Cmc08g0228931 (gene) Melon (Charmono) v1.1

Overview
NameCmc08g0228931
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
LocationCMiso1.1chr08: 23418119 .. 23418813 (-)
RNA-Seq ExpressionCmc08g0228931
SyntenyCmc08g0228931
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCTACCCATAAATGGCCTTTCCATCAACTTGACATTAAGAGTGCTTTTCTGCATAGTGATCTTCAAGAGGAAGTCTATATGGAGCAACCACCTGAGTTTGTTGCTCAAGGGGAGAGTGATAAAGTATGTCGCCTTCGAAAATCTTTGTATGGTTTGAAACAGAGTCCACGTGCAAGGTTTGGTAAGTTTAGTCAAGCTCTTGTACGCTTTGGTATGCAGAAAAGTACATCTGATCATTATGTTTTCTATCGCCGGTCTGATAATGGTATAGTTTTACTAGTTGTATATATTGATGATATTGTTATTACTGGAAATGATGATCAGGTATTTCGTCTCTCAAAACTTTCCTCCAGGGTCAATTTCATACGAAAGATTTGGTCCAATTGAAATATTTTTTTAGCATTGAAGTGATGAGAAGCAAGAAAGATATTTATTTGTTTCAACGAAAATACGTACTTGATTTGTTATTTGATAAAGGAAAATTAGGAGCCAAACCAAGTGGTACTCCAATGATGTCAAATCAGCAACTTGTTAAAGACGAACTATGTAAAGATCCTGAGAGATATAGGAGCTTAGTTGGGAAGTTGAACAACTTAACAATGACTCGACTAGGCATTGCTTATTTTGTAAGTGTGGTAAGTCAGTTCATGTCTTCCCCTACAGTGGATCATTGGGCTACAGTAGAGTAG

mRNA sequence

ATGGCTGCTACCCATAAATGGCCTTTCCATCAACTTGACATTAAGAGTGCTTTTCTGCATAGTGATCTTCAAGAGGAAGTCTATATGGAGCAACCACCTGAGTTTGTTGCTCAAGGGGAGAGTGATAAAGTATGTCGCCTTCGAAAATCTTTGTATGGTTTGAAACAGAGTCCACGTGCAAGGTTTGGTAAGTTTAGTCAAGCTCTTGTACGCTTTGGTATGCAGAAAAGTACATCTGATCATTATGTTTTCTATCGCCGGTCTGATAATGGTATTTCGTCTCTCAAAACTTTCCTCCAGGGTCAATTTCATACGAAAGATTTGGTCCAATTGAAATATTTTTTTAGCATTGAAGTGATGAGAAGCAAGAAAGATATTTATTTGTTTCAACGAAAATACGTACTTGATTTGTTATTTGATAAAGGAAAATTAGGAGCCAAACCAAGTGGTACTCCAATGATGTCAAATCAGCAACTTGTTAAAGACGAACTATGTAAAGATCCTGAGAGATATAGGAGCTTAGTTGGGAAGTTGAACAACTTAACAATGACTCGACTAGGCATTGCTTATTTTGTAAGTGTGGTAAGTCAGTTCATGTCTTCCCCTACAGTGGATCATTGGGCTACAGTAGAGTAG

Coding sequence (CDS)

ATGGCTGCTACCCATAAATGGCCTTTCCATCAACTTGACATTAAGAGTGCTTTTCTGCATAGTGATCTTCAAGAGGAAGTCTATATGGAGCAACCACCTGAGTTTGTTGCTCAAGGGGAGAGTGATAAAGTATGTCGCCTTCGAAAATCTTTGTATGGTTTGAAACAGAGTCCACGTGCAAGGTTTGGTAAGTTTAGTCAAGCTCTTGTACGCTTTGGTATGCAGAAAAGTACATCTGATCATTATGTTTTCTATCGCCGGTCTGATAATGGTATTTCGTCTCTCAAAACTTTCCTCCAGGGTCAATTTCATACGAAAGATTTGGTCCAATTGAAATATTTTTTTAGCATTGAAGTGATGAGAAGCAAGAAAGATATTTATTTGTTTCAACGAAAATACGTACTTGATTTGTTATTTGATAAAGGAAAATTAGGAGCCAAACCAAGTGGTACTCCAATGATGTCAAATCAGCAACTTGTTAAAGACGAACTATGTAAAGATCCTGAGAGATATAGGAGCTTAGTTGGGAAGTTGAACAACTTAACAATGACTCGACTAGGCATTGCTTATTTTGTAAGTGTGGTAAGTCAGTTCATGTCTTCCCCTACAGTGGATCATTGGGCTACAGTAGAGTAG

Protein sequence

MAATHKWPFHQLDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRARFGKFSQALVRFGMQKSTSDHYVFYRRSDNGISSLKTFLQGQFHTKDLVQLKYFFSIEVMRSKKDIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSNQQLVKDELCKDPERYRSLVGKLNNLTMTRLGIAYFVSVVSQFMSSPTVDHWATVE
Homology
BLAST of Cmc08g0228931 vs. NCBI nr
Match: KAA0041891.1 (putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 377.5 bits (968), Expect = 7.6e-101
Identity = 193/211 (91.47%), Postives = 193/211 (91.47%), Query Frame = 0

Query: 1   MAATHKWPFHQLDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRA 60
           MAATHKWPFHQLDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRA
Sbjct: 1   MAATHKWPFHQLDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRA 60

Query: 61  RFGKFSQALVRFGMQKSTSDHYVFYRRSDNGISSLKTFLQGQFHTKDLVQLKYFFSIEVM 120
           RFGKFSQALVRF                  GISSLKTFLQGQFHTKDLVQLKYFFSIEVM
Sbjct: 61  RFGKFSQALVRF------------------GISSLKTFLQGQFHTKDLVQLKYFFSIEVM 120

Query: 121 RSKKDIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSNQQLVKDELCKDPERYRSLVGKLNN 180
           RSKKDIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSNQQLVKDELCKDPERYRSLVGKLNN
Sbjct: 121 RSKKDIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSNQQLVKDELCKDPERYRSLVGKLNN 180

Query: 181 LTMTRLGIAYFVSVVSQFMSSPTVDHWATVE 212
           LTMTRLGIAYFVSVVSQFMSSPTVDHWATVE
Sbjct: 181 LTMTRLGIAYFVSVVSQFMSSPTVDHWATVE 193

BLAST of Cmc08g0228931 vs. NCBI nr
Match: XP_031744754.1 (uncharacterized protein LOC101212255 isoform X2 [Cucumis sativus])

HSP 1 Score: 338.6 bits (867), Expect = 3.9e-89
Identity = 181/232 (78.02%), Postives = 189/232 (81.47%), Query Frame = 0

Query: 1    MAATHKWPFHQLDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRA 60
            MAAT+KW  HQLDIK+AFLH DLQEEVYMEQPP FVAQGESDKVCRLRKSLYGLKQSPRA
Sbjct: 934  MAATNKWSLHQLDIKNAFLHGDLQEEVYMEQPPGFVAQGESDKVCRLRKSLYGLKQSPRA 993

Query: 61   RFGKFSQALVRFGMQKSTSDHYVFYRRSDN--------------------GISSLKTFLQ 120
             FGKFSQALV FGM+KSTSDH VFYRRS+                     GISSLKTFLQ
Sbjct: 994  WFGKFSQALVCFGMKKSTSDHSVFYRRSEKGIVLLVVYVDDIVITGNDALGISSLKTFLQ 1053

Query: 121  GQFHTKDLVQLKYFFSIEVMRSKKDIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSNQQLV 180
            GQF+TKDL QLKYF  IEVMRSKK IYL QRKYVLDLL + GKLGAKPSGTPMM NQQLV
Sbjct: 1054 GQFYTKDLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPSGTPMMPNQQLV 1113

Query: 181  KD-ELCKDPERYRSLVGKLNNLTMTRLGIAYFVSVVSQFMSSPTVDHWATVE 212
            K+ ELCKDPERYR LVGKLN LT+TR  IAY VSVVSQFMSSPTVDHWA VE
Sbjct: 1114 KEGELCKDPERYRRLVGKLNYLTVTRPDIAYSVSVVSQFMSSPTVDHWAAVE 1165

