Cmc07g0204871 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0204871
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr07: 26005068 .. 26006909 (-)
RNA-Seq Expression	Cmc07g0204871
Synteny	Cmc07g0204871

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCCATAACAAGTTCTAGTTTCACTTCAATTTCTCCATTGATATTTGATGGAGACAACTACCAAGTTTGGGCAGTTCGTATGGAAGCTTATATGGAAGCTTTGGATATTTGGGAAGCAGTGGAAGAGGATTATGAAATTCCTGCTCTTCCAGACAATCCTACCATGGCACAAATCAAAGCGCAAAAGGAGAAGAAGACAAAGAAATCCAAGGCAAAGGCATGTTTGTTTGCTGCAGTCTCATCTACTATCTTCACTAGAATTATGACTATGAGATCAGCATATGAGATATGGAATTATCTCAAGTCAGAATATGAGGGAGATGAAAGAATCAAAGGAATGCGTGTGCTAAACTTGATTCGAGAATTCGAGTTGCAGAAGATGAAGGAAACAGAATCAATTAAAGAGTATTCTGTTAGGTTATTGGACATTGCAAACCAAATCAGATTACTTGGTTCTGTGTTCAAGGACTCAAGAATTGTAGAAAAAATTCTTGTATCAGTGCCTGAAAAATTTGAGGCATCTATTTCTGCCTTAGAAAATACCAAAGATTTGACTCAAATCACTCTTGCAGAGATACTCAATGCTTTGCAAGCGCAGGAACAAAGAAGAGCCATGAGGCAAGAAGGTGCTGTTGAAGGAGCCTTGCCAGCGAAGCATCATGAGAACGTTAGGAACAATAAGAAGAAGAAGTTTTTCAAGAAGAATCAAATTTCTACTAGAGAATCTTCAACTTACAACAAAGCAGGAGTCAAGAAGGGATCCTATCCTCCCTGTTCACATTGCAATAAACAGGGTCATCCTCCTTTTAAATGCTGGAGGAGACCAAACGCCAAGTGCACCAAATGTAACCAAATGGGGCATGAAGCTGTAATTTGCAGGAACAATAATCAACAACAAGGTGTAGAGGCCAAAATTGCTTATCAGGAGGAGGAGGAGGATCAATTGTTTGTGGCAACATGCTTCGTGGGTGGTGAGTCAAATGAAAGCTGGCTGATTGACAGTGGATGTACCAACCATATGACTCATGACAAGGAGTTGTTTAAAGATCTGAAGCCAACAAATATCACCAAAGTCAGAATTGGCAATGGAGACTACATCTCAGTCAAAGGAAAGGGGACTATTGCGATTGCCAGTTGTAAAGGTACAAAACATATACATGATGTTCTTTTTGTACCTGACATTAACCAAAATTTGTTGAGTGTGGGTCAACTTATTGAAAAAGGTTTTAAAGTTACTTTTGAAAATGAATATTGCTTGATTAAGGATGCAGCAAATCAAGATATTTTCAAAGTAAAAATGAAAGGAAAAAGTTTTTCACTTAATCCTTTAGAGGAGGAGCAATCTGTTTTTGCTCTCAAAGAAGATGAAACACAGCTTTGGCACAAAAGAGTCGGTCACTATCATCATCAAGGGCTGCTACAACTAACGGAGTTGGCACTTGATTTTCCCAAGCTTAGTGAAGAAATCTCAAGTTGCAAAGCGTGTCATTTTGGAAAGCAAAATAGGAAGTCATTTCCCAAGTCATCTTGGAGAGCCACTCAAAAATTGCAGCTCATTCACACAGATGTTGCAGGTCCTCAGAGAACACCTTCTTTAAAAGGCAGTCTCTATTATATTGCTTTTATTGATGACTTCACCAGAATGTGCTGGATTTTTTTCTTGAAGTTTAAATCAGAGGTTGCTCATGTCTTTTGGAAGTTCAAGGCAAGAGTTGAAAATGAAAGTGGTTGCAAAATTCAAATGGTAAGGTCTGACAATGGGAAGGAGTATGTTTCGGCAGAATTTGACAAGTTTTGTGAAGATTCAGGCATAAAACATCAACTTACAGCTCCTTAA

mRNA sequence

ATGGACGCCATAACAAGTTCTAGTTTCACTTCAATTTCTCCATTGATATTTGATGGAGACAACTACCAAGTTTGGGCAGTTCGTATGGAAGCTTATATGGAAGCTTTGGATATTTGGGAAGCAGTGGAAGAGGATTATGAAATTCCTGCTCTTCCAGACAATCCTACCATGGCACAAATCAAAGCGCAAAAGGAGAAGAAGACAAAGAAATCCAAGGCAAAGGCATGTTTGTTTGCTGCAGTCTCATCTACTATCTTCACTAGAATTATGACTATGAGATCAGCATATGAGATATGGAATTATCTCAAGTCAGAATATGAGGGAGATGAAAGAATCAAAGGAATGCGTGTGCTAAACTTGATTCGAGAATTCGAGTTGCAGAAGATGAAGGAAACAGAATCAATTAAAGAGTATTCTGTTAGGTTATTGGACATTGCAAACCAAATCAGATTACTTGGTTCTGTGTTCAAGGACTCAAGAATTGTAGAAAAAATTCTTGTATCAGTGCCTGAAAAATTTGAGGCATCTATTTCTGCCTTAGAAAATACCAAAGATTTGACTCAAATCACTCTTGCAGAGATACTCAATGCTTTGCAAGCGCAGGAACAAAGAAGAGCCATGAGGCAAGAAGGTGCTGTTGAAGGAGCCTTGCCAGCGAAGCATCATGAGAACGTTAGGAACAATAAGAAGAAGAAGTTTTTCAAGAAGAATCAAATTTCTACTAGAGAATCTTCAACTTACAACAAAGCAGGAGTCAAGAAGGGATCCTATCCTCCCTGTTCACATTGCAATAAACAGGGTCATCCTCCTTTTAAATGCTGGAGGAGACCAAACGCCAAGTGCACCAAATGTAACCAAATGGGGCATGAAGCTGTAATTTGCAGGAACAATAATCAACAACAAGGTGTAGAGGCCAAAATTGCTTATCAGGAGGAGGAGGAGGATCAATTGTTTGTGGCAACATGCTTCGTGGGTGGTGAGTCAAATGAAAGCTGGCTGATTGACAGTGGATGTACCAACCATATGACTCATGACAAGGAGTTGTTTAAAGATCTGAAGCCAACAAATATCACCAAAGTCAGAATTGGCAATGGAGACTACATCTCAGTCAAAGGAAAGGGGACTATTGCGATTGCCAGTTGTAAAGGTACAAAACATATACATGATGTTCTTTTTGTACCTGACATTAACCAAAATTTGTTGAGTGTGGGTCAACTTATTGAAAAAGGTTTTAAAGTTACTTTTGAAAATGAATATTGCTTGATTAAGGATGCAGCAAATCAAGATATTTTCAAAGTAAAAATGAAAGGAAAAAGTTTTTCACTTAATCCTTTAGAGGAGGAGCAATCTGTTTTTGCTCTCAAAGAAGATGAAACACAGCTTTGGCACAAAAGAGTCGGTCACTATCATCATCAAGGGCTGCTACAACTAACGGAGTTGGCACTTGATTTTCCCAAGCTTAGTGAAGAAATCTCAAGTTGCAAAGCGTGTCATTTTGGAAAGCAAAATAGGAAGTCATTTCCCAAGTCATCTTGGAGAGCCACTCAAAAATTGCAGCTCATTCACACAGATGTTGCAGGTCCTCAGAGAACACCTTCTTTAAAAGGCAGTCTCTATTATATTGCTTTTATTGATGACTTCACCAGAATGTGCTGGATTTTTTTCTTGAAGTTTAAATCAGAGGTTGCTCATGTCTTTTGGAAGTTCAAGGCAAGAGTTGAAAATGAAAGTGGTTGCAAAATTCAAATGGTAAGGTCTGACAATGGGAAGGAGTATGTTTCGGCAGAATTTGACAAGTTTTGTGAAGATTCAGGCATAAAACATCAACTTACAGCTCCTTAA

Coding sequence (CDS)

ATGGACGCCATAACAAGTTCTAGTTTCACTTCAATTTCTCCATTGATATTTGATGGAGACAACTACCAAGTTTGGGCAGTTCGTATGGAAGCTTATATGGAAGCTTTGGATATTTGGGAAGCAGTGGAAGAGGATTATGAAATTCCTGCTCTTCCAGACAATCCTACCATGGCACAAATCAAAGCGCAAAAGGAGAAGAAGACAAAGAAATCCAAGGCAAAGGCATGTTTGTTTGCTGCAGTCTCATCTACTATCTTCACTAGAATTATGACTATGAGATCAGCATATGAGATATGGAATTATCTCAAGTCAGAATATGAGGGAGATGAAAGAATCAAAGGAATGCGTGTGCTAAACTTGATTCGAGAATTCGAGTTGCAGAAGATGAAGGAAACAGAATCAATTAAAGAGTATTCTGTTAGGTTATTGGACATTGCAAACCAAATCAGATTACTTGGTTCTGTGTTCAAGGACTCAAGAATTGTAGAAAAAATTCTTGTATCAGTGCCTGAAAAATTTGAGGCATCTATTTCTGCCTTAGAAAATACCAAAGATTTGACTCAAATCACTCTTGCAGAGATACTCAATGCTTTGCAAGCGCAGGAACAAAGAAGAGCCATGAGGCAAGAAGGTGCTGTTGAAGGAGCCTTGCCAGCGAAGCATCATGAGAACGTTAGGAACAATAAGAAGAAGAAGTTTTTCAAGAAGAATCAAATTTCTACTAGAGAATCTTCAACTTACAACAAAGCAGGAGTCAAGAAGGGATCCTATCCTCCCTGTTCACATTGCAATAAACAGGGTCATCCTCCTTTTAAATGCTGGAGGAGACCAAACGCCAAGTGCACCAAATGTAACCAAATGGGGCATGAAGCTGTAATTTGCAGGAACAATAATCAACAACAAGGTGTAGAGGCCAAAATTGCTTATCAGGAGGAGGAGGAGGATCAATTGTTTGTGGCAACATGCTTCGTGGGTGGTGAGTCAAATGAAAGCTGGCTGATTGACAGTGGATGTACCAACCATATGACTCATGACAAGGAGTTGTTTAAAGATCTGAAGCCAACAAATATCACCAAAGTCAGAATTGGCAATGGAGACTACATCTCAGTCAAAGGAAAGGGGACTATTGCGATTGCCAGTTGTAAAGGTACAAAACATATACATGATGTTCTTTTTGTACCTGACATTAACCAAAATTTGTTGAGTGTGGGTCAACTTATTGAAAAAGGTTTTAAAGTTACTTTTGAAAATGAATATTGCTTGATTAAGGATGCAGCAAATCAAGATATTTTCAAAGTAAAAATGAAAGGAAAAAGTTTTTCACTTAATCCTTTAGAGGAGGAGCAATCTGTTTTTGCTCTCAAAGAAGATGAAACACAGCTTTGGCACAAAAGAGTCGGTCACTATCATCATCAAGGGCTGCTACAACTAACGGAGTTGGCACTTGATTTTCCCAAGCTTAGTGAAGAAATCTCAAGTTGCAAAGCGTGTCATTTTGGAAAGCAAAATAGGAAGTCATTTCCCAAGTCATCTTGGAGAGCCACTCAAAAATTGCAGCTCATTCACACAGATGTTGCAGGTCCTCAGAGAACACCTTCTTTAAAAGGCAGTCTCTATTATATTGCTTTTATTGATGACTTCACCAGAATGTGCTGGATTTTTTTCTTGAAGTTTAAATCAGAGGTTGCTCATGTCTTTTGGAAGTTCAAGGCAAGAGTTGAAAATGAAAGTGGTTGCAAAATTCAAATGGTAAGGTCTGACAATGGGAAGGAGTATGTTTCGGCAGAATTTGACAAGTTTTGTGAAGATTCAGGCATAAAACATCAACTTACAGCTCCTTAA

