Cmc07g0192461 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0192461
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	50S ribosomal protein L29, chloroplastic
Location	CMiso1.1chr07: 13186622 .. 13188954 (-)
RNA-Seq Expression	Cmc07g0192461
Synteny	Cmc07g0192461

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATGTACTATGGGCATTTGCGTAAATAGGGGTAAGAGGGGTAATAGGGGATCTCGAAAAGTAACAATAGAAGTGCTGGGAGCTTATCTCATTCTTTAGTAGCAGAGCGCTCTTACAAACTTTGAAGATGATAAACCTTTCAGTTGCTTCTTTACCTTCGGCCCTTCCAATCCCTTCAAAATTTCTTAATTCGACTTCCAAATCCTTCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTTGCGTTCCTCCTAAAACTGCAACTACTGGAGGAGGCCGCAATTCATCGGTGGTAATGATGGCCAAGAGGGAGGAGGAATTGAAGGATATAAGGGCCAAAACTACTGAGGAAATAAACGAAGAGGTCGTCGATCTTAAGGGTGAACTTCTTATGCTTCGTCTTCAAAAATCAGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGGTACTTTTTTCCCCTTGTTGATGGATTGATTCTTAATTAATTTTGAGTTCAATAGCCGTTTGTGGGAATGATTCTAGAAACATGTATGTTTGTGGGAATCAACTTAGGATGCAGATTTGAGTTCACAGCCGAAAGAAATTTACCAAAACAATATTTCACCATGTTGGGAAATTTTTACAAAAGTTGCATTTTAGATTCATTTAGAATGTGCTTTGGAACGTAGAGGTCCAGTTAGAATAAGAAAATGTAAACTGAAACTGGGATTTCTAACGTTAACGTCATATTCTACTAAGATAAACTCTAAATAGCTCCCTCATAGATTTTACATTTTTGATAAAATCGGCACCATCTTCGAGAAACCCCTCGTATGTCTTCATGTTAACATTTTGTATAAGATTCCCAAAATGCCTGAAGCTTGAATGAGTCTATAGATGTGGAAAGCATTTGGGTTTAGAACGACTTGTCTTCTTATATGAAGTTGGTTAATGTAAATAACCTAATTCTATTCTGATCATGGAAGCTCACAATTTAGTGCATAAAAGAGAGAGTTTGCCATTTGACCATATGTAGCCTTCTCCTGACTTTTACACCAAAACTTCATCATGCTTGGTGCTTAGTCTGGATATTGAAATTATCCGATGGGCTTCTCTATGTTCCACTAAACCAAAGCCCTCAACGATTAGAAATTGTTGAATAGCAAATAATTTATTTACACATTATGAATTTAGTAAGGCTCGCAGATTTTTTTAATTCCCTTATGATCATGAATTGCTGGAGAGATGGTTAACACTGTAATAGTGGTAAGACTTGCCCTTTCTCATAGTTTATGGTTTCAAGTCAAGTATGAGATTTAGGTAGCAAACTTTTTGCATCTGTAGTAATCGCATGGCTTCATGATAAGATCTTGAGTTGTTTGTAGTGACCCTCTAAAGTATTGTTTCAAAGCCTCTAACTGGGTAACTTAGTACTCCAAGGCCAGCTTTATGAAAGATTATTCAATGAGACCGCCACAATGTGTTGTCTCGTAATAACCGTTCAATGAGGATCTAATAATTGGTCGATCCCCTAATAACCACTTTATATAAATTTGAACTATTTCTCTCTGCATCTAAGGGTGAAAACTACCACCTACATCGTGATGGTCTAACTGAATAATTTCTCCGATATTGAACTAGGTGAAGCCTTCTTAGAGATTAGTGGTGAGTTCATGAACATAGGAATTGGCCTTGACAATCCTAGTCGTCAGTTAACCTGACTGATATATATGCAGTGGTATGATAATGTGGGACAATTAGGAAGTTTGTATTATATATTGCTTGTCTTCTCTCTTTATTGTATTTATTTATCTTCACATACCTTCAGATTGCAACATCGTAGCCAATACATCCAATGTTTGGTCTTGCCTAACAAGTTTCCTTTCGACACTATTTTTGAACCATTTATTGTTGTTTGTCCGGTGATAGATTTCTCGGATGCTAACAGTAAAACGTGAGAGAGAGATTGAAGAGGGTGTGGGCAAAAGGATGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACCACCTCCATCTCTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCTTGAACGAATCAGATACATGCTCTCATTCAATCTTTATGAGTTTGAAGTTGTTGAGATTTGAGAACGCTGTTTAAGCAACACTTTAGAAAAAAAAAAATTTCCAACTTTAAACATTCTGATTCTTGTACTTAGCTTATGCACAAATGGAAATAGATTTCGAGTGGATCATGTTGAATTTATATGCTTTCACTCCTTAATTTAAATTAGATAAAAGGTATGTGGGAATGATTTTG

