Cmc07g0192451 (gene) Melon (Charmono) v1.1

Overview
NameCmc07g0192451
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon 297 family
LocationCMiso1.1chr07: 13142445 .. 13147864 (+)
RNA-Seq ExpressionCmc07g0192451
SyntenyCmc07g0192451
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCACAGAGTAACACCTATAACTCTGGTTGGAGGGACCATCCAAATCTCAAGTGGGGACCTTAAGAATCAAAACCTACCAACACTTCTTCTTCCTCCTAATCATCACAAGGTACGTACTTAGAGGAAATAATCTCCAGGTTAGCTCTTAGCTCAAACAATTTTAAAACTGATTTGAGAAAAACTTAGTTAAGTTGAGTGAGCAAAACTGTTAATTCAATTGAAGCCATGAAAAATGATATAGAAACCATGAAAGCATCCATTTCTGAGTTAGGAGATAAACTTAATCAATTAGCACATGCGTTCTTAAAATGGAAGGGAAAGACAAACTTCTCGCTCAACCCAACCATGAAAATGTGAGTGATATTACTTTAAGAAGTGGCAAAAATACTACTAGAAATTTGGGATTTAAAGATGCAAAATTTGCATCATAAAGAGTTTGAATGACACAATTTTTGCGTCATTAAAGCCCCTGTCAAGAAAGATATTTAACGATACTTTGAAAAAAGCGTCGTTAAATATGCTTAGATGACACCAAGATTGCATAATTAATATCCTTACATTAACGCAATAAATATGTCACCGTTTATCTATAACTCGACACCAATATATTGTCATTAATACCCTTACACTGACGCTTTAAATGTGTCACCATTATCTATAACTTGACCCAATATATTGCCATTAGTACCTTTACATTGATGCTTTAAATGTGTCACCATTATCTATCACTTGACACAAATATATTGTCATTAATACTATTACATTGACAATTTAAATGTGTCACCGTTATCTATCACTTGACACCAATATATTGTCACTAATACTCTTATAATGACGCTTTAAGTGTGTCATCTTTCAATATACCTCGACACTAATATATTGTCGTTGTAAATGTTTCGTTACACAAAATTGTTGTCAAGAAATGTGCTTTAACGACACTATTTCTGTTTAATAAAGGCTTATATGTCGACACATGTTTGGTGCCGTTATTCTTCATTTTTGCAACACATATTTTTCTATCATATATTTCTTCTTTCAAAAAAATTAAATACTAAATTTCAGCATTAGCCACATATGTTTGGAAAGATATTTATATTGATAATAAAAAATATAACTTACATTATCGGTAAATATTTTACAATAATCCAAAAGATAAATTTACTATAATATTACATGTATATGTGACCTAATCTAATCAAACTGACGCATAAATGAGAACTTGATCGATACCATGATCCATGGATTCTTCAACTACCTGCAAATTTGAAAAAAATGAACCTTAGCCAACATTCATTACGGAAAATGCATAAGCATAAGCATAGGCATAAACATTAAGTACATGCCAAACAAAAATCACCTTCTTAATAAGCAGACTAATAAACTTTTCAAAATAAGCGCCCAAAGTTCATACAACCAAGGTTTTTAATAAAAGACCTATAAGGAATGCAGAAGATTAAAAAAAAAAAAACATCTACTACGTAAGCATAGTATATAAATGTTGCAAATGTAAGTTTCGATTCAATCTTTATAGACCAAACAATGTTCTAGTTTGCATCAAGTTGAAACTTAGCATAAACTTACCCTTAGCCCCCCTCCTCCAAAGTAATTACAAAACAACATGATTCCTATAACATATGTCTAAGTGGATTGAACAAAATAGCTTTTCAATGACTACCATAACTGCAGAATATAGTCAACACAACAAAGTATCAAGTTCCTAAATACATGTCAACACGATTCCTAAAACATATGTCTAAGCGGAACGCACAAAATAGATTTTCAATGGCTACCACTGTAGGATAGTCAAAGCAACATTCCTAAGTACATGTTAACATGATTCCTAAAATAAAATAGTTAAGTTACGTTACAAAACATAAAGCACGTACCTCTTTCTTTTACTAGATTCCCACCCCCATATCTTGATTACCCTCCACAGAGGCTTCTTCTTATGCAAGTTCGGAAGCCCTAATAATGGATAGCAAACTACGTAAGTTATACAATTATTATTTCATATGCAATATATTAACTCATTATTTTGTCCCTAACGGAGTTCATGATAAATTAAGTTAACATCATTCTTAAAGTTATTCCAAGAACAAAAGTTGCAACCAATGTTATGAGGAAACAACAAACAATGTAACAAATAACAAACACTTTAAAATTCTGCATACTCCAAAAATCTAAATAATACATAAAATCCAGTTGCAAAATAAGTAAGTTTCAAAACTTTCTTACCATGAGGATTGGGAAGTGTTGCTATCAAAGATCTCTTGTAGTTCCTCTTCTATCAAATTCAACTCAAAAAATCGAGTAGACAATATATTGATCTAAATAATCCTTGTTTTTTCTTGAGAACCATAGCACAAGAAAACATCATCATTGACATACAACACATAAAAAAATCTTTAATGGCTTAAATTGAGAAGTCCTAGTTTTGTATCTTATCCTCTTATAGTTTTTAATTTAGTCTATCACTATTCATAAATGTTAAAATTAGATGATAATAAAACTTACATAGCATGATACTTCATAGATTGACAGAAGTTCGAAAAAGCAAAAAAAGTCATCTAAGTGAGAAAAAAATGAATTTTTTTTACTCATTGGAGAATGTAATATACTATTTGCAATCCAAGAACCATAAAATTCATAAATGAACATTACTTCTTTTCTGTCTCAAATTTTTATATCCATATGGCAAAAAAAAAATGAATTTGCAATTATAGAAATTGAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGAAATTGAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATTATAATAATTATTATTATTATTATTATTATTATTATTATTATTATTATCAAAACAATGTGAAACTTAACAAATACAGGTTGGAAAATCATACAGATTGACAAATGATTTGGCAAATAATGCAGCAAACAATATAGTTGAAAAATAATACAGGTTGGAAATAATATACAGATTGAGAAATAATATAATATACAGGTTGAGAAATACTATATTGGAAATAATATACAGATTGAGAATAAATGTATCGGAAATAATATAAAATAATATATCAGAAATAATATAAAATAATATATCGAAAATAATATAAAATAATATATCGAAAATAATATAAAAGAATATATCGAAAATAATATAAAAGAATAGATCGGAAATAATATAAAAGAATAGATCGGAAATAATATAAAAGAATAGATCGGAAATAATATAAAATAATAGATCGGATATAATATAAAATAATAGAGCGGATATAATATAAAATAATATATCGGATATAATATAAAATAATATATCGGATATAATATAAAATAATATATCGGATATAATATAAAATAATATATCGGATATAATATAAAATAATATATCGGATATAATATAAAATAATATATCGGATATAATATAAAATAATATATCGGATATAATATAAAATAATATATCGGATATAATATAAAATAATATATCGGCTATAATATAAAATAATATATCGGCTATAATATAAAATAATATATCGGAAAAATAATATAAAATAATATATCGGATATAATATAAAATAATATTTCGGATATAATATATCAAACCTAACAAACTATTTTATCTTTTACAAGTCTAATCAATTAATAAATAGTAAATCAAAAAGATTAACAACAGCCAAGTTAAATGAATTGGCTTTAAACCTGACAAATTTAAAGAATATAGAATAAAATGGCCTAAATCTAACAGATTTAAACAAATCAATTGGTCTACTAAATTTGGAGAACGATAAATTCAATTGGCCTAAATCTGCTAAATTTTATGCAACAATAAACTTAATTGACCTAAATTTGAAAGCACAATAAATCCAATTGACCTAAGCCTAACAGACCTAATCTAACAAAAATTAAAGTCACCTTAAAATTAATTAACAAAATTACAACAAAAACAAATTTGACAGAATAGTTTTCGCTTTTTTTCACCCCTCAAAAGGGAAGTTACCTTTGACAGAATAGTTTCCTTAGCTTTTTTACCCTATCTCGATCGTACCTATCATTCTTTGTTTTTATTGGGAAGCGAGGACAGATCGTGTTTTATGAGTTGAGAAGGTGGGAGTGAGAGAGAAAATTGGGTTAGTTGAGGGAAAATAGAGAGGAGAGTGGGGAAGTGGGAGTGGGAGAGAAAATTGGGTGAGTTGATGGAAAATAGGAAAGAGACTGATATTCATTTTTTTTGTTTTTGTTTTTAAAAAGAAAAATTAAATTCAAATTTAAATCAAACTTTCAAAATAAAATAATAAATAAATAAATAAATAAAATAAAATAAAATAAAAAAATAAAAAAATAAAAATAAAAAAATAAAAATAAAAAATAAAAAAAATAAATAAAGGACAAAATGTTGTATCTACAACCTCTTAGAAGATTACCCCTCCATTGGATCAAAAAACATTTCTTCTAGACAAAGATAATAAATTGAATTTTGCACTTTAATTTTCTAAACAAAATGTATCTTGCATACTAATTAAACAATTAAGAGAAAATTAAAAGATTGTTTCATAGAGATCGTATGGAATTAAATTCGTTCTTAAACAAAAATTAAAGAATCAACATGCTAAATTAGGAAAAAAATGGAAGAAACTCTTAAAGAAATTGAATAACTATGATCCTCTTACCTCTTAGAAAATTACCCCTCTATTAGAATAAAAGATTGATGGAATATTTTGGAATTTTTTCTCCATTAAATAAAAGATTGTCCGAATATTTTTGAGAGAAAAAATGACATAATGAAATGGAAGAGTTCTGAAAAAATGATATTTAGAGAAAATTTGGGTGAAAATTGGAGTTGGATTTATGAATGGATCAAATATAACTAAAACTTGATTAAGATTTACGGAAAAATGAATTATATATAGAAAAGAAATGAAGATAACCGCTTCATGGGTTTCGAACTCATAACTTCAGGGCCAGACGCGCGCTCAATTTGACGAAAAGGAGAGAATTTTCGGAAAGTTGTTATATATTTACAAGATTGCCACTGAAAATATGTGAGAAAAAAATGATTTGCAGGTTATGAGATTACAGGACATCAAAGGCGTGTGCGTGAGGAGAAGACGACACGTGGCATGCGTAGATTGGTAGAGAGTGGAGAACGTACGCGCGTGAAGTGTTTTGAAAATGGGGAATAAAGGAATACGCTCGGCTGGGATTCGAACTCGCGACCTTGAGGTGTTTTATTTGCGTGGAAGTATTGAATCTTTTTGGTTATTTACCAACTGGTTTTTGATCTTCGATTTACTCGTTTTTCTTTGTTCGGACTTCGCTTTAAGTGTTTTTCATTGC

mRNA sequence

ATGATTCACAGAGTAACACCTATAACTCTGGTTGGAGGGACCATCCAAATCTCAAGTGGGGACCTTAAGAATCAAAACCTACCAACACTTCTTCTTCCTCCTAATCATCACAAGGTTATGAGATTACAGGACATCAAAGGCGTGTGCGTGAGGAGAAGACGACACGTGGCATGCGTAGATTGGTAGAGAGTGGAGAACGTACGCGCGTGAAGTGTTTTGAAAATGGGGAATAAAGGAATACGCTCGGCTGGGATTCGAACTCGCGACCTTGAGGTGTTTTATTTGCGTGGAAGTATTGAATCTTTTTGGTTATTTACCAACTGGTTTTTGATCTTCGATTTACTCGTTTTTCTTTGTTCGGACTTCGCTTTAAGTGTTTTTCATTGC

Coding sequence (CDS)

ATGATTCACAGAGTAACACCTATAACTCTGGTTGGAGGGACCATCCAAATCTCAAGTGGGGACCTTAAGAATCAAAACCTACCAACACTTCTTCTTCCTCCTAATCATCACAAGGTTATGAGATTACAGGACATCAAAGGCGTGTGCGTGAGGAGAAGACGACACGTGGCATGCGTAGATTGGTAG

Protein sequence

MIHRVTPITLVGGTIQISSGDLKNQNLPTLLLPPNHHKVMRLQDIKGVCVRRRRHVACVDW
Homology
[Close]
BLAST of Cmc07g0192451 vs. NCBI nr
Match: KAA0062010.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-08
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 1  MIHRVTPITL--VGGTIQISSGDLKNQNLPTLLLPPNHHKVMRLQD 45
          MIHR+TP TL  VGGTIQIS GDLK QNLPTLLLP +HHK+ +L +
Sbjct: 1  MIHRITPTTLVGVGGTIQISGGDLKIQNLPTLLLPHHHHKIPKLSE 46

[Close]
BLAST of Cmc07g0192451 vs. NCBI nr
Match: KAA0066234.1 (Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 0 

Query: 1  MIHRVTPITLVGGTIQISSGDLKNQNLPTLLLPPNHHKVMRLQ 44
          MIHRVTP TL GG IQI  GDLKNQNLPTLLLP +HHK   +Q
Sbjct: 1  MIHRVTPKTLDGGMIQILGGDLKNQNLPTLLLPHHHHKKEAIQ 43

[Close]
BLAST of Cmc07g0192451 vs. ExPASy TrEMBL
Match: A0A5A7V3Y7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003170 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-08
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 1  MIHRVTPITL--VGGTIQISSGDLKNQNLPTLLLPPNHHKVMRLQD 45
          MIHR+TP TL  VGGTIQIS GDLK QNLPTLLLP +HHK+ +L +
Sbjct: 1  MIHRITPTTLVGVGGTIQISGGDLKIQNLPTLLLPHHHHKIPKLSE 46

[Close]
BLAST of Cmc07g0192451 vs. ExPASy TrEMBL
Match: A0A5A7VG00 (Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002600 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.0e-08
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 0 

Query: 1  MIHRVTPITLVGGTIQISSGDLKNQNLPTLLLPPNHHKVMRLQ 44
          MIHRVTP TL GG IQI  GDLKNQNLPTLLLP +HHK   +Q
Sbjct: 1  MIHRVTPKTLDGGMIQILGGDLKNQNLPTLLLPHHHHKKEAIQ 43

The following BLAST results are available for this feature:
BLAST of Cmc07g0192451 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062010.13.7e-0871.74reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0066234.11.9e-0774.42Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var.... [more]
BLAST of Cmc07g0192451 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc07g0192451 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V3Y71.8e-0871.74Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89... [more]
A0A5A7VG009.0e-0874.42Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo va... [more]
BLAST of Cmc07g0192451 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc07g0192451.1Cmc07g0192451.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003964 RNA-directed DNA polymerase activity