Cmc08g0218951 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0218951
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	RING-type E3 ubiquitin transferase
Location	CMiso1.1chr08: 7116246 .. 7116911 (-)
RNA-Seq Expression	Cmc08g0218951
Synteny	Cmc08g0218951

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATCTCCAATTCAAGGAGGTTTCTCCTTCCCTCCCCCACCGCCGCCGCCAGTCCGCCGGAGCTAGCGCAGCCCCGTCCTGGCTTCGGTAGCTTCGACATGAACGTAGTAATGGTTCTTTCAGTTTTACTCTGCGCTTTAATTTGCTCTCTGGGTCTCAACGCCATCCTAAAATGCGCGTTGAGGTGCTCCACTTTGCTAGCCACGGTGTCAGGTGGGCGTGGTGGTGGGGCCTTAGTGGTACATCCGAAAGGTGTTCGACGAAACGTCTTAAAGAAATTCCCAACAGTTGAGTACTCGAAAGAAGGGAATAAATTGAGAGGAATTGATGGGGAGTGCGTGATTTGTTTGTTGGAGTTTGAAGCAGGGGATCGGGTTCGTGTATTGCCCAAGTGTTATCATGGATTCCATGTTCATTGCATCGATAAATGGTTGAGTTCTCATACTTCTTGCCCCAAGTGCCGCAATTGCCTTACTGACACTTGCCATAAGATCGCCGCCGGCTGCGGGCAGGAGACGCCCGTGACAACGGCTGCAACGGCAGCAGAGAGTTCATCCTCTGTTGAACCACCGCGGGCGGAGGAGGTGGAGGTGAATGTTGTTATTGCTCCGGTGGAAAGGGAAGGTATGATAAATAACTATAGGGAAAGTATGAGTAGATGA

mRNA sequence

ATGTCTATCTCCAATTCAAGGAGGTTTCTCCTTCCCTCCCCCACCGCCGCCGCCAGTCCGCCGGAGCTAGCGCAGCCCCGTCCTGGCTTCGGTAGCTTCGACATGAACGTAGTAATGGTTCTTTCAGTTTTACTCTGCGCTTTAATTTGCTCTCTGGGTCTCAACGCCATCCTAAAATGCGCGTTGAGGTGCTCCACTTTGCTAGCCACGGTGTCAGGTGGGCGTGGTGGTGGGGCCTTAGTGGTACATCCGAAAGGTGTTCGACGAAACGTCTTAAAGAAATTCCCAACAGTTGAGTACTCGAAAGAAGGGAATAAATTGAGAGGAATTGATGGGGAGTGCGTGATTTGTTTGTTGGAGTTTGAAGCAGGGGATCGGGTTCGTGTATTGCCCAAGTGTTATCATGGATTCCATGTTCATTGCATCGATAAATGGTTGAGTTCTCATACTTCTTGCCCCAAGTGCCGCAATTGCCTTACTGACACTTGCCATAAGATCGCCGCCGGCTGCGGGCAGGAGACGCCCGTGACAACGGCTGCAACGGCAGCAGAGAGTTCATCCTCTGTTGAACCACCGCGGGCGGAGGAGGTGGAGGTGAATGTTGTTATTGCTCCGGTGGAAAGGGAAGGTATGATAAATAACTATAGGGAAAGTATGAGTAGATGA

Coding sequence (CDS)

ATGTCTATCTCCAATTCAAGGAGGTTTCTCCTTCCCTCCCCCACCGCCGCCGCCAGTCCGCCGGAGCTAGCGCAGCCCCGTCCTGGCTTCGGTAGCTTCGACATGAACGTAGTAATGGTTCTTTCAGTTTTACTCTGCGCTTTAATTTGCTCTCTGGGTCTCAACGCCATCCTAAAATGCGCGTTGAGGTGCTCCACTTTGCTAGCCACGGTGTCAGGTGGGCGTGGTGGTGGGGCCTTAGTGGTACATCCGAAAGGTGTTCGACGAAACGTCTTAAAGAAATTCCCAACAGTTGAGTACTCGAAAGAAGGGAATAAATTGAGAGGAATTGATGGGGAGTGCGTGATTTGTTTGTTGGAGTTTGAAGCAGGGGATCGGGTTCGTGTATTGCCCAAGTGTTATCATGGATTCCATGTTCATTGCATCGATAAATGGTTGAGTTCTCATACTTCTTGCCCCAAGTGCCGCAATTGCCTTACTGACACTTGCCATAAGATCGCCGCCGGCTGCGGGCAGGAGACGCCCGTGACAACGGCTGCAACGGCAGCAGAGAGTTCATCCTCTGTTGAACCACCGCGGGCGGAGGAGGTGGAGGTGAATGTTGTTATTGCTCCGGTGGAAAGGGAAGGTATGATAAATAACTATAGGGAAAGTATGAGTAGATGA

Protein sequence

MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAATAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRESMSR

Homology

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BLAST of Cmc08g0218951 vs. NCBI nr
Match: XP_008441014.1 (PREDICTED: RING-H2 finger protein ATL78 [Cucumis melo] >KAA0025547.1 RING-H2 finger protein ATL78 [Cucumis melo var. makuwa] >TYK25707.1 RING-H2 finger protein ATL78 [Cucumis melo var. makuwa])

HSP 1 Score: 443.0 bits (1138), Expect = 1.5e-120
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60
           MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC
Sbjct: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120
           ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180
           FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180

Query: 181 TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRESMSR 222
           TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRESMSR
Sbjct: 181 TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRESMSR 221

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BLAST of Cmc08g0218951 vs. NCBI nr
Match: XP_004148642.1 (RING-H2 finger protein ATL78 [Cucumis sativus] >KGN48380.1 hypothetical protein Csa_003943 [Cucumis sativus])

HSP 1 Score: 416.8 bits (1070), Expect = 1.2e-112
Identity = 210/221 (95.02%), Postives = 212/221 (95.93%), Query Frame = 0


Query: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60
           MSISNSRRFL+PS T AA+PPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC
Sbjct: 1   MSISNSRRFLIPSATVAATPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120
           ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180
           FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKI AGC QET VT   
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCAQETHVT--- 180

Query: 181 TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRESMSR 222
           TAAESSSSVEPPRAEEV VNVVIAPVEREGMINNYRESMSR
Sbjct: 181 TAAESSSSVEPPRAEEVGVNVVIAPVEREGMINNYRESMSR 218

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BLAST of Cmc08g0218951 vs. NCBI nr
Match: XP_038882744.1 (RING-H2 finger protein ATL78 [Benincasa hispida])

HSP 1 Score: 410.6 bits (1054), Expect = 8.5e-111
Identity = 206/221 (93.21%), Postives = 212/221 (95.93%), Query Frame = 0


Query: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60
           MSISNSRR LLPS TAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC
Sbjct: 1   MSISNSRRLLLPSATAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120
           ALRCSTLLATVSGGRGGGALVVHPKGVRRN+LKKFPTVEYSKEGNKLRGIDGECVICLLE
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNILKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180
           FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTC KI AGCGQE P+TTAA
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCPKITAGCGQEAPITTAA 180

Query: 181 TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRESMSR 222
             AESSSSV+PP AEEV VNVVIAPVEREG+I+NYRES+SR
Sbjct: 181 -LAESSSSVDPPAAEEVGVNVVIAPVEREGLISNYRESISR 220

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BLAST of Cmc08g0218951 vs. NCBI nr
Match: AAL33552.1 (RING-H2 zinc finger protein, partial [Cucumis melo])

HSP 1 Score: 353.6 bits (906), Expect = 1.2e-93
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 9   FLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCSTLL 68
           FLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCSTLL
Sbjct: 1   FLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCSTLL 60

Query: 69  ATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVR 128
           ATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVR
Sbjct: 61  ATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVR 120

Query: 129 VLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTT 179
           VLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTT
Sbjct: 121 VLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTT 170

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BLAST of Cmc08g0218951 vs. NCBI nr
Match: KAG7034428.1 (RING-H2 finger protein ATL78, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 345.5 bits (885), Expect = 3.4e-91
Identity = 174/215 (80.93%), Postives = 183/215 (85.12%), Query Frame = 0


Query: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60
           MSI+NSRR LLP+ T  ASPP LAQPRPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKC
Sbjct: 1   MSITNSRRLLLPAVT--ASPPVLAQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKC 60

Query: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120
           ALRCS+LLAT+SGGRGGG   VHPKGVRRNVLKKFPTVEY KEGNKLRGIDGECVICLLE
Sbjct: 61  ALRCSSLLATMSGGRGGGIFAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180
           FE GDRVRVLPKC+HGFHVHCIDKWLSSH SCPKCRNCLTDTCHKIA+G  QE P     
Sbjct: 121 FEGGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCLTDTCHKIASGGSQEAPDGEFI 180

Query: 181 TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNY 216
               S     PP  EEV VNVVIAPVEREG++ NY
Sbjct: 181 AIDPSPPPPPPPPGEEVVVNVVIAPVEREGLVCNY 213

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BLAST of Cmc08g0218951 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.5e-44
Identity = 107/213 (50.23%), Postives = 133/213 (62.44%), Query Frame = 0


Query: 4   SNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALR 63
           S SR+ L    T   SP     P  G  +FD NVVMVLSVLLCAL+CSLGLN+I++CALR
Sbjct: 25  SYSRKLLF--HTHDQSPTPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALR 84

Query: 64  CSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEA 123
           CS L+ + +GG      + +  GV+R  LK F TV YS E N L G+D EC ICL EF A
Sbjct: 85  CSNLVPSEAGGDNYPVRLTN-TGVKRKALKSFQTVSYSTELN-LPGLDTECAICLSEFVA 144

Query: 124 GDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAATAA 183
            +RV++LP C+HGFHV CIDKWLSSH+SCP CR+CL  TC KI A C Q           
Sbjct: 145 EERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKI-ADCSQ----------T 204

Query: 184 ESSSSVEPPRAEEVEVNVVIAPVEREGMINNYR 217
            S +S +PP   +  + + IAP+E E  I  +R
Sbjct: 205 SSLNSTQPP---QDSIILQIAPLEPERWIRWFR 219

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BLAST of Cmc08g0218951 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.0e-37
Identity = 90/199 (45.23%), Postives = 118/199 (59.30%), Query Frame = 0


Query: 36  NVVMVLSVLLCALICSLGLNAILKCALRCSTL------LATVSGGRGGGALVVHPKGVRR 95
           NV+M+LS+L+C +IC LGL+ I++CALR ST       + ++S  RG        KG+++
Sbjct: 57  NVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSS-----NKGIKK 116

Query: 96  NVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSH 155
             L+ FP V YS E N L G+D ECVICL +F +G+++R+LPKC HGFHV CIDKWL  H
Sbjct: 117 KALRMFPVVSYSPEMN-LPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQH 176

Query: 156 TSCPKCRNCLTDTCHKIAAGCGQETPVTTAATAAESSSSVEPPRAEEVEVN--------- 215
            +CPKCRNCL +TC KI     Q   VT   T     + V     E V V          
Sbjct: 177 LTCPKCRNCLVETCQKILGDFSQADSVTAEPTEIVIVTIVPLEPTEIVIVTIAPLEPTEI 236

Query: 216 --VVIAPVEREGMINNYRE 218
             V+IAP+E EG +N  RE
Sbjct: 237 VIVMIAPLEPEGRVNTIRE 249

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BLAST of Cmc08g0218951 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.1e-35
Identity = 85/197 (43.15%), Postives = 116/197 (58.88%), Query Frame = 0


Query: 28  PGFGSFDMNVVMVLSVLLCALICSLGLNAILKCA------LRCSTLLATVSGGRGGGALV 87
           P   +   NV+M+LS+LLC +ICSLGL+ I++CA         S  ++  S  R      
Sbjct: 43  PDKNNLSGNVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSV-- 102

Query: 88  VHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKCYHGFHVHC 147
              KG+++  LK  P V YS E N L G+  ECVICL +F AG+++RVLPKC HGFH+ C
Sbjct: 103 --NKGIKKKALKMLPVVNYSPEIN-LPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRC 162

Query: 148 IDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAATAAESSSSVEPPRAEEVEVNV 207
           IDKWL+ H +CPKCR+CL DTC K+ + C     V  AATA ES             +++
Sbjct: 163 IDKWLTQHMTCPKCRHCLVDTCQKVLSDCDAADQV--AATATES-------------IDI 219

Query: 208 VIAPVEREGMINNYRES 219
            I+P+E E  +  +RES
Sbjct: 223 RISPLEPEARVATFRES 219

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BLAST of Cmc08g0218951 vs. ExPASy Swiss-Prot
Match: Q94BY6 (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.6e-35
Identity = 85/189 (44.97%), Postives = 111/189 (58.73%), Query Frame = 0


Query: 36  NVVMVLSVLLCALICSLGLNAILKCALR------CSTLLATVSGGRGGGALVVHPKGVRR 95
           NV+M+LSVL+C +IC LGL+ I++CA R       S  +A +S   G        KG+ +
Sbjct: 58  NVLMLLSVLICGIICCLGLHYIIRCAFRRTSSFMISEPIAGLSTPCGSS-----NKGINK 117

Query: 96  NVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSH 155
             L+ FP V YS E N L G+  ECVICL +F +G+++R+LPKC+HGFHV CIDKWL  H
Sbjct: 118 KALRMFPVVSYSPEMN-LPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQH 177

Query: 156 TSCPKCRNCLTDTCHKIAAGCGQETPVTTAATAAESSSSVEPPRAEEVEVNVVIAPVERE 215
            +CPKCR+CL +TC KI     Q   V    TA+               V V IAP+E E
Sbjct: 178 LTCPKCRHCLVETCQKILGDFSQADQVAATPTAS---------------VIVRIAPLEPE 225

Query: 216 GMINNYRES 219
           G +N  RES
Sbjct: 238 GRVNILRES 225

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BLAST of Cmc08g0218951 vs. ExPASy Swiss-Prot
Match: Q6NML0 (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 7.9e-35
Identity = 85/189 (44.97%), Postives = 116/189 (61.38%), Query Frame = 0


Query: 36  NVVMVLSVLLCALICSLGLNAILKCALRCSTL------LATVSGGRGGGALVVHPKGVRR 95
           NV+M+LSVL+C +IC LGL+ I++CA R S+       ++++S  R         KG+++
Sbjct: 57  NVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRSSS-----NKGIKK 116

Query: 96  NVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSH 155
             L+ FP V YS+E N L GI  ECVICL +F +G+++R+LPKC HGFHV CIDKWL  H
Sbjct: 117 KALRMFPVVSYSREMN-LPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHH 176

Query: 156 TSCPKCRNCLTDTCHKIAAGCGQETPVTTAATAAESSSSVEPPRAEEVEVNVVIAPVERE 215
            +CPKCR+CL +TC KI     Q    + A+T  ES             V V I P+E E
Sbjct: 177 LTCPKCRHCLVETCQKILGDFSQAD--SMASTPTES-------------VIVRIDPLEPE 224

Query: 216 GMINNYRES 219
           G +N +RES
Sbjct: 237 GRVNTFRES 224

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BLAST of Cmc08g0218951 vs. ExPASy TrEMBL
Match: A0A5A7SLG8 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1230G00380 PE=3 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 7.5e-121
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60
           MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC
Sbjct: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120
           ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180
           FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180

Query: 181 TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRESMSR 222
           TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRESMSR
Sbjct: 181 TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRESMSR 221

[Close]

BLAST of Cmc08g0218951 vs. ExPASy TrEMBL
Match: A0A1S3B203 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103485255 PE=3 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 7.5e-121
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60
           MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC
Sbjct: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120
           ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180
           FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180

Query: 181 TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRESMSR 222
           TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRESMSR
Sbjct: 181 TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRESMSR 221

[Close]

BLAST of Cmc08g0218951 vs. ExPASy TrEMBL
Match: A0A0A0KF92 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G484580 PE=3 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 5.8e-113
Identity = 210/221 (95.02%), Postives = 212/221 (95.93%), Query Frame = 0


Query: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60
           MSISNSRRFL+PS T AA+PPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC
Sbjct: 1   MSISNSRRFLIPSATVAATPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120
           ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180
           FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKI AGC QET VT   
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCAQETHVT--- 180

Query: 181 TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRESMSR 222
           TAAESSSSVEPPRAEEV VNVVIAPVEREGMINNYRESMSR
Sbjct: 181 TAAESSSSVEPPRAEEVGVNVVIAPVEREGMINNYRESMSR 218

[Close]

BLAST of Cmc08g0218951 vs. ExPASy TrEMBL
Match: Q8W550 (RING-type E3 ubiquitin transferase (Fragment) OS=Cucumis melo OX=3656 PE=2 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 6.0e-94
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 9   FLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCSTLL 68
           FLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCSTLL
Sbjct: 1   FLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCSTLL 60

Query: 69  ATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVR 128
           ATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVR
Sbjct: 61  ATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVR 120

Query: 129 VLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTT 179
           VLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTT
Sbjct: 121 VLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTT 170

[Close]

BLAST of Cmc08g0218951 vs. ExPASy TrEMBL
Match: A0A6J1IR86 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111478013 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.2e-88
Identity = 172/216 (79.63%), Postives = 185/216 (85.65%), Query Frame = 0


Query: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60
           MSI+NSRR LLP+ T  ASPP   Q RPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKC
Sbjct: 1   MSITNSRRLLLPAVT--ASPPVSVQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKC 60

Query: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120
           ALRCS+LLAT+S GRGGG L VHPKGVRRNVLKKFPTVEY KEGNKLRGIDGECVICL E
Sbjct: 61  ALRCSSLLATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSE 120

Query: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180
           FE GDRVRVLPKC+HGFHVHCIDKWLSSH SCPKCRNCL +TCHKIAAG  QE PVT ++
Sbjct: 121 FEGGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCL-NTCHKIAAGGSQEAPVTASS 180

Query: 181 TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYR 217
           +  + S    PP  EEV VNVVIAPVEREG++ NYR
Sbjct: 181 SPVDPSPP-PPPPGEEVVVNVVIAPVEREGLVCNYR 212

[Close]

BLAST of Cmc08g0218951 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-45
Identity = 107/213 (50.23%), Postives = 133/213 (62.44%), Query Frame = 0


Query: 4   SNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALR 63
           S SR+ L    T   SP     P  G  +FD NVVMVLSVLLCAL+CSLGLN+I++CALR
Sbjct: 25  SYSRKLLF--HTHDQSPTPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALR 84

Query: 64  CSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEA 123
           CS L+ + +GG      + +  GV+R  LK F TV YS E N L G+D EC ICL EF A
Sbjct: 85  CSNLVPSEAGGDNYPVRLTN-TGVKRKALKSFQTVSYSTELN-LPGLDTECAICLSEFVA 144

Query: 124 GDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAATAA 183
            +RV++LP C+HGFHV CIDKWLSSH+SCP CR+CL  TC KI A C Q           
Sbjct: 145 EERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKI-ADCSQ----------T 204

Query: 184 ESSSSVEPPRAEEVEVNVVIAPVEREGMINNYR 217
            S +S +PP   +  + + IAP+E E  I  +R
Sbjct: 205 SSLNSTQPP---QDSIILQIAPLEPERWIRWFR 219

[Close]

BLAST of Cmc08g0218951 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 156.0 bits (393), Expect = 3.5e-38
Identity = 90/199 (45.23%), Postives = 118/199 (59.30%), Query Frame = 0


Query: 36  NVVMVLSVLLCALICSLGLNAILKCALRCSTL------LATVSGGRGGGALVVHPKGVRR 95
           NV+M+LS+L+C +IC LGL+ I++CALR ST       + ++S  RG        KG+++
Sbjct: 57  NVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSS-----NKGIKK 116

Query: 96  NVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSH 155
             L+ FP V YS E N L G+D ECVICL +F +G+++R+LPKC HGFHV CIDKWL  H
Sbjct: 117 KALRMFPVVSYSPEMN-LPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQH 176

Query: 156 TSCPKCRNCLTDTCHKIAAGCGQETPVTTAATAAESSSSVEPPRAEEVEVN--------- 215
            +CPKCRNCL +TC KI     Q   VT   T     + V     E V V          
Sbjct: 177 LTCPKCRNCLVETCQKILGDFSQADSVTAEPTEIVIVTIVPLEPTEIVIVTIAPLEPTEI 236

Query: 216 --VVIAPVEREGMINNYRE 218
             V+IAP+E EG +N  RE
Sbjct: 237 VIVMIAPLEPEGRVNTIRE 249

[Close]

BLAST of Cmc08g0218951 vs. TAIR 10
Match: AT3G18773.1 (RING/U-box superfamily protein )

HSP 1 Score: 150.6 bits (379), Expect = 1.5e-36
Identity = 85/197 (43.15%), Postives = 116/197 (58.88%), Query Frame = 0


Query: 28  PGFGSFDMNVVMVLSVLLCALICSLGLNAILKCA------LRCSTLLATVSGGRGGGALV 87
           P   +   NV+M+LS+LLC +ICSLGL+ I++CA         S  ++  S  R      
Sbjct: 43  PDKNNLSGNVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSV-- 102

Query: 88  VHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKCYHGFHVHC 147
              KG+++  LK  P V YS E N L G+  ECVICL +F AG+++RVLPKC HGFH+ C
Sbjct: 103 --NKGIKKKALKMLPVVNYSPEIN-LPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRC 162

Query: 148 IDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAATAAESSSSVEPPRAEEVEVNV 207
           IDKWL+ H +CPKCR+CL DTC K+ + C     V  AATA ES             +++
Sbjct: 163 IDKWLTQHMTCPKCRHCLVDTCQKVLSDCDAADQV--AATATES-------------IDI 219

Query: 208 VIAPVEREGMINNYRES 219
            I+P+E E  +  +RES
Sbjct: 223 RISPLEPEARVATFRES 219

[Close]

BLAST of Cmc08g0218951 vs. TAIR 10
Match: AT1G49200.1 (RING/U-box superfamily protein )

HSP 1 Score: 149.4 bits (376), Expect = 3.3e-36
Identity = 85/189 (44.97%), Postives = 111/189 (58.73%), Query Frame = 0


Query: 36  NVVMVLSVLLCALICSLGLNAILKCALR------CSTLLATVSGGRGGGALVVHPKGVRR 95
           NV+M+LSVL+C +IC LGL+ I++CA R       S  +A +S   G        KG+ +
Sbjct: 58  NVLMLLSVLICGIICCLGLHYIIRCAFRRTSSFMISEPIAGLSTPCGSS-----NKGINK 117

Query: 96  NVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSH 155
             L+ FP V YS E N L G+  ECVICL +F +G+++R+LPKC+HGFHV CIDKWL  H
Sbjct: 118 KALRMFPVVSYSPEMN-LPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQH 177

Query: 156 TSCPKCRNCLTDTCHKIAAGCGQETPVTTAATAAESSSSVEPPRAEEVEVNVVIAPVERE 215
            +CPKCR+CL +TC KI     Q   V    TA+               V V IAP+E E
Sbjct: 178 LTCPKCRHCLVETCQKILGDFSQADQVAATPTAS---------------VIVRIAPLEPE 225

Query: 216 GMINNYRES 219
           G +N  RES
Sbjct: 238 GRVNILRES 225

[Close]

BLAST of Cmc08g0218951 vs. TAIR 10
Match: AT1G49210.1 (RING/U-box superfamily protein )

HSP 1 Score: 148.7 bits (374), Expect = 5.6e-36
Identity = 85/189 (44.97%), Postives = 116/189 (61.38%), Query Frame = 0


Query: 36  NVVMVLSVLLCALICSLGLNAILKCALRCSTL------LATVSGGRGGGALVVHPKGVRR 95
           NV+M+LSVL+C +IC LGL+ I++CA R S+       ++++S  R         KG+++
Sbjct: 57  NVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRSSS-----NKGIKK 116

Query: 96  NVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSH 155
             L+ FP V YS+E N L GI  ECVICL +F +G+++R+LPKC HGFHV CIDKWL  H
Sbjct: 117 KALRMFPVVSYSREMN-LPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHH 176

Query: 156 TSCPKCRNCLTDTCHKIAAGCGQETPVTTAATAAESSSSVEPPRAEEVEVNVVIAPVERE 215
            +CPKCR+CL +TC KI     Q    + A+T  ES             V V I P+E E
Sbjct: 177 LTCPKCRHCLVETCQKILGDFSQAD--SMASTPTES-------------VIVRIDPLEPE 224

Query: 216 GMINNYRES 219
           G +N +RES
Sbjct: 237 GRVNTFRES 224

The following BLAST results are available for this feature:

BLAST of Cmc08g0218951 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441014.1	1.5e-120	100.00	PREDICTED: RING-H2 finger protein ATL78 [Cucumis melo] >KAA0025547.1 RING-H2 fin...	[more]
XP_004148642.1	1.2e-112	95.02	RING-H2 finger protein ATL78 [Cucumis sativus] >KGN48380.1 hypothetical protein ...	[more]
XP_038882744.1	8.5e-111	93.21	RING-H2 finger protein ATL78 [Benincasa hispida]	[more]
AAL33552.1	1.2e-93	100.00	RING-H2 zinc finger protein, partial [Cucumis melo]	[more]
KAG7034428.1	3.4e-91	80.93	RING-H2 finger protein ATL78, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]

BLAST of Cmc08g0218951 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQG7	2.5e-44	50.23	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
P0C034	5.0e-37	45.23	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]
Q9LS99	2.1e-35	43.15	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1	[more]
Q94BY6	4.6e-35	44.97	RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1	[more]
Q6NML0	7.9e-35	44.97	E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ...	[more]

BLAST of Cmc08g0218951 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLG8	7.5e-121	100.00	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B203	7.5e-121	100.00	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103485255 PE=3 ...	[more]
A0A0A0KF92	5.8e-113	95.02	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G484580 PE...	[more]
Q8W550	6.0e-94	100.00	RING-type E3 ubiquitin transferase (Fragment) OS=Cucumis melo OX=3656 PE=2 SV=1	[more]
A0A6J1IR86	2.2e-88	79.63	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111478013 P...	[more]

BLAST of Cmc08g0218951 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49230.1	1.7e-45	50.23	RING/U-box superfamily protein	[more]
AT1G49220.1	3.5e-38	45.23	RING/U-box superfamily protein	[more]
AT3G18773.1	1.5e-36	43.15	RING/U-box superfamily protein	[more]
AT1G49200.1	3.3e-36	44.97	RING/U-box superfamily protein	[more]
AT1G49210.1	5.6e-36	44.97	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 114..155 e-value: 4.1E-6 score: 36.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 113..156 e-value: 1.4E-13 score: 51.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 114..156 score: 11.913911
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 79..161 e-value: 3.5E-21 score: 76.7
None	No IPR available	PANTHER	PTHR46905:SF7	RING-H2 FINGER PROTEIN ATL78	coord: 5..217
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 113..156 e-value: 1.45303E-15 score: 66.1713
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 113..161
IPR044602	RING-H2 finger protein ATL10/ATL75-79	PANTHER	PTHR46905	RING-H2 FINGER PROTEIN ATL78	coord: 5..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0218951.1	Cmc08g0218951.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016020	membrane
molecular_function	GO:0016740	transferase activity