mRNA sequence

GGATGTACTATGGGCATTTGCGTAAATAGGGGTAAGAGGGGTAATAGGGGATCTCGAAAAGTAACAATAGAAGTGCTGGGAGCTTATCTCATTCTTTAGTAGCAGAGCGCTCTTACAAACTTTGAAGATGATAAACCTTTCAGTTGCTTCTTTACCTTCGGCCCTTCCAATCCCTTCAAAATTTCTTAATTCGACTTCCAAATCCTTCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTTGCGTTCCTCCTAAAACTGCAACTACTGGAGGAGGCCGCAATTCATCGGTGGTAATGATGGCCAAGAGGGAGGAGGAATTGAAGGATATAAGGGCCAAAACTACTGAGGAAATAAACGAAGAGGTCGTCGATCTTAAGGGTGAACTTCTTATGCTTCGTCTTCAAAAATCAGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGATTTCTCGGATGCTAACAGTAAAACGTGAGAGAGAGATTGAAGAGGGTGTGGGCAAAAGGATGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACCACCTCCATCTCTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCTTGAACGAATCAGATACATGCTCTCATTCAATCTTTATGAGTTTGAAGTTGTTGAGATTTGAGAACGCTGTTTAAGCAACACTTTAGAAAAAAAAAAATTTCCAACTTTAAACATTCTGATTCTTGTACTTAGCTTATGCACAAATGGAAATAGATTTCGAGTGGATCATGTTGAATTTATATGCTTTCACTCCTTAATTTAAATTAGATAAAAGGTATGTGGGAATGATTTTG

Coding sequence (CDS)

ATGATAAACCTTTCAGTTGCTTCTTTACCTTCGGCCCTTCCAATCCCTTCAAAATTTCTTAATTCGACTTCCAAATCCTTCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTTGCGTTCCTCCTAAAACTGCAACTACTGGAGGAGGCCGCAATTCATCGGTGGTAATGATGGCCAAGAGGGAGGAGGAATTGAAGGATATAAGGGCCAAAACTACTGAGGAAATAAACGAAGAGGTCGTCGATCTTAAGGGTGAACTTCTTATGCTTCGTCTTCAAAAATCAGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGATTTCTCGGATGCTAACAGTAAAACGTGAGAGAGAGATTGAAGAGGGTGTGGGCAAAAGGATGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACCACCTCCATCTCTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCTTGA

Protein sequence

MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVKREREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

Homology

[Close]

BLAST of Cmc07g0192461 vs. NCBI nr
Match: XP_008455595.1 (PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis melo] >KAA0053400.1 50S ribosomal protein L29 [Cucumis melo var. makuwa] >TYK15880.1 50S ribosomal protein L29 [Cucumis melo var. makuwa])

HSP 1 Score: 311.2 bits (796), Expect = 5.4e-81
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA
Sbjct: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK
Sbjct: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 171
           REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]

BLAST of Cmc07g0192461 vs. NCBI nr
Match: XP_004137190.1 (50S ribosomal protein L29, chloroplastic [Cucumis sativus] >KGN53650.1 hypothetical protein Csa_015109 [Cucumis sativus])

HSP 1 Score: 290.0 bits (741), Expect = 1.3e-74
Identity = 158/170 (92.94%), Postives = 165/170 (97.06%), Query Frame = 0


Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           MINLS+ASLPS LPIPSKFLNSTSKS FN LQIRFPFSF +PPKTATTG GRNSSVVMMA
Sbjct: 1   MINLSIASLPSTLPIPSKFLNSTSKSSFNALQIRFPFSFRLPPKTATTGRGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KRE+ELKDIR+KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTV+
Sbjct: 61  KREDELKDIRSKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVR 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 171
           REREIEEGVGKR+SRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]

BLAST of Cmc07g0192461 vs. NCBI nr
Match: XP_022941582.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata] >KAG6600658.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031295.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 270.8 bits (691), Expect = 8.1e-69
Identity = 152/170 (89.41%), Postives = 162/170 (95.29%), Query Frame = 0


Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           MINLS+AS PS++  PSKFL+STSKS FNG QIRFPFSF VPPKTA+T GGRNSSVVMMA
Sbjct: 1   MINLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTAST-GGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KREEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTVK
Sbjct: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 171
           REREIEEGVGKR+SRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of Cmc07g0192461 vs. NCBI nr
Match: XP_022977189.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 269.6 bits (688), Expect = 1.8e-68
Identity = 151/170 (88.82%), Postives = 162/170 (95.29%), Query Frame = 0


Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           M+NLS+AS PS++  PSKFL+STSKS FNG QIRFPFSF VPPKTA+T GGRNSSVVMMA
Sbjct: 1   MMNLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTAST-GGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KREEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTVK
Sbjct: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 171
           REREIEEGVGKR+SRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of Cmc07g0192461 vs. NCBI nr
Match: XP_023531622.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.5 bits (685), Expect = 4.0e-68
Identity = 151/170 (88.82%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           MINLS+AS PS++  PSKFL+STSKS FNG QIRFPFSF VPPKTA+T GGRNS VVMMA
Sbjct: 1   MINLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTAST-GGRNSLVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KREEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTVK
Sbjct: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 171
           REREIEEGVGKR+SRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of Cmc07g0192461 vs. ExPASy Swiss-Prot
Match: Q9FJP3 (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL29 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.9e-44
Identity = 105/168 (62.50%), Postives = 132/168 (78.57%), Query Frame = 0


Query: 1   MINLSVASLPSALPIPSKFLNSTS-KSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMM 60
           M++LS+A+  +A        ++TS  S F+G++I+   S  VP     +      SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTV 120
           +KRE ELK+IR+KTTE++ EEVVDLKGEL MLRLQKSARNEFKSS+FRRM+K+++RMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE 168
           KREREI+EG+ KR+SRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

[Close]

BLAST of Cmc07g0192461 vs. ExPASy Swiss-Prot
Match: P82248 (50S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 PE=1 SV=2)

HSP 1 Score: 154.8 bits (390), Expect = 8.5e-37
Identity = 96/168 (57.14%), Postives = 122/168 (72.62%), Query Frame = 0


Query: 3   NLSVASLPSALPIPSKFLNSTSKSFFNGLQI-RFPFSFCVPPKTATTGGGRNSSVVMMAK 62
           +LS     S L  P K    T KS F+GL++     S  +  +  T      SSVV+M K
Sbjct: 6   SLSSTPCSSGLTSPPKSTLLT-KSSFHGLRLPSVNLSSSLRLRVQTP----PSSVVVMVK 65

Query: 63  REEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVKR 122
           +E+ELK++R KT E++NEE++ LKGEL MLRLQ+SAR  FK S+F RMRKR++RMLTVKR
Sbjct: 66  KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR 125

Query: 123 EREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKS 170
           EREIE+GVGKR+SRKLD+ WK+SIVVRPPPSLKKL+E+  A  EAEK+
Sbjct: 126 EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 168

[Close]

BLAST of Cmc07g0192461 vs. ExPASy Swiss-Prot
Match: Q9SWI6 (50S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.7e-35
Identity = 79/108 (73.15%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 52  RNSSVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRK 111
           R +++V MAKRE+EL++IRA TTE++ EEVVDLKGEL +LRL++SAR EFK+SEF RMRK
Sbjct: 54  RAAAMVAMAKREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRK 113

Query: 112 RISRMLTVKREREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREE 160
           RI+RMLTVKREREIE+G+ KR+SRKLDRKWK+SIVVRPPPSL+  +EE
Sbjct: 114 RIARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161

[Close]

BLAST of Cmc07g0192461 vs. ExPASy Swiss-Prot
Match: B8HMR2 (50S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rpmC PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.3e-04
Identity = 20/63 (31.75%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 65  ELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVKRERE 124
           ++KD+   +  E+  +++DLK +L  LRLQK+ R E K  +F+ +R ++++++T++R+R+
Sbjct: 5   KMKDLLDLSDAEVETQILDLKRQLFQLRLQKATRQEVKPHQFKHLRHQLAQLMTLERQRQ 64

Query: 125 IEE 128
           + +
Sbjct: 65  LTQ 67

[Close]

BLAST of Cmc07g0192461 vs. ExPASy TrEMBL
Match: A0A5D3CWZ4 (50S ribosomal protein L29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00600 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.6e-81
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA
Sbjct: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK
Sbjct: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 171
           REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]

BLAST of Cmc07g0192461 vs. ExPASy TrEMBL
Match: A0A1S3C2I8 (50S ribosomal protein L29, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495732 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.6e-81
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA
Sbjct: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK
Sbjct: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 171
           REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]

BLAST of Cmc07g0192461 vs. ExPASy TrEMBL
Match: A0A0A0KVL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095600 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.3e-75
Identity = 158/170 (92.94%), Postives = 165/170 (97.06%), Query Frame = 0


Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           MINLS+ASLPS LPIPSKFLNSTSKS FN LQIRFPFSF +PPKTATTG GRNSSVVMMA
Sbjct: 1   MINLSIASLPSTLPIPSKFLNSTSKSSFNALQIRFPFSFRLPPKTATTGRGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KRE+ELKDIR+KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTV+
Sbjct: 61  KREDELKDIRSKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVR 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 171
           REREIEEGVGKR+SRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]

BLAST of Cmc07g0192461 vs. ExPASy TrEMBL
Match: A0A6J1FMW5 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446894 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.9e-69
Identity = 152/170 (89.41%), Postives = 162/170 (95.29%), Query Frame = 0


Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           MINLS+AS PS++  PSKFL+STSKS FNG QIRFPFSF VPPKTA+T GGRNSSVVMMA
Sbjct: 1   MINLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTAST-GGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KREEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTVK
Sbjct: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 171
           REREIEEGVGKR+SRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of Cmc07g0192461 vs. ExPASy TrEMBL
Match: A0A6J1IQR3 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477475 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 8.7e-69
Identity = 151/170 (88.82%), Postives = 162/170 (95.29%), Query Frame = 0


Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           M+NLS+AS PS++  PSKFL+STSKS FNG QIRFPFSF VPPKTA+T GGRNSSVVMMA
Sbjct: 1   MMNLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTAST-GGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KREEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTVK
Sbjct: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 171
           REREIEEGVGKR+SRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of Cmc07g0192461 vs. TAIR 10
Match: AT5G65220.1 (Ribosomal L29 family protein )

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-45
Identity = 105/168 (62.50%), Postives = 132/168 (78.57%), Query Frame = 0


Query: 1   MINLSVASLPSALPIPSKFLNSTS-KSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMM 60
           M++LS+A+  +A        ++TS  S F+G++I+   S  VP     +      SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTV 120
           +KRE ELK+IR+KTTE++ EEVVDLKGEL MLRLQKSARNEFKSS+FRRM+K+++RMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE 168
           KREREI+EG+ KR+SRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

The following BLAST results are available for this feature:

BLAST of Cmc07g0192461 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455595.1	5.4e-81	100.00	PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis melo] >KAA0053400.1...	[more]
XP_004137190.1	1.3e-74	92.94	50S ribosomal protein L29, chloroplastic [Cucumis sativus] >KGN53650.1 hypotheti...	[more]
XP_022941582.1	8.1e-69	89.41	50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata] >KAG6600658.1...	[more]
XP_022977189.1	1.8e-68	88.82	50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima]	[more]
XP_023531622.1	4.0e-68	88.82	50S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cmc07g0192461 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJP3	1.9e-44	62.50	50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
P82248	8.5e-37	57.14	50S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 P...	[more]
Q9SWI6	4.7e-35	73.15	50S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1	[more]
B8HMR2	7.3e-04	31.75	50S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39...	[more]

BLAST of Cmc07g0192461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CWZ4	2.6e-81	100.00	50S ribosomal protein L29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3C2I8	2.6e-81	100.00	50S ribosomal protein L29, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495732...	[more]
A0A0A0KVL7	6.3e-75	92.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095600 PE=3 SV=1	[more]
A0A6J1FMW5	3.9e-69	89.41	50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1IQR3	8.7e-69	88.82	50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Cmc07g0192461 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65220.1	1.3e-45	62.50	Ribosomal L29 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 153..170
None	No IPR available	PANTHER	PTHR10916	60S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29	coord: 1..170
None	No IPR available	PANTHER	PTHR10916:SF1	SUBFAMILY NOT NAMED	coord: 1..170
None	No IPR available	CDD	cd00427	Ribosomal_L29_HIP	coord: 67..123 e-value: 3.32963E-15 score: 64.4311
IPR001854	Ribosomal protein L29/L35	PFAM	PF00831	Ribosomal_L29	coord: 67..123 e-value: 2.7E-13 score: 49.6
IPR001854	Ribosomal protein L29/L35	TIGRFAM	TIGR00012	TIGR00012	coord: 68..123 e-value: 1.8E-14 score: 51.4
IPR001854	Ribosomal protein L29/L35	HAMAP	MF_00374	Ribosomal_L29	coord: 64..123 score: 12.523397
IPR036049	Ribosomal protein L29/L35 superfamily	GENE3D	1.10.287.310		coord: 65..128 e-value: 1.2E-13 score: 52.8
IPR036049	Ribosomal protein L29/L35 superfamily	SUPERFAMILY	46561	Ribosomal protein L29 (L29p)	coord: 66..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0192461.1	Cmc07g0192461.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome