGTTTTATCGTTTGCTGGGAGATTGCAACTTGTGGATAAAATTCCGAGGTCTTATCTTTGGAAGGGTAAGGAGGATGGTAAGGGGGGTGTTAAGGTGGCTTGGGAGGAGGTGTGTCTTCCTTTTGAGGAGGGAGGGCTCGCTATAAGTGATAGGCCTTCTTGGAATATAGCAAGTTCTATGAAGATTCTTTGGTCGTTGCTAGTGAATTCTTGCTCTCTTTGGGTGACTTGGGTGGAAGCTTACATTCTTAAGGGGAGATCATTGTGGGCTGTTGATAGTGGGTCAGGTCCCTTGGCTGGTTTATTGTGGGATGGGGGTAATGTTCCTAAACATTCTTTTTGTACTTGGCTTGCCATTAAAGATAGGTTGAGTATGAGAGATAGGTTAAGTAGGTGGGATAGTTCAGTTTCATTGTCTTGCATTCTTTGTCCGGGAGGTGTCGAGTCTCGTGATCATTTGTTCTTTTCATGTCCTTTTGGGAGGGTTGTTTGGTCTCAGGTCCTTCTGGTTATGGCTTCCTCTCACAGGACTGGGTATTAG

Coding sequence (CDS)

ATGGGTTTTGTTCTGCGGCAACTCCCTGTTCGCTATCTTGGGCTTCCATTACTTTCGGGTAGGTTATGTCCTACTAATTTTGCTCCTTTTATTCAACGTATAACTAGCCGGATTTGCTTATGGGCTATAAGAGTTTTATCGTTTGCTGGGAGATTGCAACTTGTGGATAAAATTCCGAGGTCTTATCTTTGGAAGGGTAAGGAGGATGGTAAGGGGGGTGTTAAGGTGGCTTGGGAGGAGGTGTGTCTTCCTTTTGAGGAGGGAGGGCTCGCTATAAGTGATAGGCCTTCTTGGAATATAGCAAGTTCTATGAAGATTCTTTGGTCGTTGCTAGTGAATTCTTGCTCTCTTTGGGTGACTTGGGTGGAAGCTTACATTCTTAAGGGGAGATCATTGTGGGCTGTTGATAGTGGGTCAGGTCCCTTGGCTGGTTTATTGTGGGATGGGGGTAATGTTCCTAAACATTCTTTTTGTACTTGGCTTGCCATTAAAGATAGGTTGAGTATGAGAGATAGGTTAAGTAGGTGGGATAGTTCAGTTTCATTGTCTTGCATTCTTTGTCCGGGAGGTGTCGAGTCTCGTGATCATTTGTTCTTTTCATGTCCTTTTGGGAGGGTTGTTTGGTCTCAGGTCCTTCTGGTTATGGCTTCCTCTCACAGGACTGGGTATTAG

Protein sequence

MGFVLRQLPVRYLGLPLLSGRLCPTNFAPFIQRITSRICLWAIRVLSFAGRLQLVDKIPRSYLWKGKEDGKGGVKVAWEEVCLPFEEGGLAISDRPSWNIASSMKILWSLLVNSCSLWVTWVEAYILKGRSLWAVDSGSGPLAGLLWDGGNVPKHSFCTWLAIKDRLSMRDRLSRWDSSVSLSCILCPGGVESRDHLFFSCPFGRVVWSQVLLVMASSHRTGY

Homology

[Close]

BLAST of Cmc08g0232651 vs. NCBI nr
Match: XP_031737043.1 (uncharacterized protein LOC116402131 [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 5.6e-70
Identity = 163/368 (44.29%), Postives = 186/368 (50.54%), Query Frame = 0


Query: 1   MGFVLRQLPVRYLGLPLLSGRLCPTNFAPFIQRITSRICLWAIRVLSFAGRLQL------ 60
           MGF +  LPVRYLGLPLL GRL   +  P IQRITSRI  W+ RVLSFAGRLQL      
Sbjct: 536 MGFSIGHLPVRYLGLPLLFGRLQSCDCDPLIQRITSRIRSWSARVLSFAGRLQLVRSVLR 595

Query: 61  -------------------VDKIPRSYLWKGKEDGKGGVKVAWEEVCLPFEEGGLAISDR 120
                              VDKI RSYLW+GKE+G+GG KVAW+EVCLPF+EGGLAI D 
Sbjct: 596 SLQVYWASVFMLPMKVHRDVDKILRSYLWRGKEEGRGGAKVAWDEVCLPFDEGGLAIRDG 655

Query: 121 PSWNIASSMKILWSLLVNSCSLWVTWVEAYILKGRSL----------------------- 180
            SWNIAS++KILW LLV S SLWV WVEAYILKGRS+                       
Sbjct: 656 SSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSMLGWVDLGVLGLSCVSGISIKLIL 715

Query: 181 ---WAV------------------------DSGS-------------------------- 224
              WA+                        D+GS                          
Sbjct: 716 RWRWAMAGSLECGWIQGGTIIQQFGERVIYDAGSRRDARLVDFMVRDGDWRWPLVSLDLM 775

[Close]

BLAST of Cmc08g0232651 vs. NCBI nr
Match: KAA0046851.1 (uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 254.2 bits (648), Expect = 1.0e-63
Identity = 146/321 (45.48%), Postives = 162/321 (50.47%), Query Frame = 0


Query: 28   APFIQRITSRICLWAIRVLSFAGRLQL-------------------------VDKIPRSY 87
            AP IQRITSRI  W  RVLSFAGRLQL                         VDKI RSY
Sbjct: 735  APLIQRITSRIRSWTARVLSFAGRLQLVRSVLRSLQVYWASVFVLPAYVHNEVDKILRSY 794

Query: 88   LWKGKEDGKGGVKVAWEEVCLPFEEGGLAISDRPSWNIASSMKILWSLLVNSCSLWVTWV 147
            LW+GKE+G+GG+KVAW +VCLPFEEGGL I D PSWNIA+++KI   LL N  SLWV W+
Sbjct: 795  LWRGKEEGRGGIKVAWVDVCLPFEEGGLGIRDGPSWNIANTLKI---LLTNLGSLWVAWM 854

Query: 148  EAYILKGRSLWAVDS--------------------------------------------- 207
            EAYILKG+SLW VDS                                             
Sbjct: 855  EAYILKGKSLWDVDSRVGRSWCLRAILRKREKMKHHVGERVLYDAASRREAKLSDFIDPN 914

Query: 208  ---------------------------------------GSGPLA--------------- 224
                                                   G   +A               
Sbjct: 915  GEWLWPRVSLELIDLWERVQEVSPCLSVSDSWVWVPGRQGGFSIASAWEAICPRGGRVLW 974

[Close]

BLAST of Cmc08g0232651 vs. NCBI nr
Match: TYK28099.1 (uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 242.3 bits (617), Expect = 4.1e-60
Identity = 141/278 (50.72%), Postives = 163/278 (58.63%), Query Frame = 0


Query: 1    MGFVLRQLPVRYLGLPLLSGRLCPTNFAPFIQRITSRICLWAIRVLSFAGRLQL------ 60
            MGF    LPVRYLGLPLL+GRL   + AP IQRITS+I  W  RVLSFAGRLQL      
Sbjct: 1014 MGFARGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSQIRSWNARVLSFAGRLQLVRSVLR 1073

Query: 61   -------------------VDKIPRSYLWKGKEDGKGGVKVAWEEVCLPFEEGGLAISDR 120
                               VDKI RSYLW+GKE+G+GG+KVAW +VCLPFEEGG  I D 
Sbjct: 1074 SLQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVCLPFEEGGFGIRDG 1133

Query: 121  PSWNIASSMKILWSLLVNSCSLWVTWVEAYILKGRSLWAVDS-------------GSGPL 180
            PSWNIAS++KILW +L NS SLWV WVEAYILKGRSLW VDS             G    
Sbjct: 1134 PSWNIASTLKILWLMLTNSGSLWVAWVEAYILKGRSLWDVDSRVGRSWCLWAILRGCHSR 1193

Query: 181  AGLLWDGGNVPKHSFCTW---------LAIKD-RLSMRDRLSRWDSSVSLSCI------- 224
            A  +W    V       W         L++ D R+ +R R   +  S +   I       
Sbjct: 1194 ADGVWLWPRVSLELIDLWERVQEVSPCLSVSDSRVWVRGRQGGFSISSAWEAIRPRGGRV 1253

[Close]

BLAST of Cmc08g0232651 vs. NCBI nr
Match: KAA0057642.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 239.2 bits (609), Expect = 3.4e-59
Identity = 146/323 (45.20%), Postives = 163/323 (50.46%), Query Frame = 0


Query: 1   MGFVLRQLPVRYLGLPLLSGRLCPTNFAPFIQRITSRICLWAIRVLSFAGRLQLVDKIPR 60
           MGFV   LPVRYLGLPLL+GRL   +  P IQRITSRI   + RVLSFAGRLQLV  +  
Sbjct: 637 MGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLC 696

Query: 61  SYLWKGKEDGKGGVKVAWEEV-CLPF----EEGGLAISDRPSWNIASSMKILWSLLVNSC 120
           S            ++V W  V  LP     EEGGL I D  +W  AS++KILW +L NS 
Sbjct: 697 S------------LQVYWAIVFVLPAYVHNEEGGLGIRDGTAWKFASTLKILWLMLTNSG 756

Query: 121 SLWVTWVEAYILKGRSLWAVDS--------------------------GSGPLA------ 180
           SLWV WVEAY+LKGRSLW VDS                          G+G         
Sbjct: 757 SLWVAWVEAYVLKGRSLWDVDSRVGRSWCLRAILRKQEKLKQHVRMKVGNGNRCRVWLDP 816

Query: 181 ------------------------------------------------------------ 224
                                                                       
Sbjct: 817 WLQRGAILEQVGERVLYDAASRREASLSNFIGPDGEWLWPRGGFSIASAWEAIRPRGGRV 876

[Close]

BLAST of Cmc08g0232651 vs. NCBI nr
Match: TYK19523.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 239.2 bits (609), Expect = 3.4e-59
Identity = 146/323 (45.20%), Postives = 163/323 (50.46%), Query Frame = 0


Query: 1   MGFVLRQLPVRYLGLPLLSGRLCPTNFAPFIQRITSRICLWAIRVLSFAGRLQLVDKIPR 60
           MGFV   LPVRYLGLPLL+GRL   +  P IQRITSRI   + RVLSFAGRLQLV  +  
Sbjct: 618 MGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLC 677

Query: 61  SYLWKGKEDGKGGVKVAWEEV-CLPF----EEGGLAISDRPSWNIASSMKILWSLLVNSC 120
           S            ++V W  V  LP     EEGGL I D  +W  AS++KILW +L NS 
Sbjct: 678 S------------LQVYWAIVFVLPAYVHNEEGGLGIRDGTAWKFASTLKILWLMLTNSG 737

Query: 121 SLWVTWVEAYILKGRSLWAVDS--------------------------GSGPLA------ 180
           SLWV WVEAY+LKGRSLW VDS                          G+G         
Sbjct: 738 SLWVAWVEAYVLKGRSLWDVDSRVGRSWCLRAILRKQEKLKQHVRMKVGNGNRCRVWLDP 797

Query: 181 ------------------------------------------------------------ 224
                                                                       
Sbjct: 798 WLQRGAILERVGERVLYDAASRREASLSNFIGPDGEWLWPRGGFSIASAWEAIRPRGGRV 857

[Close]

BLAST of Cmc08g0232651 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.1e-11
Identity = 45/153 (29.41%), Postives = 67/153 (43.79%), Query Frame = 0


Query: 15  LPLLSGRLCPTNFAPFIQRITSRICLWAIRVLSFAGRLQL-------------------- 74
           +P+L  R+    F   ++R++SR+  W  + LSFAGRL L                    
Sbjct: 1   MPVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQ 60

Query: 75  -----VDKIPRSYLWKGKEDGKGGVKVAWEEVCLPFEEGGLAISDRPSWNIASSMKILWS 134
                +D++ R++LW    + K    V W +VC P +EGGL +    S N A   K+ W 
Sbjct: 61  SILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWR 120

Query: 135 LLVNSCSLWVTWVEAYILKGR---SLWAVDSGS 140
           LL    SLW   ++     G    S W +  GS
Sbjct: 121 LLQEKNSLWTLVLQKKYHVGEIRDSRWLIPKGS 153

[Close]

BLAST of Cmc08g0232651 vs. ExPASy TrEMBL
Match: A0A5A7TZS0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19358G00020 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 5.0e-64
Identity = 146/321 (45.48%), Postives = 162/321 (50.47%), Query Frame = 0


Query: 28   APFIQRITSRICLWAIRVLSFAGRLQL-------------------------VDKIPRSY 87
            AP IQRITSRI  W  RVLSFAGRLQL                         VDKI RSY
Sbjct: 735  APLIQRITSRIRSWTARVLSFAGRLQLVRSVLRSLQVYWASVFVLPAYVHNEVDKILRSY 794

Query: 88   LWKGKEDGKGGVKVAWEEVCLPFEEGGLAISDRPSWNIASSMKILWSLLVNSCSLWVTWV 147
            LW+GKE+G+GG+KVAW +VCLPFEEGGL I D PSWNIA+++KI   LL N  SLWV W+
Sbjct: 795  LWRGKEEGRGGIKVAWVDVCLPFEEGGLGIRDGPSWNIANTLKI---LLTNLGSLWVAWM 854

Query: 148  EAYILKGRSLWAVDS--------------------------------------------- 207
            EAYILKG+SLW VDS                                             
Sbjct: 855  EAYILKGKSLWDVDSRVGRSWCLRAILRKREKMKHHVGERVLYDAASRREAKLSDFIDPN 914

Query: 208  ---------------------------------------GSGPLA--------------- 224
                                                   G   +A               
Sbjct: 915  GEWLWPRVSLELIDLWERVQEVSPCLSVSDSWVWVPGRQGGFSIASAWEAICPRGGRVLW 974

[Close]

BLAST of Cmc08g0232651 vs. ExPASy TrEMBL
Match: A0A5D3DXE4 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1467G00020 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 2.0e-60
Identity = 141/278 (50.72%), Postives = 163/278 (58.63%), Query Frame = 0


Query: 1    MGFVLRQLPVRYLGLPLLSGRLCPTNFAPFIQRITSRICLWAIRVLSFAGRLQL------ 60
            MGF    LPVRYLGLPLL+GRL   + AP IQRITS+I  W  RVLSFAGRLQL      
Sbjct: 1014 MGFARGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSQIRSWNARVLSFAGRLQLVRSVLR 1073

Query: 61   -------------------VDKIPRSYLWKGKEDGKGGVKVAWEEVCLPFEEGGLAISDR 120
                               VDKI RSYLW+GKE+G+GG+KVAW +VCLPFEEGG  I D 
Sbjct: 1074 SLQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVCLPFEEGGFGIRDG 1133

Query: 121  PSWNIASSMKILWSLLVNSCSLWVTWVEAYILKGRSLWAVDS-------------GSGPL 180
            PSWNIAS++KILW +L NS SLWV WVEAYILKGRSLW VDS             G    
Sbjct: 1134 PSWNIASTLKILWLMLTNSGSLWVAWVEAYILKGRSLWDVDSRVGRSWCLWAILRGCHSR 1193

Query: 181  AGLLWDGGNVPKHSFCTW---------LAIKD-RLSMRDRLSRWDSSVSLSCI------- 224
            A  +W    V       W         L++ D R+ +R R   +  S +   I       
Sbjct: 1194 ADGVWLWPRVSLELIDLWERVQEVSPCLSVSDSRVWVRGRQGGFSISSAWEAIRPRGGRV 1253

[Close]

BLAST of Cmc08g0232651 vs. ExPASy TrEMBL
Match: A0A5A7UP65 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00070 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.7e-59
Identity = 146/323 (45.20%), Postives = 163/323 (50.46%), Query Frame = 0


Query: 1   MGFVLRQLPVRYLGLPLLSGRLCPTNFAPFIQRITSRICLWAIRVLSFAGRLQLVDKIPR 60
           MGFV   LPVRYLGLPLL+GRL   +  P IQRITSRI   + RVLSFAGRLQLV  +  
Sbjct: 637 MGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLC 696

Query: 61  SYLWKGKEDGKGGVKVAWEEV-CLPF----EEGGLAISDRPSWNIASSMKILWSLLVNSC 120
           S            ++V W  V  LP     EEGGL I D  +W  AS++KILW +L NS 
Sbjct: 697 S------------LQVYWAIVFVLPAYVHNEEGGLGIRDGTAWKFASTLKILWLMLTNSG 756

Query: 121 SLWVTWVEAYILKGRSLWAVDS--------------------------GSGPLA------ 180
           SLWV WVEAY+LKGRSLW VDS                          G+G         
Sbjct: 757 SLWVAWVEAYVLKGRSLWDVDSRVGRSWCLRAILRKQEKLKQHVRMKVGNGNRCRVWLDP 816

Query: 181 ------------------------------------------------------------ 224
                                                                       
Sbjct: 817 WLQRGAILEQVGERVLYDAASRREASLSNFIGPDGEWLWPRGGFSIASAWEAIRPRGGRV 876

[Close]

BLAST of Cmc08g0232651 vs. ExPASy TrEMBL
Match: A0A5D3D7P6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00080 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.7e-59
Identity = 146/323 (45.20%), Postives = 163/323 (50.46%), Query Frame = 0


Query: 1   MGFVLRQLPVRYLGLPLLSGRLCPTNFAPFIQRITSRICLWAIRVLSFAGRLQLVDKIPR 60
           MGFV   LPVRYLGLPLL+GRL   +  P IQRITSRI   + RVLSFAGRLQLV  +  
Sbjct: 618 MGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLC 677

Query: 61  SYLWKGKEDGKGGVKVAWEEV-CLPF----EEGGLAISDRPSWNIASSMKILWSLLVNSC 120
           S            ++V W  V  LP     EEGGL I D  +W  AS++KILW +L NS 
Sbjct: 678 S------------LQVYWAIVFVLPAYVHNEEGGLGIRDGTAWKFASTLKILWLMLTNSG 737

Query: 121 SLWVTWVEAYILKGRSLWAVDS--------------------------GSGPLA------ 180
           SLWV WVEAY+LKGRSLW VDS                          G+G         
Sbjct: 738 SLWVAWVEAYVLKGRSLWDVDSRVGRSWCLRAILRKQEKLKQHVRMKVGNGNRCRVWLDP 797

Query: 181 ------------------------------------------------------------ 224
                                                                       
Sbjct: 798 WLQRGAILERVGERVLYDAASRREASLSNFIGPDGEWLWPRGGFSIASAWEAIRPRGGRV 857

[Close]

BLAST of Cmc08g0232651 vs. ExPASy TrEMBL
Match: A0A1S3BSI8 (uncharacterized protein LOC103493225 OS=Cucumis melo OX=3656 GN=LOC103493225 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 3.7e-59
Identity = 145/322 (45.03%), Postives = 162/322 (50.31%), Query Frame = 0


Query: 1   MGFVLRQLPVRYLGLPLLSGRLCPTNFAPFIQRITSRICLWAIRVLSFAGRLQLVDKIPR 60
           MGFV   LPVRYLGLPLL+GRL   +  P IQRITSRI   + RVLSFAGRLQLV  +  
Sbjct: 571 MGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLC 630

Query: 61  SYLWKGKEDGKGGVKVAWEEV-CLP---FEEGGLAISDRPSWNIASSMKILWSLLVNSCS 120
           S            ++V W  V  LP     EGGL I D  +W  AS++KILW +L NS S
Sbjct: 631 S------------LQVYWAIVFVLPAYVHNEGGLGIRDGTAWKFASTLKILWLMLTNSGS 690

Query: 121 LWVTWVEAYILKGRSLWAVDS--------------------------GSGPLA------- 180
           LWV WVEAY+LKGRSLW VDS                          G+G          
Sbjct: 691 LWVAWVEAYVLKGRSLWDVDSRVGRSWCLRAILRKQEKLKQHVRMKVGNGNRCRVWLDPW 750

Query: 181 ------------------------------------------------------------ 224
                                                                       
Sbjct: 751 LQRGAILERVGERVLYDAASRREASLSNFIGPDGEWLWPRGGFSIASAWEAIRPRGGRVL 810

[Close]

BLAST of Cmc08g0232651 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-24
Identity = 88/332 (26.51%), Postives = 125/332 (37.65%), Query Frame = 0


Query: 3   FVLRQLPVRYLGLPLLSGRLCPTNFAPFIQRITSRICLWAIRVLSFAGRLQL-------- 62
           F    LPVRYLGLPLL+ ++  +++ P +++I  RI  W  R LSFAGRLQL        
Sbjct: 18  FASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSL 77

Query: 63  -----------------VDKIPRSYLWKGKEDGKGGVKVAWEEVCLPFEEGGLAISDRPS 122
                            +D I  S+LW G E      KVAW +VC P +EGGL I     
Sbjct: 78  TNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKE 137

Query: 123 ------WNIASSMKI---LWSLLVNSCSLWVTWVEAYILKG--RSLW------------- 182
                 W+I+ +  +   +W  ++   +L   +V+  I  G   S W             
Sbjct: 138 ANKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDV 197

Query: 183 -----AVDSG------------------------------------SGPLAG---LLWDG 208
                 +D G                                     G  +G   + W G
Sbjct: 198 TGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKG 257

[Close]

BLAST of Cmc08g0232651 vs. TAIR 10
Match: AT1G43730.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 72.4 bits (176), Expect = 5.2e-13
Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 146 LWDGGNVPKHSFCTWLAIKDRLSMRDRLSRWDSSVSLSCILCPGGVESRDHLFFSCPFGR 205
           +W   +VPKH+F  W+   +RL  RDRL  W  S+   C+LC    ESR HLFF CPF  
Sbjct: 155 VWFKNHVPKHAFICWVVAWNRLHTRDRLRSWGLSIPAVCLLCNSHDESRAHLFFECPFCG 214

Query: 206 VVW 209
            VW
Sbjct: 215 AVW 217

[Close]

BLAST of Cmc08g0232651 vs. TAIR 10
Match: AT4G04650.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 72.4 bits (176), Expect = 5.2e-13
Identity = 29/63 (46.03%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 146 LWDGGNVPKHSFCTWLAIKDRLSMRDRLSRWDSSVSLSCILCPGGVESRDHLFFSCPFGR 205
           +W   +VPKH+F  W+   +RL  RDRL  W  S+   C+LC    +SR HLFF C F  
Sbjct: 133 VWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSG 192

Query: 206 VVW 209
           VVW
Sbjct: 193 VVW 195

[Close]

BLAST of Cmc08g0232651 vs. TAIR 10
Match: AT1G60720.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 71.6 bits (174), Expect = 8.8e-13
Identity = 32/66 (48.48%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 143 AGLLWDGGNVPKHSFCTWLAIKDRLSMRDRLSRWDSSVSLSCILCPGGVESRDHLFFSCP 202
           A  +W  G VPKH+F  W++  DRL  R RL+ W    S  C LC    ESRDHL FSC 
Sbjct: 128 AKAVWFKGAVPKHAFNMWISQLDRLPTRQRLASWGHIQSFDCCLCTIETESRDHLLFSCE 187

Query: 203 FGRVVW 209
           F   VW
Sbjct: 188 FAAQVW 193

[Close]

BLAST of Cmc08g0232651 vs. TAIR 10
Match: AT5G18880.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 68.9 bits (167), Expect = 5.7e-12
Identity = 33/97 (34.02%), Postives = 48/97 (49.48%), Query Frame = 0


Query: 117 LWVTWVEAYI--LKGRSLW---AVDSGSGPLAGLLWDGGNVPKHSFCTWLAIKDRLSMRD 176
           LW     +Y+     R  W    V S + P A ++W    +P+ S  TW++  +RL  RD
Sbjct: 97  LWRNAAGSYLPSFSSRDTWEQIRVHSPTVPWAKVVWFKEYIPRFSLITWMSFLERLPTRD 156

Query: 177 RLSRWDSSVSLSCILCPGGVESRDHLFFSCPFGRVVW 209
           RL  W  ++  S +LC  G E+  HLFF C F   +W
Sbjct: 157 RLRGWGMNIPSSWVLCSNGDETHAHLFFECSFSLAIW 193

The following BLAST results are available for this feature:

BLAST of Cmc08g0232651 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737043.1	5.6e-70	44.29	uncharacterized protein LOC116402131 [Cucumis sativus]	[more]
KAA0046851.1	1.0e-63	45.48	uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]	[more]
TYK28099.1	4.1e-60	50.72	uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]	[more]
KAA0057642.1	3.4e-59	45.20	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK19523.1	3.4e-59	45.20	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0232651 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	2.1e-11	29.41	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of Cmc08g0232651 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZS0	5.0e-64	45.48	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3DXE4	2.0e-60	50.72	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7UP65	1.7e-59	45.20	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5D3D7P6	1.7e-59	45.20	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold41...	[more]
A0A1S3BSI8	3.7e-59	45.03	uncharacterized protein LOC103493225 OS=Cucumis melo OX=3656 GN=LOC103493225 PE=...	[more]

BLAST of Cmc08g0232651 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24255.1	1.7e-24	26.51	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT1G43730.1	5.2e-13	47.62	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT4G04650.1	5.2e-13	46.03	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT1G60720.1	8.8e-13	48.48	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT5G18880.1	5.7e-12	34.02	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 141..208 e-value: 1.1E-16 score: 61.3
None	No IPR available	PANTHER	PTHR33116:SF42	SUBFAMILY NOT NAMED	coord: 142..201
None	No IPR available	PANTHER	PTHR33116:SF42	SUBFAMILY NOT NAMED	coord: 40..131
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 142..201
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 40..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0232651.1	Cmc08g0232651.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity