Cmc08g0231281 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0231281
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr08: 27535196 .. 27536014 (+)
RNA-Seq Expression	Cmc08g0231281
Synteny	Cmc08g0231281

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCCATGTTATTAAGCTCCGGTCTATCTAATAATATGTGGGGAGAAGCCGTGTTGTCTGCGTATTTTGTTCTTAACAGGATTCCCCACAAAAGGCTAGACAAAACTCCTTACGAACTCTGGAAAGGACATGCACCAAAACTTTCATACTTGAAGGTCTGGGGATGCTTGGCTAAGGTACCATTTCCTGCATTGAAGAAATCTACGGTAGGGTCTAAAACCTTTGACTGTATATTTATCGAGTATGCTCAAAATAGTGTTGCATATAGGTTTATGTGTTTTAATGATAAAACTATAAACGAATCTAGAGATGCAGAATTCTTTGAGCATGTATTTCCGTTAAAGCAATCATTGTCTGCTCCTAGCCTATCTAAAAGAATGCATGATCCTGAAAACCCCTCAATCGTTAGTGAAACACCTGTTTCTGAAACTGTTAATACTTCAAACCTAAGATGTGAATTAGAACTTATGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTTGGTCCAGATTTCTTAAGCACTTTCATAGTGGAAAGGCGTGATGAAATTGATTGTAACTTCACAAACTTGTACTTAATAGATGAGGATCCTAAAACTTACCAAGAAGCGCTGAACTCTGTAGAGTCAAGTATGTGGAAAGAGGCCATTAAAAGTGAACTGGATTCACTGGTCATGAATCATACATGGGACCTAGTAGACCTTCCTATGGGAAATAAGCCAATTAGATGTAAGTGGATCTTCAAAAGAAAAACAAAACCAAATGGATCAATAGAAAGATACAAGACTAGATTAGTGGTAGTAGGGTATACCTAG

mRNA sequence

ATGAATGCCATGTTATTAAGCTCCGGTCTATCTAATAATATGTGGGGAGAAGCCGTGTTGTCTGCGTATTTTGTTCTTAACAGGATTCCCCACAAAAGGCTAGACAAAACTCCTTACGAACTCTGGAAAGGACATGCACCAAAACTTTCATACTTGAAGGTCTGGGGATGCTTGGCTAAGGTACCATTTCCTGCATTGAAGAAATCTACGGTAGGGTCTAAAACCTTTGACTGTATATTTATCGAGTATGCTCAAAATAGTGTTGCATATAGGTTTATGTGTTTTAATGATAAAACTATAAACGAATCTAGAGATGCAGAATTCTTTGAGCATGTATTTCCGTTAAAGCAATCATTGTCTGCTCCTAGCCTATCTAAAAGAATGCATGATCCTGAAAACCCCTCAATCGTTAGTGAAACACCTGTTTCTGAAACTGTTAATACTTCAAACCTAAGATGTGAATTAGAACTTATGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTTGGTCCAGATTTCTTAAGCACTTTCATAGTGGAAAGGCGTGATGAAATTGATTGTAACTTCACAAACTTGTACTTAATAGATGAGGATCCTAAAACTTACCAAGAAGCGCTGAACTCTGTAGAGTCAAGTATGTGGAAAGAGGCCATTAAAAGTGAACTGGATTCACTGGTCATGAATCATACATGGGACCTAGTAGACCTTCCTATGGGAAATAAGCCAATTAGATGTAAGTGGATCTTCAAAAGAAAAACAAAACCAAATGGATCAATAGAAAGATACAAGACTAGATTAGTGGTAGTAGGGTATACCTAG

Coding sequence (CDS)

ATGAATGCCATGTTATTAAGCTCCGGTCTATCTAATAATATGTGGGGAGAAGCCGTGTTGTCTGCGTATTTTGTTCTTAACAGGATTCCCCACAAAAGGCTAGACAAAACTCCTTACGAACTCTGGAAAGGACATGCACCAAAACTTTCATACTTGAAGGTCTGGGGATGCTTGGCTAAGGTACCATTTCCTGCATTGAAGAAATCTACGGTAGGGTCTAAAACCTTTGACTGTATATTTATCGAGTATGCTCAAAATAGTGTTGCATATAGGTTTATGTGTTTTAATGATAAAACTATAAACGAATCTAGAGATGCAGAATTCTTTGAGCATGTATTTCCGTTAAAGCAATCATTGTCTGCTCCTAGCCTATCTAAAAGAATGCATGATCCTGAAAACCCCTCAATCGTTAGTGAAACACCTGTTTCTGAAACTGTTAATACTTCAAACCTAAGATGTGAATTAGAACTTATGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTTGGTCCAGATTTCTTAAGCACTTTCATAGTGGAAAGGCGTGATGAAATTGATTGTAACTTCACAAACTTGTACTTAATAGATGAGGATCCTAAAACTTACCAAGAAGCGCTGAACTCTGTAGAGTCAAGTATGTGGAAAGAGGCCATTAAAAGTGAACTGGATTCACTGGTCATGAATCATACATGGGACCTAGTAGACCTTCCTATGGGAAATAAGCCAATTAGATGTAAGTGGATCTTCAAAAGAAAAACAAAACCAAATGGATCAATAGAAAGATACAAGACTAGATTAGTGGTAGTAGGGTATACCTAG

Protein sequence

MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLDKTPYELWKGHAPKLSYLKVWGCLAKVPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSLSAPSLSKRMHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKTRLVVVGYT

Homology

[Close]

BLAST of Cmc08g0231281 vs. NCBI nr
Match: TYJ97996.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 558.9 bits (1439), Expect = 2.4e-155
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0


Query: 1   MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLDKTPYELWKGHAPKLSYLKVWGCLAK 60
           MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLDKTPYELWKGHAPKLSYLKVWGCLAK
Sbjct: 223 MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLDKTPYELWKGHAPKLSYLKVWGCLAK 282

Query: 61  VPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSLS 120
           VPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSLS
Sbjct: 283 VPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSLS 342

Query: 121 APSLSKRMHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVE 180
           APSLSKRMHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVE
Sbjct: 343 APSLSKRMHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVE 402

Query: 181 RRDEIDCNFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGN 240
           RRDEIDCNFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGN
Sbjct: 403 RRDEIDCNFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGN 462

Query: 241 KPIRCKWIFKRKTKPNGSIERYKTRLVVVGYT 273
           KPIRCKWIFKRKTKPNGSIERYKTRLVVVGYT
Sbjct: 463 KPIRCKWIFKRKTKPNGSIERYKTRLVVVGYT 494

[Close]

BLAST of Cmc08g0231281 vs. NCBI nr
Match: KAA0038001.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 512.3 bits (1318), Expect = 2.6e-141
Identity = 252/272 (92.65%), Postives = 256/272 (94.12%), Query Frame = 0


Query: 1   MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLDKTPYELWKGHAPKLSYLKVWGCLAK 60
           MNAMLLSSGLS+N+WGE VLSA FVLNRIPHKRLDKTPYELWKGHAP LSYLKVWGCLAK
Sbjct: 367 MNAMLLSSGLSDNIWGEVVLSACFVLNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAK 426

Query: 61  VPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSLS 120
           VPFPALKKSTVGSKTFDCIFI YAQNSVAYRFMC NDKTINESRDAEFFEHVF LKQSL 
Sbjct: 427 VPFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFSLKQSLY 486

Query: 121 APSLSKRMHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVE 180
           APSLSKRMHDPEN SIVSET VSE VNTSNLRCELEL RSKRQRTEKSF PDFLSTFIVE
Sbjct: 487 APSLSKRMHDPENTSIVSETHVSEIVNTSNLRCELELRRSKRQRTEKSFSPDFLSTFIVE 546

Query: 181 RRDEIDCNFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGN 240
           RRDEID NFTNLYLIDEDPKTYQE LNSVE SMWKEAIKSELDSLVMNHTWDLVDLPMGN
Sbjct: 547 RRDEIDFNFTNLYLIDEDPKTYQETLNSVELSMWKEAIKSELDSLVMNHTWDLVDLPMGN 606

Query: 241 KPIRCKWIFKRKTKPNGSIERYKTRLVVVGYT 273
           KPIRC+WIFKRKTKPNGS+ERYK RLVVVGYT
Sbjct: 607 KPIRCRWIFKRKTKPNGSMERYKARLVVVGYT 638

[Close]

BLAST of Cmc08g0231281 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 498.0 bits (1281), Expect = 5.0e-137
Identity = 244/272 (89.71%), Postives = 251/272 (92.28%), Query Frame = 0


Query: 1   MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLDKTPYELWKGHAPKLSYLKVWGCLAK 60
           MNAMLLSSGLS+NMWGEAVLSA F+LNRIPHKRLDKTPYELWKGHAP LSYLKVWGCLAK
Sbjct: 639 MNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAK 698

Query: 61  VPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSLS 120
           VP PALKK+TVG KTFDCIFI YAQNS AYRFMC NDKTINESRDAEFFEHVFPLKQSL 
Sbjct: 699 VPLPALKKTTVGPKTFDCIFIGYAQNSAAYRFMCLNDKTINESRDAEFFEHVFPLKQSLY 758

Query: 121 APSLSKRMHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVE 180
           APSLS RMHDPE   IVSE PVSETV+T NL CELE  RSKRQRTEKSFGPDFLSTFIVE
Sbjct: 759 APSLSNRMHDPE---IVSEIPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVE 818

Query: 181 RRDEIDCNFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGN 240
           RRDEIDCNFTNL+LIDEDPKTYQEALNSV+S MWKEAIKSELDSL MNHTW+LVDLPMGN
Sbjct: 819 RRDEIDCNFTNLFLIDEDPKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGN 878

Query: 241 KPIRCKWIFKRKTKPNGSIERYKTRLVVVGYT 273
           KPIRCKWIFKRKTKPNG IERYK RLVVVGYT
Sbjct: 879 KPIRCKWIFKRKTKPNGLIERYKARLVVVGYT 907

[Close]

BLAST of Cmc08g0231281 vs. NCBI nr
Match: KAA0036643.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 490.7 bits (1262), Expect = 8.0e-135
Identity = 241/272 (88.60%), Postives = 249/272 (91.54%), Query Frame = 0


Query: 1   MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLDKTPYELWKGHAPKLSYLKVWGCLAK 60
           MNAMLLSSGLS+NMWGEAVLSA F+LNRIPHKRLDKTPYELWKGHAP LSYLKVWGCLAK
Sbjct: 639 MNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAK 698

Query: 61  VPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSLS 120
           VP PALKK+TVG KTFDCIFI YAQNS AYRFMC NDKTINESRDAEFFEHVFPLKQSL 
Sbjct: 699 VPLPALKKTTVGPKTFDCIFIGYAQNSAAYRFMCLNDKTINESRDAEFFEHVFPLKQSLY 758

Query: 121 APSLSKRMHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVE 180
           APSLS RMHDPE   IVSE PVSE V+T NL CELE  RSKRQRTEKSFGPDFLSTFIVE
Sbjct: 759 APSLSNRMHDPE---IVSEIPVSEIVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVE 818

Query: 181 RRDEIDCNFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGN 240
           RRDEIDCNFTNL+LI+ED KTYQEALNSV+S MWKEAIKSELDSL MNHTW+LVDLPMGN
Sbjct: 819 RRDEIDCNFTNLFLINEDSKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGN 878

Query: 241 KPIRCKWIFKRKTKPNGSIERYKTRLVVVGYT 273
           KPIRCKWIFKRKTKPNG IERYK RLVVVGYT
Sbjct: 879 KPIRCKWIFKRKTKPNGLIERYKARLVVVGYT 907

[Close]

BLAST of Cmc08g0231281 vs. NCBI nr
Match: TYK12176.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 461.5 bits (1186), Expect = 5.2e-126
Identity = 224/246 (91.06%), Postives = 234/246 (95.12%), Query Frame = 0


Query: 1   MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLDKTPYELWKGHAPKLSYLKVWGCLAK 60
           MNAMLL+SGLS+NMWGE VLSA F+LNRIPHKRL+KTPYELWK HA  LSYLKVWGCLAK
Sbjct: 357 MNAMLLNSGLSDNMWGEVVLSACFILNRIPHKRLNKTPYELWKEHALNLSYLKVWGCLAK 416

Query: 61  VPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSLS 120
           VPFPALKK+T+GSKTFDCIFI Y QNS AYRFMC NDKTINESRDAEFFEHVFPLKQSL 
Sbjct: 417 VPFPALKKTTIGSKTFDCIFIGYVQNSAAYRFMCLNDKTINESRDAEFFEHVFPLKQSLY 476

Query: 121 APSLSKRMHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVE 180
           APSLSKRMHDPENPSIVSETPVSETV+TSNLRCELEL RSKRQRTEKSFG DFLSTFIVE
Sbjct: 477 APSLSKRMHDPENPSIVSETPVSETVDTSNLRCELELRRSKRQRTEKSFGLDFLSTFIVE 536

Query: 181 RRDEIDCNFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGN 240
           +RDEIDCNFTNLYLIDEDPKTYQEALNSV+SSMWKEAIKSELDSLVMNHTW+LVDLPMGN
Sbjct: 537 KRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGN 596

Query: 241 KPIRCK 247
           KPIRCK
Sbjct: 597 KPIRCK 602

[Close]

BLAST of Cmc08g0231281 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-23
Identity = 83/293 (28.33%), Postives = 136/293 (46.42%), Query Frame = 0


Query: 1   MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLD-KTPYELWKGHAPKLSYLKVWGCLA 60
           + +ML  + L  + WGEAV +A +++NR P   L  + P  +W       S+LKV+GC A
Sbjct: 596 VRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRA 655

Query: 61  KVPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSL 120
               P  +++ +  K+  CIFI Y      YR      K +  SRD  F E      +  
Sbjct: 656 FAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRE-----SEVR 715

Query: 121 SAPSLSKRMHDPENPSIV-----SETPVSETVNTSNLRCELE-----------LMRSKRQ 180
           +A  +S+++ +   P+ V     S  P S    T  +  + E           L     +
Sbjct: 716 TAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEE 775

Query: 181 RTEKSFGPDFLSTFIVERRDEIDCN---FTNLYLI--DEDPKTYQEALNSVESSMWKEAI 240
               + G +         R  ++      T   LI  D +P++ +E L+  E +   +A+
Sbjct: 776 VEHPTQGEEQHQPLRRSERPRVESRRYPSTEYVLISDDREPESLKEVLSHPEKNQLMKAM 835

Query: 241 KSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKTRLVVVGY 272
           + E++SL  N T+ LV+LP G +P++CKW+FK K   +  + RYK RLVV G+
Sbjct: 836 QEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGF 883

[Close]

BLAST of Cmc08g0231281 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-14
Identity = 92/368 (25.00%), Postives = 149/368 (40.49%), Query Frame = 0


Query: 4   MLLSSGLSNNMWGEAVLSAYFVLNRIPHKRL---DKTPYELWKGHAPKLSYLKVWGCLAK 63
           M+  + L  + WGEAVL+A +++NRIP + L    KTPYE+W    P L +L+V+G    
Sbjct: 599 MVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVY 658

Query: 64  VPFPALKKSTVGSKTFDCIFIEYAQN------SVAYRFMCFNDKTINESR----DAEFFE 123
           V     K+     K+F  IF+ Y  N      +V  +F+   D  ++E+      A  FE
Sbjct: 659 VHIKN-KQGKFDDKSFKSIFVGYEPNGFKLWDAVNEKFIVARDVVVDETNMVNSRAVKFE 718

Query: 124 HVFPLKQSLSA-----PSLSKRMHDPENPS---------IVSETPVSETVNTSN------ 183
            VF LK S  +     P+ S+++   E P+          + ++  SE  N  N      
Sbjct: 719 TVF-LKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESENKNFPNDSRKII 778

Query: 184 --------LRCE-LELMR-------------SKRQRTE---------------------- 243
                     C+ ++ ++              KR+R +                      
Sbjct: 779 QTEFPNESKECDNIQFLKDSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEH 838

Query: 244 -KSFGPDFLS----TFIVERRDE----------------IDCNFTNLYLIDED-PKTYQE 273
            K  G D  +      I+ RR E                ++    N + I  D P ++ E
Sbjct: 839 LKEIGIDNPTKNDGIEIINRRSERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDE 898

[Close]

BLAST of Cmc08g0231281 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.9e-10
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 196  DEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPI-RCKWIFKRKTK 255
            + +P+T   A+ +++   W+ A+ SE+++ + NHTWDLV  P  +  I  C+WIF +K  
Sbjct: 953  ESEPRT---AIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYN 1012

Query: 256  PNGSIERYKTRLVVVGY 272
             +GS+ RYK RLV  GY
Sbjct: 1013 SDGSLNRYKARLVAKGY 1026

[Close]

BLAST of Cmc08g0231281 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.7e-10
Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 196  DEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPI-RCKWIFKRKTK 255
            + +P+T   A+ +++   W++A+ SE+++ + NHTWDLV  P  +  I  C+WIF +K  
Sbjct: 936  NSEPRT---AIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFN 995

Query: 256  PNGSIERYKTRLVVVGY 272
             +GS+ RYK RLV  GY
Sbjct: 996  SDGSLNRYKARLVAKGY 1009

[Close]

BLAST of Cmc08g0231281 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.7e-08
Identity = 28/77 (36.36%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 195 IDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTK 254
           I ++PK+    + +++   W +A++ ELD+L  N TW LV  P+    + CKW+FK K  
Sbjct: 24  IKKEPKS---VIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLH 83

Query: 255 PNGSIERYKTRLVVVGY 272
            +G+++R K RLV  G+
Sbjct: 84  SDGTLDRLKARLVAKGF 97

[Close]

BLAST of Cmc08g0231281 vs. ExPASy TrEMBL
Match: A0A5D3BFX4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00190 PE=4 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 1.2e-155
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0


Query: 1   MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLDKTPYELWKGHAPKLSYLKVWGCLAK 60
           MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLDKTPYELWKGHAPKLSYLKVWGCLAK
Sbjct: 223 MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLDKTPYELWKGHAPKLSYLKVWGCLAK 282

Query: 61  VPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSLS 120
           VPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSLS
Sbjct: 283 VPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSLS 342

Query: 121 APSLSKRMHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVE 180
           APSLSKRMHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVE
Sbjct: 343 APSLSKRMHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVE 402

Query: 181 RRDEIDCNFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGN 240
           RRDEIDCNFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGN
Sbjct: 403 RRDEIDCNFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGN 462

Query: 241 KPIRCKWIFKRKTKPNGSIERYKTRLVVVGYT 273
           KPIRCKWIFKRKTKPNGSIERYKTRLVVVGYT
Sbjct: 463 KPIRCKWIFKRKTKPNGSIERYKTRLVVVGYT 494

[Close]

BLAST of Cmc08g0231281 vs. ExPASy TrEMBL
Match: A0A5A7T8N6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001890 PE=4 SV=1)

HSP 1 Score: 512.3 bits (1318), Expect = 1.2e-141
Identity = 252/272 (92.65%), Postives = 256/272 (94.12%), Query Frame = 0


Query: 1   MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLDKTPYELWKGHAPKLSYLKVWGCLAK 60
           MNAMLLSSGLS+N+WGE VLSA FVLNRIPHKRLDKTPYELWKGHAP LSYLKVWGCLAK
Sbjct: 367 MNAMLLSSGLSDNIWGEVVLSACFVLNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAK 426

Query: 61  VPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSLS 120
           VPFPALKKSTVGSKTFDCIFI YAQNSVAYRFMC NDKTINESRDAEFFEHVF LKQSL 
Sbjct: 427 VPFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFSLKQSLY 486

Query: 121 APSLSKRMHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVE 180
           APSLSKRMHDPEN SIVSET VSE VNTSNLRCELEL RSKRQRTEKSF PDFLSTFIVE
Sbjct: 487 APSLSKRMHDPENTSIVSETHVSEIVNTSNLRCELELRRSKRQRTEKSFSPDFLSTFIVE 546

Query: 181 RRDEIDCNFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGN 240
           RRDEID NFTNLYLIDEDPKTYQE LNSVE SMWKEAIKSELDSLVMNHTWDLVDLPMGN
Sbjct: 547 RRDEIDFNFTNLYLIDEDPKTYQETLNSVELSMWKEAIKSELDSLVMNHTWDLVDLPMGN 606

Query: 241 KPIRCKWIFKRKTKPNGSIERYKTRLVVVGYT 273
           KPIRC+WIFKRKTKPNGS+ERYK RLVVVGYT
Sbjct: 607 KPIRCRWIFKRKTKPNGSMERYKARLVVVGYT 638

[Close]

BLAST of Cmc08g0231281 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 2.4e-137
Identity = 244/272 (89.71%), Postives = 251/272 (92.28%), Query Frame = 0


Query: 1   MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLDKTPYELWKGHAPKLSYLKVWGCLAK 60
           MNAMLLSSGLS+NMWGEAVLSA F+LNRIPHKRLDKTPYELWKGHAP LSYLKVWGCLAK
Sbjct: 639 MNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAK 698

Query: 61  VPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSLS 120
           VP PALKK+TVG KTFDCIFI YAQNS AYRFMC NDKTINESRDAEFFEHVFPLKQSL 
Sbjct: 699 VPLPALKKTTVGPKTFDCIFIGYAQNSAAYRFMCLNDKTINESRDAEFFEHVFPLKQSLY 758

Query: 121 APSLSKRMHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVE 180
           APSLS RMHDPE   IVSE PVSETV+T NL CELE  RSKRQRTEKSFGPDFLSTFIVE
Sbjct: 759 APSLSNRMHDPE---IVSEIPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVE 818

Query: 181 RRDEIDCNFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGN 240
           RRDEIDCNFTNL+LIDEDPKTYQEALNSV+S MWKEAIKSELDSL MNHTW+LVDLPMGN
Sbjct: 819 RRDEIDCNFTNLFLIDEDPKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGN 878

Query: 241 KPIRCKWIFKRKTKPNGSIERYKTRLVVVGYT 273
           KPIRCKWIFKRKTKPNG IERYK RLVVVGYT
Sbjct: 879 KPIRCKWIFKRKTKPNGLIERYKARLVVVGYT 907

[Close]

BLAST of Cmc08g0231281 vs. ExPASy TrEMBL
Match: A0A5A7T166 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00120 PE=4 SV=1)

HSP 1 Score: 490.7 bits (1262), Expect = 3.9e-135
Identity = 241/272 (88.60%), Postives = 249/272 (91.54%), Query Frame = 0


Query: 1   MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLDKTPYELWKGHAPKLSYLKVWGCLAK 60
           MNAMLLSSGLS+NMWGEAVLSA F+LNRIPHKRLDKTPYELWKGHAP LSYLKVWGCLAK
Sbjct: 639 MNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAK 698

Query: 61  VPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSLS 120
           VP PALKK+TVG KTFDCIFI YAQNS AYRFMC NDKTINESRDAEFFEHVFPLKQSL 
Sbjct: 699 VPLPALKKTTVGPKTFDCIFIGYAQNSAAYRFMCLNDKTINESRDAEFFEHVFPLKQSLY 758

Query: 121 APSLSKRMHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVE 180
           APSLS RMHDPE   IVSE PVSE V+T NL CELE  RSKRQRTEKSFGPDFLSTFIVE
Sbjct: 759 APSLSNRMHDPE---IVSEIPVSEIVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVE 818

Query: 181 RRDEIDCNFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGN 240
           RRDEIDCNFTNL+LI+ED KTYQEALNSV+S MWKEAIKSELDSL MNHTW+LVDLPMGN
Sbjct: 819 RRDEIDCNFTNLFLINEDSKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGN 878

Query: 241 KPIRCKWIFKRKTKPNGSIERYKTRLVVVGYT 273
           KPIRCKWIFKRKTKPNG IERYK RLVVVGYT
Sbjct: 879 KPIRCKWIFKRKTKPNGLIERYKARLVVVGYT 907

[Close]

BLAST of Cmc08g0231281 vs. ExPASy TrEMBL
Match: A0A5D3CP43 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001170 PE=4 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 2.5e-126
Identity = 224/246 (91.06%), Postives = 234/246 (95.12%), Query Frame = 0


Query: 1   MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLDKTPYELWKGHAPKLSYLKVWGCLAK 60
           MNAMLL+SGLS+NMWGE VLSA F+LNRIPHKRL+KTPYELWK HA  LSYLKVWGCLAK
Sbjct: 357 MNAMLLNSGLSDNMWGEVVLSACFILNRIPHKRLNKTPYELWKEHALNLSYLKVWGCLAK 416

Query: 61  VPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSLS 120
           VPFPALKK+T+GSKTFDCIFI Y QNS AYRFMC NDKTINESRDAEFFEHVFPLKQSL 
Sbjct: 417 VPFPALKKTTIGSKTFDCIFIGYVQNSAAYRFMCLNDKTINESRDAEFFEHVFPLKQSLY 476

Query: 121 APSLSKRMHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVE 180
           APSLSKRMHDPENPSIVSETPVSETV+TSNLRCELEL RSKRQRTEKSFG DFLSTFIVE
Sbjct: 477 APSLSKRMHDPENPSIVSETPVSETVDTSNLRCELELRRSKRQRTEKSFGLDFLSTFIVE 536

Query: 181 RRDEIDCNFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGN 240
           +RDEIDCNFTNLYLIDEDPKTYQEALNSV+SSMWKEAIKSELDSLVMNHTW+LVDLPMGN
Sbjct: 537 KRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGN 596

Query: 241 KPIRCK 247
           KPIRCK
Sbjct: 597 KPIRCK 602

[Close]

BLAST of Cmc08g0231281 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-13
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 197 EDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPN 256
           ++P TY EA    E  +W  A+  E+ ++   HTW++  LP   KPI CKW++K K   +
Sbjct: 84  KEPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 143

Query: 257 GSIERYKTRLVVVGYT 273
           G+IERYK RLV  GYT
Sbjct: 144 GTIERYKARLVAKGYT 156

[Close]

BLAST of Cmc08g0231281 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-09
Identity = 28/77 (36.36%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 195 IDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTK 254
           I ++PK+    + +++   W +A++ ELD+L  N TW LV  P+    + CKW+FK K  
Sbjct: 24  IKKEPKS---VIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLH 83

Query: 255 PNGSIERYKTRLVVVGY 272
            +G+++R K RLV  G+
Sbjct: 84  SDGTLDRLKARLVAKGF 97

The following BLAST results are available for this feature:

BLAST of Cmc08g0231281 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ97996.1	2.4e-155	100.00	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0038001.1	2.6e-141	92.65	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK06518.1	5.0e-137	89.71	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036643.1	8.0e-135	88.60	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK12176.1	5.2e-126	91.06	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0231281 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.0e-23	28.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.5e-14	25.00	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	2.9e-10	40.26	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.7e-10	40.26	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92520	2.7e-08	36.36	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc08g0231281 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BFX4	1.2e-155	100.00	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T8N6	1.2e-141	92.65	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3C5T2	2.4e-137	89.71	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T166	3.9e-135	88.60	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CP43	2.5e-126	91.06	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc08g0231281 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.3e-13	44.74	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.9e-09	36.36	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..55 e-value: 4.0E-6 score: 28.2
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 228..271 e-value: 2.5E-8 score: 33.8
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 197..270 coord: 3..132
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 10..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0231281.1	Cmc08g0231281.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding