Cmc08g0228571 (gene) Melon (Charmono) v1.1

Overview
NameCmc08g0228571
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionAnaphase-promoting complex subunit 4
LocationCMiso1.1chr08: 22802313 .. 22805406 (+)
RNA-Seq ExpressionCmc08g0228571
SyntenyCmc08g0228571
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCCTAAAACCCCCTTTCTCTCCGCTCTACACAAATGTCCCCTAATTTCTGGAAAACACTGATCCCCATTTTCGGTGACACACGGTAGCCTCGAACGACGATGGTTGATGGTGACCCACGGTGGCGATGGACGTTCGACGGCGAGCCACAGTGGCGAACGACGTCTGACGACGACCCACGACGCGAACGGATTAGCTACACTTGAACGGCTACACGCGAACGGAACGTCTGGCTGTGACCCTTTATGTTTAATTGCTTGAGAATTCTGGATTTCACATAAAAAAAACTTCTGTAATATATGTAACACTTCGAACTATGAGCGGGATGAAATGGTGACCTCCAGAATTGTACAACTTCTATGTAGGAAGGTCTATAAAATCGTTATGTTGGAGGCCTGATGGTAAGGTGATAGCAGTGGGACTTGAAGATGGCACAATTTTATTGCATGATGTTGAAGTGAGTAGCCTTACTTTAACTTTAAAACACAGTTTTGCTATTGATTAGTCAATTGTGGAATTCTTGCGCTCAATTATGGTGATCCAGACTCCTGCTAGTCCAGTTGTACTATAATTATTTAGATTCAGCTTCCAATGTGCCTAATATAGATTTAGTTCTCTTGCTGCTTTTTAGACCCTTTATTTTGTGTCTAACAGAATGGAAAGTTGTTGAGAAGCCTAAAGTCTCATGAAGTTGTGTGGTTAGTCTAAATTGGGTGGAAGATAGCCAGTTGATTACAGTAAGTAATTCTCCACTTATTCATTTGGTGTTTTCCATGAAGTTTATTGGAAAATCATTTTGCTAACCTCATCTAGAATGTGCAGCATGAATAATGATTTCCAAATATGGGTTTATGTTCTTATCCAAAAAAAATTTGTTTCCCTCTCATCCTTCACCTGTTTTCAAAATTGTGGTACAGGACAAAAATGAAATCTTGTCAACTTATGAAGATCGCACTCGCCGTATTTTCCCTCCTGCTCCTACAATTCCTCGAATGCCTGGACTTGTTTCTGGAGATACTGGTTGCATTGACGACTCTGAAGACTCATTTACGGAGTTGTCAAATTCTTCACATCAGCTGTTTAACATCTTGTGCAGTGGTGACAAAGAAGGAAGCATCTGTTTCAGCATATTTGGCGTTTTTCCAATTGGAAAAATAGTAAGTTAACTGCGATTATATTTATAACCACAACCTCAAACCTTTCTTCTCTCTTTTCAAAAAATAGGTACTTAACTGGTTCTTTGCTCGCTTCATCAGTATAGTTCTTGAATACATTGATTCACTTGTATGAAAATTCAATGTAGTATGTTAATTTCAAAATTGTATATTTCTATTTTGATTGTGATCGCTTCTTGAATACTCGGTGTATAAAGACCGAAACCTGACCCCTAGCTTTCCTATCCTCTGCTGGACGAAAAAGCTAGGGTTCAGGATTAGGTCTTGTACATTTCAAGTGATCAAAAAGTAACGTCAATCAGAACAAAATATACAGTTTTGAAATTAAAATACTACTTTAAATTGTATTACAGGAGAAACGAAATATTTTTATCAGTGTATTTGAGAACTATACTGATGAATGGAGCAAAGTTATGAGTTAGTAATAATTTTCCAAAGAGAGATAAGAAAGGTTAGTGGTTATATGCGTGTATAATTTCTCAATCCTAAAATTATCTGTTAAATAAAGGTTTTTGGTTCTGCAGGTGTGTTCTAGTTTTGATTTTGACATTGCTTTATTGCTTCTAATATATGTTGAAGTTATGATTTTTTCTTAGAGTGCAATGCATAGATTAATTAAATTTATATTAAACTTTTGATACTAAATCATGACGAAGGGCAATATTTCATCTGTCAAAAGACTATCTTTATGTTATTTAATGACAACTTAGTGATTCAACTTTTGGTGCAACACTAAAATTTAAATTCTTGCTTTGGACAATTTTAGTTCAACAAAACTTAATATGTCAACATCACAGCGATATTGTCACTTCCTCTTTAGACCTACGTGTTTTTCACTTTGTTATTGGGTTCTTACGTGTTACGTCGTTCGATGCACCCTTGGCTAGGAATGATTGTATCAACTTCAATATTTTTGGTTTCATATCAGATTGATACAAGGAATTTATACAGTCAACTCGAGTTGGATGAGGTGCGAATGGAGCTTGTTGATTTTTTGGTTGGCCACGTGATTATGGTGATAGCTAAGTTCTTTTGGGTCAGATGGACAATTTTTATTAATACTGGACATAGGTGAACTAGTTTTGTTGATATTTTGTTGATACTGGATATAGGTGAAAGACAAGTTTTGATATGGTACACCTTTAGGCTACATAGATGGAAAGTTTAAGCTATTATTAGAAGTTTAGGCTACTCGTATATATATATATATATATATATATATGTTGATATTTTGTTGATACTGGATATAGGTGAACTTCAAAACAGGTGCAAGATAAATTATATGGATAATTTAAAATATATAATTTTTCATTTGAAAAAAAAACTTAGACAAGTAAAAACTATAAAAAACAAAACTCCATTTATTCTTGACACCGGATTACTTGATGCATAAAAACTGTAAAAAAAGCTTATATACTTGATGCTTAAAAACTGTCAAGTAAACTTGTCTTATTACTTTTAATTTTCATGTCCGTAGAATTTTCAAATTAATTTGGATTTCTTTTGTAGCATATTTAGACATATCTCTCTATACGTGTGGTTTAGTTTTTCCATCTACTGTCATGAAATGCCTTAGTTTATCTTGTTTCTAACCGAAAGTCTATTTTTCTCTATCATACAGGCCCATACTCACTTTGTACATCTTTGACTAAGATCATCTTTACTACTTGGAAGATTACTGATATCGCATGGGAATTCTGTATCGCAGATGCAGTATGTCATAATTTAATTGGAAAAAACAACACCTTTCTATTTCTTGTGTACTGACTTGTGTTCTGTAAACATGTTGCTGTAGTTTACTTTAAACATGATCTTGAGTTTGAAGTGAGCTTTCTTCGTACATATATCTTTATACTTTGTTTCTATTTTTTTTTTCTCGCATCATCCTAACTTGTATTTGATATTTTTTCTCTATAGCTA

mRNA sequence

TGCCTAAAACCCCCTTTCTCTCCGCTCTACACAAATGTCCCCTAATTTCTGGAAAACACTGATCCCCATTTTCGGTGACACACGGTAGCCTCGAACGACGATGGTTGATGGTGACCCACGGTGGCGATGGACGTTCGACGGCGAGCCACAGTGGCGAACGACGTCTGACGACGACCCACGACGCGAACGGATTAGCTACACTTGAACGGCTACACGCGAACGGAACGTCTGGCTGTGACCCTTTATGTTTAATTGCTTGAGAATTCTGGATTTCACATAAAAAAAACTTCTGTAATATATGTAACACTTCGAACTATGAGCGGGATGAAATGGTGACCTCCAGAATTGTACAACTTCTATGTAGGAAGGTCTATAAAATCGTTATGTTGGAGGCCTGATGGTAAGGTGATAGCAGTGGGACTTGAAGATGGCACAATTTTATTGCATGATGTTGAAAATGGAAAGTTGTTGAGAAGCCTAAAGTCTCATGAAGTTGTGTGGTTAGTCTAAATTGGGTGGAAGATAGCCAGTTGATTACAGACAAAAATGAAATCTTGTCAACTTATGAAGATCGCACTCGCCGTATTTTCCCTCCTGCTCCTACAATTCCTCGAATGCCTGGACTTGTTTCTGGAGATACTGGTTGCATTGACGACTCTGAAGACTCATTTACGGAGTTGTCAAATTCTTCACATCAGCTGTTTAACATCTTGTGCAGTGGTGACAAAGAAGGAAGCATCTGTTTCAGCATATTTGGCGTTTTTCCAATTGGAAAAATAGCCCATACTCACTTTGTACATCTTTGACTAAGATCATCTTTACTACTTGGAAGATTACTGATATCGCATGGGAATTCTGTATCGCAGATGCAGTATGTCATAATTTAATTGGAAAAAACAACACCTTTCTATTTCTTGTGTACTGACTTGTGTTCTGTAAACATGTTGCTGTAGTTTACTTTAAACATGATCTTGAGTTTGAAGTGAGCTTTCTTCGTACATATATCTTTATACTTTGTTTCTATTTTTTTTTTCTCGCATCATCCTAACTTGTATTTGATATTTTTTCTCTATAGCTA

Coding sequence (CDS)

ATGCCTGGACTTGTTTCTGGAGATACTGGTTGCATTGACGACTCTGAAGACTCATTTACGGAGTTGTCAAATTCTTCACATCAGCTGTTTAACATCTTGTGCAGTGGTGACAAAGAAGGAAGCATCTGTTTCAGCATATTTGGCGTTTTTCCAATTGGAAAAATAGCCCATACTCACTTTGTACATCTTTGA

Protein sequence

MPGLVSGDTGCIDDSEDSFTELSNSSHQLFNILCSGDKEGSICFSIFGVFPIGKIAHTHFVHL
Homology
[Close]
BLAST of Cmc08g0228571 vs. NCBI nr
Match: KAA0034918.1 (anaphase-promoting complex subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 5.6e-23
Identity = 56/60 (93.33%), Postives = 56/60 (93.33%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQLFNILCSGDKEGSICFSIFGVFPIGKIAHTHF 60
           MPGLVSGDTGCIDDSEDSFTELSNSSHQLFNILCSGDKEGSICFSIFGVFPIGKI    F
Sbjct: 87  MPGLVSGDTGCIDDSEDSFTELSNSSHQLFNILCSGDKEGSICFSIFGVFPIGKIVLNWF 146

[Close]
BLAST of Cmc08g0228571 vs. NCBI nr
Match: XP_016899540.1 (PREDICTED: uncharacterized protein LOC103486068 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 0 

Query: 1  MPGLVSGDTGCIDDSEDSFTELSNSSHQLFNILCSGDKEGSICFSIFGVFPIGKIAHTHF 60
          MPGLVSGDTGCIDDSEDSFTELSNSSHQ FNILCSGDKEGSICFSIFGVFPIGKI  T  
Sbjct: 1  MPGLVSGDTGCIDDSEDSFTELSNSSHQRFNILCSGDKEGSICFSIFGVFPIGKIIDTRT 60

Query: 61 VH 63
          ++
Sbjct: 61 LY 62

[Close]
BLAST of Cmc08g0228571 vs. NCBI nr
Match: XP_022977972.1 (anaphase-promoting complex subunit 4 [Cucurbita maxima])

HSP 1 Score: 107.8 bits (268), Expect = 3.4e-20
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQLFNILCSGDKEGSICFSIFGVFPIGKIAHTHF 60
           MPGLVSGDTG IDDSEDSFTELSNSS Q FNILCSGDK+GSICFSIFG+FPIGKI + H 
Sbjct: 145 MPGLVSGDTGFIDDSEDSFTELSNSSQQRFNILCSGDKDGSICFSIFGIFPIGKI-NIHM 204

Query: 61  VHL 64
           +H+
Sbjct: 205 LHI 206

[Close]
BLAST of Cmc08g0228571 vs. NCBI nr
Match: XP_008463366.1 (PREDICTED: anaphase-promoting complex subunit 4 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 5.7e-20
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQLFNILCSGDKEGSICFSIFGVFPIGKIAHTHF 60
           MPGLVSGDTG IDDSEDSFTELSNSS Q FNILCSGDK+GSICFSIFGVFPIGKI + H 
Sbjct: 145 MPGLVSGDTGFIDDSEDSFTELSNSSQQRFNILCSGDKDGSICFSIFGVFPIGKI-NIHE 204

Query: 61  VHL 64
           +H+
Sbjct: 205 LHI 206

[Close]
BLAST of Cmc08g0228571 vs. NCBI nr
Match: KAA0046621.1 (anaphase-promoting complex subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 5.7e-20
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQLFNILCSGDKEGSICFSIFGVFPIGKIAHTHF 60
           MPGLVSGDTG IDDSEDSFTELSNSS Q FNILCSGDK+GSICFSIFGVFPIGKI + H 
Sbjct: 209 MPGLVSGDTGFIDDSEDSFTELSNSSQQRFNILCSGDKDGSICFSIFGVFPIGKI-NIHE 268

Query: 61  VHL 64
           +H+
Sbjct: 269 LHI 270

[Close]
BLAST of Cmc08g0228571 vs. ExPASy Swiss-Prot
Match: O65418 (Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=APC4 PE=2 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 6.8e-16
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQLFNILCSGDKEGSICFSIFGVFPIGKI 56
           MPGLV+GD+  +DD EDS  ELSN+S + FNILC+GD++G+ICFSIFG+F IGKI
Sbjct: 148 MPGLVAGDSSFMDDGEDSLAELSNTSFRKFNILCTGDRDGNICFSIFGIFQIGKI 202

[Close]
BLAST of Cmc08g0228571 vs. ExPASy TrEMBL
Match: A0A5A7SWD2 (Anaphase-promoting complex subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold103G00480 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.7e-23
Identity = 56/60 (93.33%), Postives = 56/60 (93.33%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQLFNILCSGDKEGSICFSIFGVFPIGKIAHTHF 60
           MPGLVSGDTGCIDDSEDSFTELSNSSHQLFNILCSGDKEGSICFSIFGVFPIGKI    F
Sbjct: 87  MPGLVSGDTGCIDDSEDSFTELSNSSHQLFNILCSGDKEGSICFSIFGVFPIGKIVLNWF 146

[Close]
BLAST of Cmc08g0228571 vs. ExPASy TrEMBL
Match: A0A1S4DV04 (uncharacterized protein LOC103486068 OS=Cucumis melo OX=3656 GN=LOC103486068 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.8e-23
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 0 

Query: 1  MPGLVSGDTGCIDDSEDSFTELSNSSHQLFNILCSGDKEGSICFSIFGVFPIGKIAHTHF 60
          MPGLVSGDTGCIDDSEDSFTELSNSSHQ FNILCSGDKEGSICFSIFGVFPIGKI  T  
Sbjct: 1  MPGLVSGDTGCIDDSEDSFTELSNSSHQRFNILCSGDKEGSICFSIFGVFPIGKIIDTRT 60

Query: 61 VH 63
          ++
Sbjct: 61 LY 62

[Close]
BLAST of Cmc08g0228571 vs. ExPASy TrEMBL
Match: A0A6J1IJW1 (Anaphase-promoting complex subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC111478105 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQLFNILCSGDKEGSICFSIFGVFPIGKIAHTHF 60
           MPGLVSGDTG IDDSEDSFTELSNSS Q FNILCSGDK+GSICFSIFG+FPIGKI + H 
Sbjct: 145 MPGLVSGDTGFIDDSEDSFTELSNSSQQRFNILCSGDKDGSICFSIFGIFPIGKI-NIHM 204

Query: 61  VHL 64
           +H+
Sbjct: 205 LHI 206

[Close]
BLAST of Cmc08g0228571 vs. ExPASy TrEMBL
Match: A0A5D3BMY3 (Anaphase-promoting complex subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00330 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQLFNILCSGDKEGSICFSIFGVFPIGKIAHTHF 60
           MPGLVSGDTG IDDSEDSFTELSNSS Q FNILCSGDK+GSICFSIFGVFPIGKI + H 
Sbjct: 215 MPGLVSGDTGFIDDSEDSFTELSNSSQQRFNILCSGDKDGSICFSIFGVFPIGKI-NIHE 274

Query: 61  VHL 64
           +H+
Sbjct: 275 LHI 276

[Close]
BLAST of Cmc08g0228571 vs. ExPASy TrEMBL
Match: A0A5A7TZ68 (Anaphase-promoting complex subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001730 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQLFNILCSGDKEGSICFSIFGVFPIGKIAHTHF 60
           MPGLVSGDTG IDDSEDSFTELSNSS Q FNILCSGDK+GSICFSIFGVFPIGKI + H 
Sbjct: 209 MPGLVSGDTGFIDDSEDSFTELSNSSQQRFNILCSGDKDGSICFSIFGVFPIGKI-NIHE 268

Query: 61  VHL 64
           +H+
Sbjct: 269 LHI 270

[Close]
BLAST of Cmc08g0228571 vs. TAIR 10
Match: AT4G21530.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 4.9e-17
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQLFNILCSGDKEGSICFSIFGVFPIGKI 56
           MPGLV+GD+  +DD EDS  ELSN+S + FNILC+GD++G+ICFSIFG+F IGKI
Sbjct: 148 MPGLVAGDSSFMDDGEDSLAELSNTSFRKFNILCTGDRDGNICFSIFGIFQIGKI 202

The following BLAST results are available for this feature:
BLAST of Cmc08g0228571 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0034918.15.6e-2393.33anaphase-promoting complex subunit 4 [Cucumis melo var. makuwa][more]
XP_016899540.11.6e-2288.71PREDICTED: uncharacterized protein LOC103486068 [Cucumis melo][more]
XP_022977972.13.4e-2082.54anaphase-promoting complex subunit 4 [Cucurbita maxima][more]
XP_008463366.15.7e-2084.13PREDICTED: anaphase-promoting complex subunit 4 [Cucumis melo][more]
KAA0046621.15.7e-2084.13anaphase-promoting complex subunit 4 [Cucumis melo var. makuwa][more]
BLAST of Cmc08g0228571 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O654186.8e-1667.27Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=APC4 PE=... [more]
BLAST of Cmc08g0228571 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SWD22.7e-2393.33Anaphase-promoting complex subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S4DV047.8e-2388.71uncharacterized protein LOC103486068 OS=Cucumis melo OX=3656 GN=LOC103486068 PE=... [more]
A0A6J1IJW11.6e-2082.54Anaphase-promoting complex subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC111478105... [more]
A0A5D3BMY32.8e-2084.13Anaphase-promoting complex subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7TZ682.8e-2084.13Anaphase-promoting complex subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of Cmc08g0228571 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G21530.14.9e-1767.27Transducin/WD40 repeat-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc08g0228571.1Cmc08g0228571.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031145 anaphase-promoting complex-dependent catabolic process
biological_process GO:0051301 cell division
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0048481 plant ovule development
biological_process GO:0070979 protein K11-linked ubiquitination
biological_process GO:0030071 regulation of mitotic metaphase/anaphase transition
cellular_component GO:0005680 anaphase-promoting complex
cellular_component GO:0034399 nuclear periphery