BLAST of Cmc08g0228931 vs. NCBI nr
Match: XP_031744758.1 (uncharacterized protein LOC101212255 isoform X5 [Cucumis sativus])

HSP 1 Score: 338.6 bits (867), Expect = 3.9e-89
Identity = 181/232 (78.02%), Postives = 189/232 (81.47%), Query Frame = 0

Query: 1   MAATHKWPFHQLDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRA 60
           MAAT+KW  HQLDIK+AFLH DLQEEVYMEQPP FVAQGESDKVCRLRKSLYGLKQSPRA
Sbjct: 557 MAATNKWSLHQLDIKNAFLHGDLQEEVYMEQPPGFVAQGESDKVCRLRKSLYGLKQSPRA 616

Query: 61  RFGKFSQALVRFGMQKSTSDHYVFYRRSDN--------------------GISSLKTFLQ 120
            FGKFSQALV FGM+KSTSDH VFYRRS+                     GISSLKTFLQ
Sbjct: 617 WFGKFSQALVCFGMKKSTSDHSVFYRRSEKGIVLLVVYVDDIVITGNDALGISSLKTFLQ 676

Query: 121 GQFHTKDLVQLKYFFSIEVMRSKKDIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSNQQLV 180
           GQF+TKDL QLKYF  IEVMRSKK IYL QRKYVLDLL + GKLGAKPSGTPMM NQQLV
Sbjct: 677 GQFYTKDLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPSGTPMMPNQQLV 736

Query: 181 KD-ELCKDPERYRSLVGKLNNLTMTRLGIAYFVSVVSQFMSSPTVDHWATVE 212
           K+ ELCKDPERYR LVGKLN LT+TR  IAY VSVVSQFMSSPTVDHWA VE
Sbjct: 737 KEGELCKDPERYRRLVGKLNYLTVTRPDIAYSVSVVSQFMSSPTVDHWAAVE 788

BLAST of Cmc08g0228931 vs. NCBI nr
Match: XP_031744753.1 (uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus])

HSP 1 Score: 338.6 bits (867), Expect = 3.9e-89
Identity = 181/232 (78.02%), Postives = 189/232 (81.47%), Query Frame = 0

Query: 1    MAATHKWPFHQLDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRA 60
            MAAT+KW  HQLDIK+AFLH DLQEEVYMEQPP FVAQGESDKVCRLRKSLYGLKQSPRA
Sbjct: 949  MAATNKWSLHQLDIKNAFLHGDLQEEVYMEQPPGFVAQGESDKVCRLRKSLYGLKQSPRA 1008

Query: 61   RFGKFSQALVRFGMQKSTSDHYVFYRRSDN--------------------GISSLKTFLQ 120
             FGKFSQALV FGM+KSTSDH VFYRRS+                     GISSLKTFLQ
Sbjct: 1009 WFGKFSQALVCFGMKKSTSDHSVFYRRSEKGIVLLVVYVDDIVITGNDALGISSLKTFLQ 1068

Query: 121  GQFHTKDLVQLKYFFSIEVMRSKKDIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSNQQLV 180
            GQF+TKDL QLKYF  IEVMRSKK IYL QRKYVLDLL + GKLGAKPSGTPMM NQQLV
Sbjct: 1069 GQFYTKDLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPSGTPMMPNQQLV 1128

Query: 181  KD-ELCKDPERYRSLVGKLNNLTMTRLGIAYFVSVVSQFMSSPTVDHWATVE 212
            K+ ELCKDPERYR LVGKLN LT+TR  IAY VSVVSQFMSSPTVDHWA VE
Sbjct: 1129 KEGELCKDPERYRRLVGKLNYLTVTRPDIAYSVSVVSQFMSSPTVDHWAAVE 1180

BLAST of Cmc08g0228931 vs. NCBI nr
Match: XP_031744755.1 (uncharacterized protein LOC101212255 isoform X3 [Cucumis sativus])

HSP 1 Score: 338.6 bits (867), Expect = 3.9e-89
Identity = 181/232 (78.02%), Postives = 189/232 (81.47%), Query Frame = 0

Query: 1    MAATHKWPFHQLDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRA 60
            MAAT+KW  HQLDIK+AFLH DLQEEVYMEQPP FVAQGESDKVCRLRKSLYGLKQSPRA
Sbjct: 901  MAATNKWSLHQLDIKNAFLHGDLQEEVYMEQPPGFVAQGESDKVCRLRKSLYGLKQSPRA 960

Query: 61   RFGKFSQALVRFGMQKSTSDHYVFYRRSDN--------------------GISSLKTFLQ 120
             FGKFSQALV FGM+KSTSDH VFYRRS+                     GISSLKTFLQ
Sbjct: 961  WFGKFSQALVCFGMKKSTSDHSVFYRRSEKGIVLLVVYVDDIVITGNDALGISSLKTFLQ 1020

Query: 121  GQFHTKDLVQLKYFFSIEVMRSKKDIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSNQQLV 180
            GQF+TKDL QLKYF  IEVMRSKK IYL QRKYVLDLL + GKLGAKPSGTPMM NQQLV
Sbjct: 1021 GQFYTKDLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPSGTPMMPNQQLV 1080

Query: 181  KD-ELCKDPERYRSLVGKLNNLTMTRLGIAYFVSVVSQFMSSPTVDHWATVE 212
            K+ ELCKDPERYR LVGKLN LT+TR  IAY VSVVSQFMSSPTVDHWA VE
Sbjct: 1081 KEGELCKDPERYRRLVGKLNYLTVTRPDIAYSVSVVSQFMSSPTVDHWAAVE 1132

BLAST of Cmc08g0228931 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.2e-34
Identity = 87/229 (37.99%), Postives = 117/229 (51.09%), Query Frame = 0

Query: 1    MAATHKWPFHQLDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRA 60
            +A    WP  QLD+ +AFL   L +EVYM QPP FV +   D VCRLRK++YGLKQ+PRA
Sbjct: 1036 VAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRA 1095

Query: 61   RFGKFSQALVRFGMQKSTSDHYVFYRRSDNGISSLKTF--------------------LQ 120
             + +    L+  G   S SD  +F  +    I  +  +                    L 
Sbjct: 1096 WYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALS 1155

Query: 121  GQFHTKDLVQLKYFFSIEVMRSKKDIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSNQQLV 180
             +F  K+   L YF  IE  R  + ++L QR+Y LDLL     L AKP  TPM ++ +L 
Sbjct: 1156 QRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLT 1215

Query: 181  KDELCK--DPERYRSLVGKLNNLTMTRLGIAYFVSVVSQFMSSPTVDHW 208
                 K  DP  YR +VG L  L  TR  ++Y V+ +SQ+M  PT DHW
Sbjct: 1216 LHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHW 1264

BLAST of Cmc08g0228931 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.5e-32
Identity = 83/228 (36.40%), Postives = 115/228 (50.44%), Query Frame = 0

Query: 1    MAATHKWPFHQLDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRA 60
            +A    WP  QLD+ +AFL   L ++VYM QPP F+ +   + VC+LRK+LYGLKQ+PRA
Sbjct: 1053 VAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRA 1112

Query: 61   RFGKFSQALVRFGMQKSTSDHYVFYRRSDNGISSLKTF--------------------LQ 120
             + +    L+  G   S SD  +F  +    I  +  +                    L 
Sbjct: 1113 WYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLS 1172

Query: 121  GQFHTKDLVQLKYFFSIEVMRSKKDIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSNQQ-- 180
             +F  KD  +L YF  IE  R    ++L QR+Y+LDLL     + AKP  TPM  + +  
Sbjct: 1173 QRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLS 1232

Query: 181  LVKDELCKDPERYRSLVGKLNNLTMTRLGIAYFVSVVSQFMSSPTVDH 207
            L       DP  YR +VG L  L  TR  I+Y V+ +SQFM  PT +H
Sbjct: 1233 LYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEH 1280

BLAST of Cmc08g0228931 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-25
Identity = 84/245 (34.29%), Postives = 122/245 (49.80%), Query Frame = 0

Query: 1    MAATHKWPFHQLDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRA 60
            +AA+      QLD+K+AFLH DL+EE+YMEQP  F   G+   VC+L KSLYGLKQ+PR 
Sbjct: 910  LAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQ 969

Query: 61   RFGKFSQALVRFGMQKSTSDHYVFYRR--------------------SDNG-ISSLKTFL 120
             + KF   +      K+ SD  V+++R                     D G I+ LK  L
Sbjct: 970  WYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDL 1029

Query: 121  QGQFHTKDLVQLKYFFSIEVMRSK--KDIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSNQ 180
               F  KDL   +    ++++R +  + ++L Q KY+  +L       AKP  TP+  + 
Sbjct: 1030 SKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHL 1089

Query: 181  QL----------VKDELCKDPERYRSLVGKL-NNLTMTRLGIAYFVSVVSQFMSSPTVDH 212
            +L           K  + K P  Y S VG L   +  TR  IA+ V VVS+F+ +P  +H
Sbjct: 1090 KLSKKMCPTTVEEKGNMAKVP--YSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEH 1149

BLAST of Cmc08g0228931 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-17
Identity = 68/228 (29.82%), Postives = 108/228 (47.37%), Query Frame = 0

Query: 10   HQLDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRARFGKFSQAL 69
            HQ+D+K+AFL+  L+EE+YM  P        SD VC+L K++YGLKQ+ R  F  F QAL
Sbjct: 999  HQMDVKTAFLNGTLKEEIYMRLPQGISC--NSDNVCKLNKAIYGLKQAARCWFEVFEQAL 1058

Query: 70   VRFGMQKSTSDHYVFYRRSDN----------------------GISSLKTFLQGQFHTKD 129
                   S+ D  ++     N                       +++ K +L  +F   D
Sbjct: 1059 KECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTD 1118

Query: 130  LVQLKYFFSIEVMRSKKDIYLFQRKYVLDLL--FDKGKLGAKPSGTPMMSNQQLV-KDEL 189
            L ++K+F  I +   +  IYL Q  YV  +L  F+     A  +  P   N +L+  DE 
Sbjct: 1119 LNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDED 1178

Query: 190  CKDPERYRSLVGKLNNLTM-TRLGIAYFVSVVSQFMSSPTVDHWATVE 212
            C  P   RSL+G L  + + TR  +   V+++S++ S    + W  ++
Sbjct: 1179 CNTP--CRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLK 1222

BLAST of Cmc08g0228931 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 5.3e-12
Identity = 58/219 (26.48%), Postives = 102/219 (46.58%), Query Frame = 0

Query: 12  LDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRARFGKFSQALVR 71
           +D+ +AFL+S + E +Y++QPP FV +   D V  L   +YGLKQ+P       +  L +
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 72  FGMQKSTSDHYVFYRRSDNG--------------------ISSLKTFLQGQFHTKDLVQL 131
            G  +   +H +++R + +G                       +K  L   +  KDL ++
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 132 KYFFSIEVMRSKK-DIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSNQQLVK--DELCKDP 191
             F  + + +S   DI L  + Y+     +      K + TP+ +++ L +      KD 
Sbjct: 121 DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180

Query: 192 ERYRSLVGKLNNLTMT-RLGIAYFVSVVSQFMSSPTVDH 207
             Y+S+VG+L     T R  I+Y VS++S+F+  P   H
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIH 219

BLAST of Cmc08g0228931 vs. ExPASy TrEMBL
Match: A0A5A7TK05 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G002880 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.7e-101
Identity = 193/211 (91.47%), Postives = 193/211 (91.47%), Query Frame = 0

Query: 1   MAATHKWPFHQLDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRA 60
           MAATHKWPFHQLDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRA
Sbjct: 1   MAATHKWPFHQLDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRA 60

Query: 61  RFGKFSQALVRFGMQKSTSDHYVFYRRSDNGISSLKTFLQGQFHTKDLVQLKYFFSIEVM 120
           RFGKFSQALVRF                  GISSLKTFLQGQFHTKDLVQLKYFFSIEVM
Sbjct: 61  RFGKFSQALVRF------------------GISSLKTFLQGQFHTKDLVQLKYFFSIEVM 120

Query: 121 RSKKDIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSNQQLVKDELCKDPERYRSLVGKLNN 180
           RSKKDIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSNQQLVKDELCKDPERYRSLVGKLNN
Sbjct: 121 RSKKDIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSNQQLVKDELCKDPERYRSLVGKLNN 180

Query: 181 LTMTRLGIAYFVSVVSQFMSSPTVDHWATVE 212
           LTMTRLGIAYFVSVVSQFMSSPTVDHWATVE
Sbjct: 181 LTMTRLGIAYFVSVVSQFMSSPTVDHWATVE 193

BLAST of Cmc08g0228931 vs. ExPASy TrEMBL
Match: A0A5D3C204 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001030 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.2e-86
Identity = 178/232 (76.72%), Postives = 184/232 (79.31%), Query Frame = 0

Query: 1   MAATHKWPFHQLDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRA 60
           MAATH W  HQLDIK+AFLHSDLQEEVYMEQPP FVAQ ESDKVC LRKSLYGLKQSPRA
Sbjct: 1   MAATHNWSLHQLDIKNAFLHSDLQEEVYMEQPPGFVAQEESDKVCCLRKSLYGLKQSPRA 60

Query: 61  RFGKFSQALVRFGMQKSTSDHYVFYRRSDN--------------------GISSLKTFLQ 120
            FGKFSQALVRFGMQ ST DH VFYRRSDN                    GISSLKTFLQ
Sbjct: 61  WFGKFSQALVRFGMQNSTYDHSVFYRRSDNGIVLLVVYVDDTVITGNDAWGISSLKTFLQ 120

Query: 121 GQFHTKDLVQLKYFFSIEVMRSKKDIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSNQQLV 180
           G FHTKD+ QLKYF  IEVMRSKK IYL QRKYVLDLL +  KLGAKPSGT MM NQQLV
Sbjct: 121 GHFHTKDMGQLKYFLGIEVMRSKKCIYLSQRKYVLDLLSETEKLGAKPSGTLMMPNQQLV 180

Query: 181 KD-ELCKDPERYRSLVGKLNNLTMTRLGIAYFVSVVSQFMSSPTVDHWATVE 212
           K+ +LCKDPERYR LVGKLN LTMT+  IAY VSVVSQFMSSPTVDHWA VE
Sbjct: 181 KEGKLCKDPERYRRLVGKLNYLTMTQPDIAYSVSVVSQFMSSPTVDHWAAVE 232

BLAST of Cmc08g0228931 vs. ExPASy TrEMBL
Match: Q6L3Q0 (Polyprotein, putative OS=Solanum demissum OX=50514 GN=SDM1_42t00018 PE=4 SV=2)

HSP 1 Score: 266.5 bits (680), Expect = 9.2e-68
Identity = 143/233 (61.37%), Postives = 164/233 (70.39%), Query Frame = 0

Query: 1    MAATHKWPFHQLDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRA 60
            +AA+  WP HQL IK+AFLH DLQEEVYMEQPP FVAQGE+ KVC L+K LYGLKQSPRA
Sbjct: 1010 LAASQNWPLHQLAIKNAFLHGDLQEEVYMEQPPGFVAQGENGKVCHLKKPLYGLKQSPRA 1069

Query: 61   RFGKFSQALVRFGMQKSTSDHYVFYR-------------------RSD-NGISSLKTFLQ 120
             FGKFS+ + +FG+ KS  DH VFYR                   RSD  GISSLK FL 
Sbjct: 1070 WFGKFSEVVQKFGLTKSNCDHSVFYRQSAVGIILLVVYVDDIVITRSDYAGISSLKLFLH 1129

Query: 121  GQFHTKDLVQLKYFFSIEVMRSKKDIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSNQQLV 180
              FHTKDL QLKYF  IEV RSKK I+L QRKY+LDLL + GK  AKP  TPM+ N QL 
Sbjct: 1130 SMFHTKDLGQLKYFLGIEVSRSKKGIFLSQRKYILDLLEETGKSAAKPCSTPMVPNTQLT 1189

Query: 181  KD--ELCKDPERYRSLVGKLNNLTMTRLGIAYFVSVVSQFMSSPTVDHWATVE 212
             D  +   DPERYR LVGKLN LT+TR  I++ VS+VSQFMS+PT+ HWA +E
Sbjct: 1190 NDDGDPFDDPERYRRLVGKLNYLTVTRPDISFAVSIVSQFMSTPTIKHWAALE 1242

BLAST of Cmc08g0228931 vs. ExPASy TrEMBL
Match: A0A438G5Y3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1743 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.7e-67
Identity = 141/233 (60.52%), Postives = 164/233 (70.39%), Query Frame = 0

Query: 1   MAATHKWPFHQLDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRA 60
           +AA+  WP HQ+DIK+AFLH DLQEEVYMEQPP FVAQGE  KVC LRKSLYGLKQSPRA
Sbjct: 366 IAASQHWPLHQVDIKNAFLHGDLQEEVYMEQPPGFVAQGEYGKVCHLRKSLYGLKQSPRA 425

Query: 61  RFGKFSQALVRFGMQKSTSDHYVFYRRSDN--------------------GISSLKTFLQ 120
            FGKFS+ +  FGM KS  DH VFYR+S N                    GISSLK F+ 
Sbjct: 426 WFGKFSEVIQEFGMNKSKVDHSVFYRQSANGIILLVVYIDDIVITGSDCAGISSLKLFMH 485

Query: 121 GQFHTKDLVQLKYFFSIEVMRSKKDIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSNQQLV 180
            +FHTKDL +LKYF  +EV RSK+ I+L QRKYVLDLL + GK+ AKP  T M+ N  L 
Sbjct: 486 SKFHTKDLGELKYFLGVEVSRSKRGIFLSQRKYVLDLLTEIGKMEAKPCSTSMIPNVHLT 545

Query: 181 KD--ELCKDPERYRSLVGKLNNLTMTRLGIAYFVSVVSQFMSSPTVDHWATVE 212
           KD  +   +PERY+ LVGKLN LT+TR  IAY VS+VSQFM +PTV HWA +E
Sbjct: 546 KDDGDQFDNPERYKRLVGKLNYLTVTRPDIAYAVSIVSQFMFAPTVKHWAALE 598

BLAST of Cmc08g0228931 vs. ExPASy TrEMBL
Match: A0A438CQ50 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1996 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.7e-67
Identity = 141/233 (60.52%), Postives = 164/233 (70.39%), Query Frame = 0

Query: 1   MAATHKWPFHQLDIKSAFLHSDLQEEVYMEQPPEFVAQGESDKVCRLRKSLYGLKQSPRA 60
           +AA+  WP  QLDIK+AFLH DLQ+EVYMEQPP FVAQGE  KVC LRKSLYGLKQSPRA
Sbjct: 366 IAASQHWPLLQLDIKNAFLHRDLQQEVYMEQPPRFVAQGEYGKVCHLRKSLYGLKQSPRA 425

Query: 61  RFGKFSQALVRFGMQKSTSDHYVFYRRSDN--------------------GISSLKTFLQ 120
            FGKFS+ +  FGM KS  DH VFYR+S N                    GISSLK F+ 
Sbjct: 426 WFGKFSEVIQEFGMNKSKVDHSVFYRQSANGNILLVVYVDDIVITGSDCAGISSLKLFMH 485

Query: 121 GQFHTKDLVQLKYFFSIEVMRSKKDIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSNQQLV 180
            +FHTKDL +LKYF  +EV RSK+ I+L QRKYVLDLL + GK+ AKP  TPM+ N  L 
Sbjct: 486 SKFHTKDLGELKYFLGVEVSRSKRGIFLSQRKYVLDLLVETGKMEAKPCSTPMIPNVHLT 545

Query: 181 KD--ELCKDPERYRSLVGKLNNLTMTRLGIAYFVSVVSQFMSSPTVDHWATVE 212
           KD  +   +PERY+ LVGKLN LT+T   IAY VS+VSQFMS+PTV HWA +E
Sbjct: 546 KDDGDPFDNPERYKRLVGKLNYLTVTLPDIAYVVSIVSQFMSAPTVKHWAALE 598

BLAST of Cmc08g0228931 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 148.3 bits (373), Expect = 7.0e-36
Identity = 93/236 (39.41%), Postives = 130/236 (55.08%), Query Frame = 0

Query: 1   MAATHKWPFHQLDIKSAFLHSDLQEEVYMEQPPEFVA-QGES---DKVCRLRKSLYGLKQ 60
           ++A + +  HQLDI +AFL+ DL EE+YM+ PP + A QG+S   + VC L+KS+YGLKQ
Sbjct: 182 ISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQ 241

Query: 61  SPRARFGKFSQALVRFGMQKSTSDHYVFYR--------------------RSDNGISSLK 120
           + R  F KFS  L+ FG  +S SDH  F +                     +D  +  LK
Sbjct: 242 ASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELK 301

Query: 121 TFLQGQFHTKDLVQLKYFFSIEVMRSKKDIYLFQRKYVLDLLFDKGKLGAKPSGTPMMSN 180
           + L+  F  +DL  LKYF  +E+ RS   I + QRKY LDLL + G LG KPS  PM  +
Sbjct: 302 SQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPS 361

Query: 181 QQLVKDE--LCKDPERYRSLVGKLNNLTMTRLGIAYFVSVVSQFMSSPTVDHWATV 211
                       D + YR L+G+L  L +TRL I++ V+ +SQF  +P + H   V
Sbjct: 362 VTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAV 417

BLAST of Cmc08g0228931 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 9.2e-12
Identity = 42/119 (35.29%), Postives = 61/119 (51.26%), Query Frame = 0

Query: 88  SDNGISSLKTF-LQGQFHTKDLVQLKYFFSIEVMRSKKDIYLFQRKYVLDLLFDKGKLGA 147
           S N + ++  F L   F  KDL  + YF  I++      ++L Q KY   +L + G L  
Sbjct: 15  SSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDC 74

Query: 148 KPSGTPM-MSNQQLVKDELCKDPERYRSLVGKLNNLTMTRLGIAYFVSVVSQFMSSPTV 205
           KP  TP+ +     V      DP  +RS+VG L  LT+TR  I+Y V++V Q M  PT+
Sbjct: 75  KPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTL 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0041891.17.6e-10191.47putative Polyprotein [Cucumis melo var. makuwa][more]
XP_031744754.13.9e-8978.02uncharacterized protein LOC101212255 isoform X2 [Cucumis sativus][more]
XP_031744758.13.9e-8978.02uncharacterized protein LOC101212255 isoform X5 [Cucumis sativus][more]
XP_031744753.13.9e-8978.02uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus][more]
XP_031744755.13.9e-8978.02uncharacterized protein LOC101212255 isoform X3 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Q9ZT942.2e-3437.99Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW23.5e-3236.40Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P109781.4e-2534.29Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041461.1e-1729.82Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P256005.3e-1226.48Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
Match NameE-valueIdentityDescription
A0A5A7TK053.7e-10191.47Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G... [more]
A0A5D3C2041.2e-8676.72Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
Q6L3Q09.2e-6861.37Polyprotein, putative OS=Solanum demissum OX=50514 GN=SDM1_42t00018 PE=4 SV=2[more]
A0A438G5Y32.7e-6760.52Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438CQ502.7e-6760.52Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
Match NameE-valueIdentityDescription
AT4G23160.17.0e-3639.41cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.19.2e-1235.29DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..87
e-value: 3.1E-24
score: 85.9
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..166
NoneNo IPR availablePANTHERPTHR11439:SF351CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8coord: 2..166
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 5..203

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc08g0228931.1Cmc08g0228931.1mRNA