Protein sequence

MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTMRSAYEIWNYLKSEYEGDERIKGMRVLNLIREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQISTRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQQGVEAKIAYQEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIHDVLFVPDINQNLLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAP

Homology

[Close]

BLAST of Cmc07g0204871 vs. NCBI nr
Match: TYJ95793.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK04080.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK07482.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK23562.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK24808.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 1220.3 bits (3156), Expect = 0.0e+00
Identity = 611/614 (99.51%), Postives = 612/614 (99.67%), Query Frame = 0


Query: 1   MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60
           MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI
Sbjct: 1   MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTMRSAYEIWNYLKSEYEGDERIKGMRVLNL 120
           KAQKEKKTKKSKAKACLFAAVSSTIFTRIMT+RSAYEIWNYLKSEYEGDERIKGMRVLNL
Sbjct: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERIKGMRVLNL 120

Query: 121 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180
           IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL
Sbjct: 121 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180

Query: 181 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 240
           ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS
Sbjct: 181 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 240

Query: 241 TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 300
           TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Sbjct: 241 TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 300

Query: 301 QGVEAKIAYQ-EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 360
           QGVEAKIAYQ EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK
Sbjct: 301 QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 360

Query: 361 VRIGNGDYISVKGKGTIAIASCKGTKHIHDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 420
           VRIGNGDYISVKGKGTIAIASCKGTKHI DVLFVPDINQNLLSVGQLIEKGFKVTFENEY
Sbjct: 361 VRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 420

Query: 421 CLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 480
           CLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTE
Sbjct: 421 CLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 480

Query: 481 LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 540
           LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY
Sbjct: 481 LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 540

Query: 541 YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 600
           YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK
Sbjct: 541 YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 600

Query: 601 FCEDSGIKHQLTAP 614
           FCEDSGIKHQLTAP
Sbjct: 601 FCEDSGIKHQLTAP 614

[Close]

BLAST of Cmc07g0204871 vs. NCBI nr
Match: TYK21117.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 1220.3 bits (3156), Expect = 0.0e+00
Identity = 611/614 (99.51%), Postives = 612/614 (99.67%), Query Frame = 0


Query: 1   MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60
           MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI
Sbjct: 117 MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 176

Query: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTMRSAYEIWNYLKSEYEGDERIKGMRVLNL 120
           KAQKEKKTKKSKAKACLFAAVSSTIFTRIMT+RSAYEIWNYLKSEYEGDERIKGMRVLNL
Sbjct: 177 KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERIKGMRVLNL 236

Query: 121 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180
           IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL
Sbjct: 237 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 296

Query: 181 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 240
           ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS
Sbjct: 297 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 356

Query: 241 TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 300
           TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Sbjct: 357 TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 416

Query: 301 QGVEAKIAYQ-EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 360
           QGVEAKIAYQ EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK
Sbjct: 417 QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 476

Query: 361 VRIGNGDYISVKGKGTIAIASCKGTKHIHDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 420
           VRIGNGDYISVKGKGTIAIASCKGTKHI DVLFVPDINQNLLSVGQLIEKGFKVTFENEY
Sbjct: 477 VRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 536

Query: 421 CLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 480
           CLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTE
Sbjct: 537 CLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 596

Query: 481 LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 540
           LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY
Sbjct: 597 LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 656

Query: 541 YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 600
           YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK
Sbjct: 657 YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 716

Query: 601 FCEDSGIKHQLTAP 614
           FCEDSGIKHQLTAP
Sbjct: 717 FCEDSGIKHQLTAP 730

[Close]

BLAST of Cmc07g0204871 vs. NCBI nr
Match: KAA0064094.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 1218.8 bits (3152), Expect = 0.0e+00
Identity = 610/614 (99.35%), Postives = 612/614 (99.67%), Query Frame = 0


Query: 1   MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60
           MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI
Sbjct: 1   MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTMRSAYEIWNYLKSEYEGDERIKGMRVLNL 120
           KAQKEKKTKKSKAKACLFAAVSSTIFTRIMT+RSAYEIWNYLKSEYEGDERIKGMRVLNL
Sbjct: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERIKGMRVLNL 120

Query: 121 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180
           IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL
Sbjct: 121 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180

Query: 181 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 240
           ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS
Sbjct: 181 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 240

Query: 241 TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 300
           TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Sbjct: 241 TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 300

Query: 301 QGVEAKIAYQ-EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 360
           QGVEAKIAYQ EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK
Sbjct: 301 QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 360

Query: 361 VRIGNGDYISVKGKGTIAIASCKGTKHIHDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 420
           VRIGNGDYISVKGKGTIAIASCKGTKHI DVLFVPDINQNLLSVGQLIEKGFKVTFENEY
Sbjct: 361 VRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 420

Query: 421 CLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 480
           CLIKDAANQDIFKVKMKGKSFSLNPLEE+QSVFALKEDETQLWHKRVGHYHHQGLLQLTE
Sbjct: 421 CLIKDAANQDIFKVKMKGKSFSLNPLEEKQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 480

Query: 481 LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 540
           LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY
Sbjct: 481 LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 540

Query: 541 YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 600
           YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK
Sbjct: 541 YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 600

Query: 601 FCEDSGIKHQLTAP 614
           FCEDSGIKHQLTAP
Sbjct: 601 FCEDSGIKHQLTAP 614

[Close]

BLAST of Cmc07g0204871 vs. NCBI nr
Match: TYK00004.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 1218.8 bits (3152), Expect = 0.0e+00
Identity = 610/614 (99.35%), Postives = 612/614 (99.67%), Query Frame = 0


Query: 1    MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60
            MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI
Sbjct: 620  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 679

Query: 61   KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTMRSAYEIWNYLKSEYEGDERIKGMRVLNL 120
            KAQKEKKTKKSKAKACLFAAVSSTIFTRIMT+RSAYEIWNYLKSEYEGDERIKGMRVLNL
Sbjct: 680  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERIKGMRVLNL 739

Query: 121  IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180
            IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL
Sbjct: 740  IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 799

Query: 181  ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 240
            ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS
Sbjct: 800  ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 859

Query: 241  TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 300
            TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Sbjct: 860  TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 919

Query: 301  QGVEAKIAYQ-EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 360
            QGVEAKIAYQ EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK
Sbjct: 920  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 979

Query: 361  VRIGNGDYISVKGKGTIAIASCKGTKHIHDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 420
            VRIGNGDYISVKGKGTIAIASCKGTKHI DVLFVPDINQNLLSVGQLIEKGFKVTFENEY
Sbjct: 980  VRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 1039

Query: 421  CLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 480
            CLIKDAANQDIFKVKMKGKSFSLNPLEE+QSVFALKEDETQLWHKRVGHYHHQGLLQLTE
Sbjct: 1040 CLIKDAANQDIFKVKMKGKSFSLNPLEEKQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 1099

Query: 481  LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 540
            LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY
Sbjct: 1100 LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 1159

Query: 541  YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 600
            YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK
Sbjct: 1160 YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 1219

Query: 601  FCEDSGIKHQLTAP 614
            FCEDSGIKHQLTAP
Sbjct: 1220 FCEDSGIKHQLTAP 1233

[Close]

BLAST of Cmc07g0204871 vs. NCBI nr
Match: KAA0025843.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 1218.8 bits (3152), Expect = 0.0e+00
Identity = 610/614 (99.35%), Postives = 612/614 (99.67%), Query Frame = 0


Query: 1   MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60
           MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI
Sbjct: 1   MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTMRSAYEIWNYLKSEYEGDERIKGMRVLNL 120
           KAQKEKKTKKSKAKACLFAAVSSTIFTRIMT+RSAYEIWNYLKSEYEGDERIKGMRVLNL
Sbjct: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERIKGMRVLNL 120

Query: 121 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180
           IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL
Sbjct: 121 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180

Query: 181 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 240
           ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS
Sbjct: 181 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 240

Query: 241 TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 300
           TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Sbjct: 241 TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 300

Query: 301 QGVEAKIAYQ-EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 360
           QGVEAKIAYQ EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK
Sbjct: 301 QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 360

Query: 361 VRIGNGDYISVKGKGTIAIASCKGTKHIHDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 420
           VRIGNGDYISVKGKGTIAIASCKGTKHI DVLFVPDINQNLLSVGQLIEKGFKVTFENEY
Sbjct: 361 VRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 420

Query: 421 CLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 480
           CLIKDAANQDIFKVKMKGKSFSLNPLEE+QSVFALKEDETQLWHKRVGHYHHQGLLQLTE
Sbjct: 421 CLIKDAANQDIFKVKMKGKSFSLNPLEEKQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 480

Query: 481 LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 540
           LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY
Sbjct: 481 LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 540

Query: 541 YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 600
           YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK
Sbjct: 541 YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 600

Query: 601 FCEDSGIKHQLTAP 614
           FCEDSGIKHQLTAP
Sbjct: 601 FCEDSGIKHQLTAP 614

[Close]

BLAST of Cmc07g0204871 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 5.0e-47
Identity = 165/619 (26.66%), Postives = 275/619 (44.43%), Query Frame = 0


Query: 17  FDGDN-YQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKA 76
           F+GDN +  W  RM   +    + + ++ D + P        A +           +A +
Sbjct: 11  FNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADL---------DERAAS 70

Query: 77  CLFAAVSSTIFTRIMTMRSAYEIWNYLKSEYEGDERIKGMRVLNLIREFELQKMKETESI 136
            +   +S  +   I+   +A  IW  L+S Y           L L ++     M E  + 
Sbjct: 71  AIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTL---TNKLYLKKQLYALHMSEGTNF 130

Query: 137 KEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEIL 196
             +      +  Q+  LG   ++      +L S+P  ++   + + + K  T I L ++ 
Sbjct: 131 LSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGK--TTIELKDVT 190

Query: 197 NALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQISTRESSTYNKAGVK-- 256
           +AL   E+ R            P    + +    + + ++      R S+ Y ++G +  
Sbjct: 191 SALLLNEKMRKK----------PENQGQALITEGRGRSYQ------RSSNNYGRSGARGK 250

Query: 257 -----KGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHE-----AVICRNNNQQQGV 316
                K     C +CN+ GH    C   PN +  K    G +     A + +NN+     
Sbjct: 251 SKNRSKSRVRNCYNCNQPGHFKRDC---PNPRKGKGETSGQKNDDNTAAMVQNNDN---- 310

Query: 317 EAKIAYQEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIG 376
              + +  EEE+ + ++    G ES   W++D+  ++H T  ++LF      +   V++G
Sbjct: 311 --VVLFINEEEECMHLS----GPES--EWVVDTAASHHATPVRDLFCRYVAGDFGTVKMG 370

Query: 377 NGDYISVKGKGTIAIASCKG-TKHIHDVLFVPDINQNLLSVGQLIEKGFKVTFENE---- 436
           N  Y  + G G I I +  G T  + DV  VPD+  NL+S   L   G++  F N+    
Sbjct: 371 NTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRL 430

Query: 437 ----YCLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGL 496
                 + K  A   +++   +     LN  ++E SV         LWHKR+GH   +GL
Sbjct: 431 TKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEISV--------DLWHKRMGHMSEKGL 490

Query: 497 LQLTELALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSL 556
             L + +L        +  C  C FGKQ+R SF  SS R    L L+++DV GP    S+
Sbjct: 491 QILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESM 550

Query: 557 KGSLYYIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVS 614
            G+ Y++ FIDD +R  W++ LK K +V  VF KF A VE E+G K++ +RSDNG EY S
Sbjct: 551 GGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTS 576

[Close]

BLAST of Cmc07g0204871 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 150.2 bits (378), Expect = 7.6e-35
Identity = 149/617 (24.15%), Postives = 271/617 (43.92%), Query Frame = 0


Query: 17  FDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKAC 76
           FDG+ Y +W  R+ A +   D+ + V+       +P+    +  KA++        AK+ 
Sbjct: 11  FDGEKYAIWKFRIRALLAEQDVLKVVD-----GLMPNEVDDSWKKAER-------CAKST 70

Query: 77  LFAAVSSTIFTRIMTMRSAYEIWNYLKSEYEGDERIKGMRVLNLIREFELQKMKETESIK 136
           +   +S +      +  +A +I   L + Y   ER      L L +     K+    S+ 
Sbjct: 71  IIEYLSDSFLNFATSDITARQILENLDAVY---ERKSLASQLALRKRLLSLKLSSEMSLL 130

Query: 137 EYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILN 196
            +     ++ +++   G+  ++   +  +L+++P  ++  I+A+E   +   +TLA + N
Sbjct: 131 SHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSE-ENLTLAFVKN 190

Query: 197 ALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQISTRESSTYNKAGVKKGS 256
            L  QE +         +  + A  H N  NN  K    KN+++  +      +  K   
Sbjct: 191 RLLDQEIKIKNDHNDTSKKVMNAIVHNN--NNTYKNNLFKNRVTKPKKIFKGNSKYK--- 250

Query: 257 YPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQQGVEAK------IAYQ 316
              C HC ++GH    C+              H   I  N N++   + +      IA+ 
Sbjct: 251 -VKCHHCGREGHIKKDCF--------------HYKRILNNKNKENEKQVQTATSHGIAFM 310

Query: 317 EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKD----LKPTNITKVRIGNGD 376
            +E +   V         N  +++DSG ++H+ +D+ L+ D    + P  I   +   G+
Sbjct: 311 VKEVNNTSVM-------DNCGFVLDSGASDHLINDESLYTDSVEVVPPLKIAVAK--QGE 370

Query: 377 YISVKGKGTIAIASCKGTKHIHDVLFVPDINQNLLSVGQLIEKGFKVTFENEYCLIKDAA 436
           +I    +G + + +      + DVLF  +   NL+SV +L E G  + F+     I   +
Sbjct: 371 FIYATKRGIVRLRNDHEIT-LEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTI---S 430

Query: 437 NQDIFKVKMKGKSFSLNPLE-EEQSVFALKEDETQLWHKRVGHYHHQGLLQL-------T 496
              +  VK  G   ++  +  +  S+ A  ++  +LWH+R GH     LL++        
Sbjct: 431 KNGLMVVKNSGMLNNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSD 490

Query: 497 ELALDFPKLSEEISSCKACHFGKQNRKSFP--KSSWRATQKLQLIHTDVAGPQRTPSLKG 556
           +  L+  +LS EI  C+ C  GKQ R  F   K      + L ++H+DV GP    +L  
Sbjct: 491 QSLLNNLELSCEI--CEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDD 550

Query: 557 SLYYIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAE 614
             Y++ F+D FT  C  + +K+KS+V  +F  F A+ E     K+  +  DNG+EY+S E
Sbjct: 551 KNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNE 576

[Close]

BLAST of Cmc07g0204871 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 6.6e-31
Identity = 152/615 (24.72%), Postives = 265/615 (43.09%), Query Frame = 0


Query: 21  NYQVWAVRMEAYMEALDIWEAVEEDYEI-PALPDNPTMAQIKAQKEKKTKKSK-AKACLF 80
           NY +W+ ++ A  +  ++   ++    + PA        ++     +  ++ K   + + 
Sbjct: 30  NYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLIYSAVL 89

Query: 81  AAVSSTIFTRIMTMRSAYEIWNYLKSEYEGDERIKGMRVLNLIREFELQKMKETESIKEY 140
            A+S ++   +    +A +IW  L+  Y         ++   ++++     K T++I +Y
Sbjct: 90  GAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQW----TKGTKTIDDY 149

Query: 141 SVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNAL 200
              L+   +Q+ LLG        VE++L ++PE+++  I  +   KD T  TL EI   L
Sbjct: 150 MQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIA-AKD-TPPTLTEIHERL 209

Query: 201 QAQEQRRAMRQEGAV--EGALPAKHHENVRNNKKKKFFKKNQISTRESSTYNKAGVKKGS 260
              E +        V    A    H      N      + N+   R ++  +K       
Sbjct: 210 LNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNGNRNNRYDNRNNNNNSK------- 269

Query: 261 YPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVIC-------RNNNQQQGVEAKIAY 320
             P    +   HP     +    KC  C   GH A  C        + N QQ       +
Sbjct: 270 --PWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPPSPFTPW 329

Query: 321 QEEEEDQLFVATCFVGGE-SNESWLIDSGCTNHMTHDKELFKDLKP-TNITKVRIGNGDY 380
           Q         A   +G   S+ +WL+DSG T+H+T D       +P T    V + +G  
Sbjct: 330 QPR-------ANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGST 389

Query: 381 ISVKGKGTIAIASCKGTKHIHDVLFVPDINQNLLSVGQLIE-KGFKVTFENEYCLIKDA- 440
           I +   G+ ++++     ++H++L+VP+I++NL+SV +L    G  V F      +KD  
Sbjct: 390 IPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLN 449

Query: 441 ANQDIFKVKMKGKSFSLNPLEEEQ--SVFALKEDET--QLWHKRVGHYHHQGLLQ-LTEL 500
               + + K K + +   P+   Q  S+FA    +     WH R+GH     L   ++  
Sbjct: 450 TGVPLLQGKTKDELYEW-PIASSQPVSLFASPSSKATHSSWHARLGHPAPSILNSVISNY 509

Query: 501 ALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLK--GSL 560
           +L     S +  SC  C   K N+  F +S+  +T+ L+ I++DV     +P L      
Sbjct: 510 SLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDV---WSSPILSHDNYR 569

Query: 561 YYIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFD 614
           YY+ F+D FTR  W++ LK KS+V   F  FK  +EN    +I    SDNG E+V+    
Sbjct: 570 YYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVA--LW 615

[Close]

BLAST of Cmc07g0204871 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 5.2e-28
Identity = 132/494 (26.72%), Postives = 216/494 (43.72%), Query Frame = 0


Query: 140 VRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQ 199
           +R +   +Q+ LLG        VE++L ++P+ ++  I  +   KD T  +L EI   L 
Sbjct: 128 LRFITRFDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIA-AKD-TPPSLTEIHERLI 187

Query: 200 AQEQR-RAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQISTRESSTYNKAGVKKGSYP 259
            +E +  A+     V        H N   N       +NQ +  ++  YN    +  S+ 
Sbjct: 188 NRESKLLALNSAEVVPITANVVTHRNTNTN-------RNQNNRGDNRNYNNNNNRSNSWQ 247

Query: 260 PCSHCNKQGHPPFKCWRRPN---AKCTKCNQMGHEAVIC-------RNNNQQQGVEAKIA 319
           P S  ++  +      R+P     +C  C+  GH A  C          NQQQ       
Sbjct: 248 PSSSGSRSDN------RQPKPYLGRCQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTP 307

Query: 320 YQEEEEDQLFVATCFVGGESN-ESWLIDSGCTNHMTHDKELFKDLKP-TNITKVRIGNGD 379
           +Q         A   V    N  +WL+DSG T+H+T D       +P T    V I +G 
Sbjct: 308 WQPR-------ANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGS 367

Query: 380 YISVKGKGTIAIASCKGTKHIHDVLFVPDINQNLLSVGQLIEKG-FKVTFENEYCLIKDA 439
            I +   G+ ++ +   +  ++ VL+VP+I++NL+SV +L       V F      +KD 
Sbjct: 368 TIPITHTGSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDL 427

Query: 440 -ANQDIFKVKMKGKSFSLNPLEEEQ--SVFA--LKEDETQLWHKRVGHYHHQGLLQ-LTE 499
                + + K K + +   P+   Q  S+FA    +     WH R+GH     L   ++ 
Sbjct: 428 NTGVPLLQGKTKDELYEW-PIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISN 487

Query: 500 LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 559
            +L     S ++ SC  C   K ++  F  S+  +++ L+ I++DV       S+    Y
Sbjct: 488 HSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDV-WSSPILSIDNYRY 547

Query: 560 YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 614
           Y+ F+D FTR  W++ LK KS+V   F  FK+ VEN    +I  + SDNG E+V      
Sbjct: 548 YVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLR--D 595

[Close]

BLAST of Cmc07g0204871 vs. ExPASy Swiss-Prot
Match: P25601 (Putative transposon Ty5-1 protein YCL075W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5B PE=5 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-08
Identity = 33/100 (33.00%), Postives = 52/100 (52.00%), Query Frame = 0


Query: 304 EAKIAYQEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIG 363
           + + A Q   +  L + +  V    +  W+ D+GCT+HM HD+ +F     ++      G
Sbjct: 51  QGQTAGQITPKSWLCMLSSTVPATKSSEWIFDTGCTSHMCHDRSIFSSFTRSSRKDFVRG 110

Query: 364 NGDYISVKGKGTIAIASCKGTKHIHDVLFVPDINQNLLSV 404
            G  I + G GT+ I    GT  +HDV +VPD+  NL+SV
Sbjct: 111 VGGSIPIMGSGTVNI----GTVQLHDVSYVPDLPVNLISV 146

[Close]

BLAST of Cmc07g0204871 vs. ExPASy TrEMBL
Match: A0A5D3DMJ1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00670 PE=4 SV=1)

HSP 1 Score: 1220.3 bits (3156), Expect = 0.0e+00
Identity = 611/614 (99.51%), Postives = 612/614 (99.67%), Query Frame = 0


Query: 1   MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60
           MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI
Sbjct: 1   MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTMRSAYEIWNYLKSEYEGDERIKGMRVLNL 120
           KAQKEKKTKKSKAKACLFAAVSSTIFTRIMT+RSAYEIWNYLKSEYEGDERIKGMRVLNL
Sbjct: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERIKGMRVLNL 120

Query: 121 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180
           IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL
Sbjct: 121 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180

Query: 181 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 240
           ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS
Sbjct: 181 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 240

Query: 241 TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 300
           TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Sbjct: 241 TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 300

Query: 301 QGVEAKIAYQ-EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 360
           QGVEAKIAYQ EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK
Sbjct: 301 QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 360

Query: 361 VRIGNGDYISVKGKGTIAIASCKGTKHIHDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 420
           VRIGNGDYISVKGKGTIAIASCKGTKHI DVLFVPDINQNLLSVGQLIEKGFKVTFENEY
Sbjct: 361 VRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 420

Query: 421 CLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 480
           CLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTE
Sbjct: 421 CLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 480

Query: 481 LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 540
           LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY
Sbjct: 481 LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 540

Query: 541 YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 600
           YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK
Sbjct: 541 YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 600

Query: 601 FCEDSGIKHQLTAP 614
           FCEDSGIKHQLTAP
Sbjct: 601 FCEDSGIKHQLTAP 614

[Close]

BLAST of Cmc07g0204871 vs. ExPASy TrEMBL
Match: A0A5D3DBU0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00950 PE=4 SV=1)

HSP 1 Score: 1220.3 bits (3156), Expect = 0.0e+00
Identity = 611/614 (99.51%), Postives = 612/614 (99.67%), Query Frame = 0


Query: 1   MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60
           MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI
Sbjct: 117 MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 176

Query: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTMRSAYEIWNYLKSEYEGDERIKGMRVLNL 120
           KAQKEKKTKKSKAKACLFAAVSSTIFTRIMT+RSAYEIWNYLKSEYEGDERIKGMRVLNL
Sbjct: 177 KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERIKGMRVLNL 236

Query: 121 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180
           IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL
Sbjct: 237 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 296

Query: 181 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 240
           ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS
Sbjct: 297 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 356

Query: 241 TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 300
           TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Sbjct: 357 TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 416

Query: 301 QGVEAKIAYQ-EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 360
           QGVEAKIAYQ EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK
Sbjct: 417 QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 476

Query: 361 VRIGNGDYISVKGKGTIAIASCKGTKHIHDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 420
           VRIGNGDYISVKGKGTIAIASCKGTKHI DVLFVPDINQNLLSVGQLIEKGFKVTFENEY
Sbjct: 477 VRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 536

Query: 421 CLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 480
           CLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTE
Sbjct: 537 CLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 596

Query: 481 LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 540
           LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY
Sbjct: 597 LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 656

Query: 541 YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 600
           YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK
Sbjct: 657 YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 716

Query: 601 FCEDSGIKHQLTAP 614
           FCEDSGIKHQLTAP
Sbjct: 717 FCEDSGIKHQLTAP 730

[Close]

BLAST of Cmc07g0204871 vs. ExPASy TrEMBL
Match: A0A5D3E2V7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00370 PE=4 SV=1)

HSP 1 Score: 1218.8 bits (3152), Expect = 0.0e+00
Identity = 610/614 (99.35%), Postives = 612/614 (99.67%), Query Frame = 0


Query: 1   MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60
           MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI
Sbjct: 1   MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTMRSAYEIWNYLKSEYEGDERIKGMRVLNL 120
           KAQKEKKTKKSKAKACLFAAVSSTIFTRIMT+RSAYEIWNYLKSEYEGDERIKGMRVLNL
Sbjct: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERIKGMRVLNL 120

Query: 121 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180
           IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL
Sbjct: 121 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180

Query: 181 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 240
           ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS
Sbjct: 181 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 240

Query: 241 TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 300
           TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Sbjct: 241 TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 300

Query: 301 QGVEAKIAYQ-EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 360
           QGVEAKIAYQ EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK
Sbjct: 301 QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 360

Query: 361 VRIGNGDYISVKGKGTIAIASCKGTKHIHDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 420
           VRIGNGDYISVKGKGTIAIASCKGTKHI DVLFVPDINQNLLSVGQLIEKGFKVTFENEY
Sbjct: 361 VRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 420

Query: 421 CLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 480
           CLIKDAANQDIFKVKMKGKSFSLNPLEE+QSVFALKEDETQLWHKRVGHYHHQGLLQLTE
Sbjct: 421 CLIKDAANQDIFKVKMKGKSFSLNPLEEKQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 480

Query: 481 LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 540
           LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY
Sbjct: 481 LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 540

Query: 541 YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 600
           YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK
Sbjct: 541 YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 600

Query: 601 FCEDSGIKHQLTAP 614
           FCEDSGIKHQLTAP
Sbjct: 601 FCEDSGIKHQLTAP 614

[Close]

BLAST of Cmc07g0204871 vs. ExPASy TrEMBL
Match: A0A5D3BL45 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00490 PE=4 SV=1)

HSP 1 Score: 1218.8 bits (3152), Expect = 0.0e+00
Identity = 610/614 (99.35%), Postives = 612/614 (99.67%), Query Frame = 0


Query: 1    MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60
            MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI
Sbjct: 620  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 679

Query: 61   KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTMRSAYEIWNYLKSEYEGDERIKGMRVLNL 120
            KAQKEKKTKKSKAKACLFAAVSSTIFTRIMT+RSAYEIWNYLKSEYEGDERIKGMRVLNL
Sbjct: 680  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERIKGMRVLNL 739

Query: 121  IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180
            IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL
Sbjct: 740  IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 799

Query: 181  ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 240
            ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS
Sbjct: 800  ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 859

Query: 241  TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 300
            TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Sbjct: 860  TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 919

Query: 301  QGVEAKIAYQ-EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 360
            QGVEAKIAYQ EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK
Sbjct: 920  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 979

Query: 361  VRIGNGDYISVKGKGTIAIASCKGTKHIHDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 420
            VRIGNGDYISVKGKGTIAIASCKGTKHI DVLFVPDINQNLLSVGQLIEKGFKVTFENEY
Sbjct: 980  VRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 1039

Query: 421  CLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 480
            CLIKDAANQDIFKVKMKGKSFSLNPLEE+QSVFALKEDETQLWHKRVGHYHHQGLLQLTE
Sbjct: 1040 CLIKDAANQDIFKVKMKGKSFSLNPLEEKQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 1099

Query: 481  LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 540
            LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY
Sbjct: 1100 LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 1159

Query: 541  YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 600
            YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK
Sbjct: 1160 YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 1219

Query: 601  FCEDSGIKHQLTAP 614
            FCEDSGIKHQLTAP
Sbjct: 1220 FCEDSGIKHQLTAP 1233

[Close]

BLAST of Cmc07g0204871 vs. ExPASy TrEMBL
Match: A0A5A7VA39 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold99G001060 PE=4 SV=1)

HSP 1 Score: 1218.8 bits (3152), Expect = 0.0e+00
Identity = 610/614 (99.35%), Postives = 612/614 (99.67%), Query Frame = 0


Query: 1   MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60
           MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI
Sbjct: 1   MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTMRSAYEIWNYLKSEYEGDERIKGMRVLNL 120
           KAQKEKKTKKSKAKACLFAAVSSTIFTRIMT+RSAYEIWNYLKSEYEGDERIKGMRVLNL
Sbjct: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERIKGMRVLNL 120

Query: 121 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180
           IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL
Sbjct: 121 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180

Query: 181 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 240
           ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS
Sbjct: 181 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQIS 240

Query: 241 TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 300
           TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Sbjct: 241 TRESSTYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ 300

Query: 301 QGVEAKIAYQ-EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 360
           QGVEAKIAYQ EEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK
Sbjct: 301 QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITK 360

Query: 361 VRIGNGDYISVKGKGTIAIASCKGTKHIHDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 420
           VRIGNGDYISVKGKGTIAIASCKGTKHI DVLFVPDINQNLLSVGQLIEKGFKVTFENEY
Sbjct: 361 VRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEY 420

Query: 421 CLIKDAANQDIFKVKMKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 480
           CLIKDAANQDIFKVKMKGKSFSLNPLEE+QSVFALKEDETQLWHKRVGHYHHQGLLQLTE
Sbjct: 421 CLIKDAANQDIFKVKMKGKSFSLNPLEEKQSVFALKEDETQLWHKRVGHYHHQGLLQLTE 480

Query: 481 LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 540
           LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY
Sbjct: 481 LALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLY 540

Query: 541 YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 600
           YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK
Sbjct: 541 YIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDK 600

Query: 601 FCEDSGIKHQLTAP 614
           FCEDSGIKHQLTAP
Sbjct: 601 FCEDSGIKHQLTAP 614

[Close]

BLAST of Cmc07g0204871 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-10
Identity = 82/412 (19.90%), Postives = 168/412 (40.78%), Query Frame = 0


Query: 15  LIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPD-NPTMA------QIKAQKEKK 74
           ++ D  +Y++WA   ++ +    +W+ V     +P  P  NP +A      ++   ++  
Sbjct: 10  VVSDQFDYEIWAPITKSTLIEQGLWDVVVNG--VPQDPSKNPELAATIQPEELSKWRDFV 69

Query: 75  TKKSKAKACLFAAVSSTIFTRIMTMRSAYEIWNYLK--SEYEGDERIKGMRVLNLIREFE 134
            K +KA   L ++++ ++F + ++  SA ++W+ L+  +E     R++ + +  L ++ E
Sbjct: 70  VKDAKALQILQSSLTDSVFRKTLSASSAKDVWDLLRKGNEQATIRRLEQVTIRRLEKQLE 129

Query: 135 LQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKD 194
             KM + ES   Y  + L+I  ++        D  I + +  ++   F+   S LE   D
Sbjct: 130 DLKMVDKESGSSYLDKALEILERLGRAKLEKSDYEICKNVFTTLSGSFDGLDSMLEELID 189

Query: 195 LTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKNQISTRES- 254
           + ++T   ++                                     +++ ++ ST E+ 
Sbjct: 190 VHKMTSKSLVEYF----------------------------------YYRVHESSTEEAI 249

Query: 255 -STYNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQQGV 314
                   +K  S   C  C K  H    C  R                    + +++  
Sbjct: 250 FGLLKDLRLKSKSEKWCGLCYKNNHNQEDCKFR-----------------IHTDKEEKED 309

Query: 315 EAKIAYQEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIG 374
           E  + Y+ E    L   T       ++ W+I      +MT   + F  L  T    V   
Sbjct: 310 EIVVDYRLETVPNLGAKT-----YDDDIWIIHKMAPINMTPYVKYFTTLDRTFKATVGTV 363

Query: 375 NGDYISVKGKGTIAIASCKGTKH-IHDVLFVPDINQNLLSVGQLIEKGFKVT 415
           +G  + V+GKG + I   +G K  I +V+FVP +N+N+LS G+++ K + ++
Sbjct: 370 DGTVLLVEGKGDVKIRMKEGKKKTIRNVIFVPGLNRNVLSFGKMVSKRYSIS 363

[Close]

BLAST of Cmc07g0204871 vs. TAIR 10
Match: AT3G20980.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 63.9 bits (154), Expect = 5.1e-10
Identity = 48/140 (34.29%), Postives = 66/140 (47.14%), Query Frame = 0


Query: 303 VEAKIAYQEEEEDQLFVATCFVGGESNES-WLIDSGCTNHMTHDKELFKDLKPTNITKVR 362
           V AK  +    E    VA CF     +E+ WLI S  +NHMT   + F  L  +   KV+
Sbjct: 239 VSAKDLWDLLNEVPDHVAECFSKYTFHENIWLISSTNSNHMTPHVKFFTTLDRSRKCKVK 298

Query: 363 IGNGD-----YISVKGKGTIAIASCKGTKHIHDVLFVPDINQNLLSVGQLIEKGFKVTFE 422
             +GD        V+G G +   + +G K I +VL+VP I  N LSV QL   GF+V+ E
Sbjct: 299 FISGDKSETTVAMVEGIGDVTFITNEGNKTIKNVLYVPGIEGNALSVSQLKRNGFEVSME 358

Query: 423 NEY-CLIKDAANQDIFKVKM 436
               C + D     +F   M
Sbjct: 359 RRTGCFVWDRTTGKMFGKNM 378

The following BLAST results are available for this feature:

BLAST of Cmc07g0204871 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ95793.1	0.0e+00	99.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK21117.1	0.0e+00	99.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0064094.1	0.0e+00	99.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK00004.1	0.0e+00	99.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0025843.1	0.0e+00	99.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc07g0204871 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.0e-47	26.66	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	7.6e-35	24.15	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	6.6e-31	24.72	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	5.2e-28	26.72	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25601	1.6e-08	33.00	Putative transposon Ty5-1 protein YCL075W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc07g0204871 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DMJ1	0.0e+00	99.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DBU0	0.0e+00	99.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3E2V7	0.0e+00	99.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BL45	0.0e+00	99.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VA39	0.0e+00	99.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc07g0204871 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21000.1	1.3e-10	19.90	Gag-Pol-related retrotransposon family protein	[more]
AT3G20980.1	5.1e-10	34.29	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 17..43 e-value: 1.0E-11 score: 44.3
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 67..207 e-value: 9.7E-28 score: 96.7
None	No IPR available	GENE3D	4.10.60.10		coord: 257..307 e-value: 4.7E-5 score: 25.2
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 5..277
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 280..352
None	No IPR available	PANTHER	PTHR35317:SF13	ZINC FINGER, CCHC-TYPE-RELATED	coord: 5..277 coord: 280..352
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 509..613 e-value: 1.5E-21 score: 78.6
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 515..613 e-value: 8.0E-16 score: 58.2
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 504..613 score: 15.404733
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 441..502 e-value: 5.8E-10 score: 38.9
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 511..613
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 255..298

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0204871.1	Cmc07g0204871.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0015074	DNA integration
biological_process	GO:0007165	signal transduction
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding