Cmc07g0192251 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0192251
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Location	CMiso1.1chr07: 12759803 .. 12760300 (+)
RNA-Seq Expression	Cmc07g0192251
Synteny	Cmc07g0192251

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCAAGACCTGAAGCGGGTTTATTGGTGGCGTAATATGAAGAGGGAGGTGGCAGAATTTGTTAGTAAGTGCTTGGTATGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGAGGGTTTATTACAACCCTTGAGCGTACCGGAATGGAAGTGGGAAAACGTGTCGATGGATTTCATAACAGGACTGCCAAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTAGTTGACAGGCTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACCGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTAAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTGCTAAGGGCACGAGGTTAGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTACAAGATATGTTGTGA

mRNA sequence

ATGTATCAAGACCTGAAGCGGGTTTATTGGTGGCGTAATATGAAGAGGGAGGTGGCAGAATTTGTTAGTAAGTGCTTGGTATGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGAGGGTTTATTACAACCCTTGAGCGTACCGGAATGGAAGTGGGAAAACGTGTCGATGGATTTCATAACAGGACTGCCAAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTAGTTGACAGGCTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACCGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTAAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTGCTAAGGGCACGAGGTTAGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTACAAGATATGTTGTGA

Coding sequence (CDS)

ATGTATCAAGACCTGAAGCGGGTTTATTGGTGGCGTAATATGAAGAGGGAGGTGGCAGAATTTGTTAGTAAGTGCTTGGTATGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGAGGGTTTATTACAACCCTTGAGCGTACCGGAATGGAAGTGGGAAAACGTGTCGATGGATTTCATAACAGGACTGCCAAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTAGTTGACAGGCTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACCGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTAAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTGCTAAGGGCACGAGGTTAGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTACAAGATATGTTGTGA

Protein sequence

MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAKGTRLDFSTAFHPQTDGQTERLNQVLQDML

Homology

[Close]

BLAST of Cmc07g0192251 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 339.0 bits (868), Expect = 2.4e-89
Identity = 161/165 (97.58%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1    MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFI 60
            MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKP GLLQPLS+PEWKWENVSMDFI
Sbjct: 1353 MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFI 1412

Query: 61   TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 120
            TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR
Sbjct: 1413 TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 1472

Query: 121  DARFTSKFWKGLQTAKGTRLDFSTAFHPQTDGQTERLNQVLQDML 166
            DARFTSKFWKGLQTA GTRLDFSTAFHPQTDGQTERLNQVL+DML
Sbjct: 1473 DARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDML 1517

[Close]

BLAST of Cmc07g0192251 vs. NCBI nr
Match: KAA0053631.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 339.0 bits (868), Expect = 2.4e-89
Identity = 161/165 (97.58%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFI 60
           MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKP GLLQPLS+PEWKWENVSMDFI
Sbjct: 8   MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFI 67

Query: 61  TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 120
           TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR
Sbjct: 68  TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 127

Query: 121 DARFTSKFWKGLQTAKGTRLDFSTAFHPQTDGQTERLNQVLQDML 166
           DARFTSKFWKGLQTA GTRLDFSTAFHPQTDGQTERLNQVL+DML
Sbjct: 128 DARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDML 172

[Close]

BLAST of Cmc07g0192251 vs. NCBI nr
Match: KAA0064005.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 339.0 bits (868), Expect = 2.4e-89
Identity = 161/165 (97.58%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFI 60
           MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKP GLLQPLS+PEWKWENVSMDFI
Sbjct: 216 MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFI 275

Query: 61  TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 120
           TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR
Sbjct: 276 TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 335

Query: 121 DARFTSKFWKGLQTAKGTRLDFSTAFHPQTDGQTERLNQVLQDML 166
           DARFTSKFWKGLQTA GTRLDFSTAFHPQTDGQTERLNQVL+DML
Sbjct: 336 DARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDML 380

[Close]

BLAST of Cmc07g0192251 vs. NCBI nr
Match: KAA0035938.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 339.0 bits (868), Expect = 2.4e-89
Identity = 161/165 (97.58%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFI 60
           MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKP GLLQPLS+PEWKWENVSMDFI
Sbjct: 406 MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFI 465

Query: 61  TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 120
           TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR
Sbjct: 466 TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 525

Query: 121 DARFTSKFWKGLQTAKGTRLDFSTAFHPQTDGQTERLNQVLQDML 166
           DARFTSKFWKGLQTA GTRLDFSTAFHPQTDGQTERLNQVL+DML
Sbjct: 526 DARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDML 570

[Close]

BLAST of Cmc07g0192251 vs. NCBI nr
Match: KAA0025425.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 339.0 bits (868), Expect = 2.4e-89
Identity = 161/165 (97.58%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFI 60
           MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKP GLLQPLS+PEWKWENVSMDFI
Sbjct: 85  MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFI 144

Query: 61  TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 120
           TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR
Sbjct: 145 TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 204

Query: 121 DARFTSKFWKGLQTAKGTRLDFSTAFHPQTDGQTERLNQVLQDML 166
           DARFTSKFWKGLQTA GTRLDFSTAFHPQTDGQTERLNQVL+DML
Sbjct: 205 DARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDML 249

[Close]

BLAST of Cmc07g0192251 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 136.0 bits (341), Expect = 4.0e-31
Identity = 64/158 (40.51%), Postives = 95/158 (60.13%), Query Frame = 0


Query: 8    VYWWRNMKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFITGLPRTL 67
            +Y+W  ++  + +++  C+ CQ +K+ R +  GLLQPL + E +W ++SMDF+TGLP T 
Sbjct: 1125 IYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTS 1184

Query: 68   RGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSK 127
                +I VVVDR +K AHF+  + T  A++   L    I   HG P +I SDRD R T+ 
Sbjct: 1185 NNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTAD 1244

Query: 128  FWKGLQTAKGTRLDFSTAFHPQTDGQTERLNQVLQDML 166
             ++ L    G +   S+A HPQTDGQ+ER  Q L  +L
Sbjct: 1245 KYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLL 1282

[Close]

BLAST of Cmc07g0192251 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 136.0 bits (341), Expect = 4.0e-31
Identity = 64/158 (40.51%), Postives = 95/158 (60.13%), Query Frame = 0


Query: 8    VYWWRNMKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFITGLPRTL 67
            +Y+W  ++  + +++  C+ CQ +K+ R +  GLLQPL + E +W ++SMDF+TGLP T 
Sbjct: 1151 IYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTS 1210

Query: 68   RGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSK 127
                +I VVVDR +K AHF+  + T  A++   L    I   HG P +I SDRD R T+ 
Sbjct: 1211 NNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTAD 1270

Query: 128  FWKGLQTAKGTRLDFSTAFHPQTDGQTERLNQVLQDML 166
             ++ L    G +   S+A HPQTDGQ+ER  Q L  +L
Sbjct: 1271 KYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLL 1308

[Close]

BLAST of Cmc07g0192251 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-28
Identity = 62/159 (38.99%), Postives = 94/159 (59.12%), Query Frame = 0


Query: 7    RVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFITGLPRT 66
            R + W+ +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +
Sbjct: 939  RRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES 998

Query: 67   LRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTS 126
              G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS
Sbjct: 999  -SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTS 1058

Query: 127  KFWKGLQTAKGTRLDFSTAFHPQTDGQTERLNQVLQDML 166
            + WK         + FS  + PQTDGQTER NQ ++ +L
Sbjct: 1059 QTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLL 1096

[Close]

BLAST of Cmc07g0192251 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-28
Identity = 62/159 (38.99%), Postives = 94/159 (59.12%), Query Frame = 0


Query: 7    RVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFITGLPRT 66
            R + W+ +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +
Sbjct: 939  RRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES 998

Query: 67   LRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTS 126
              G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS
Sbjct: 999  -SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTS 1058

Query: 127  KFWKGLQTAKGTRLDFSTAFHPQTDGQTERLNQVLQDML 166
            + WK         + FS  + PQTDGQTER NQ ++ +L
Sbjct: 1059 QTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLL 1096

[Close]

BLAST of Cmc07g0192251 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-28
Identity = 62/159 (38.99%), Postives = 94/159 (59.12%), Query Frame = 0


Query: 7    RVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFITGLPRT 66
            R + W+ +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +
Sbjct: 939  RRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES 998

Query: 67   LRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTS 126
              G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS
Sbjct: 999  -SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTS 1058

Query: 127  KFWKGLQTAKGTRLDFSTAFHPQTDGQTERLNQVLQDML 166
            + WK         + FS  + PQTDGQTER NQ ++ +L
Sbjct: 1059 QTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLL 1096

[Close]

BLAST of Cmc07g0192251 vs. ExPASy TrEMBL
Match: A0A5A7VDP3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.1e-89
Identity = 161/165 (97.58%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFI 60
           MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKP GLLQPLS+PEWKWENVSMDFI
Sbjct: 216 MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFI 275

Query: 61  TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 120
           TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR
Sbjct: 276 TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 335

Query: 121 DARFTSKFWKGLQTAKGTRLDFSTAFHPQTDGQTERLNQVLQDML 166
           DARFTSKFWKGLQTA GTRLDFSTAFHPQTDGQTERLNQVL+DML
Sbjct: 336 DARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDML 380

[Close]

BLAST of Cmc07g0192251 vs. ExPASy TrEMBL
Match: A0A5A7SZD6 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001250 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.1e-89
Identity = 161/165 (97.58%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFI 60
           MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKP GLLQPLS+PEWKWENVSMDFI
Sbjct: 406 MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFI 465

Query: 61  TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 120
           TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR
Sbjct: 466 TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 525

Query: 121 DARFTSKFWKGLQTAKGTRLDFSTAFHPQTDGQTERLNQVLQDML 166
           DARFTSKFWKGLQTA GTRLDFSTAFHPQTDGQTERLNQVL+DML
Sbjct: 526 DARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDML 570

[Close]

BLAST of Cmc07g0192251 vs. ExPASy TrEMBL
Match: A0A5A7UDJ5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00830 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.1e-89
Identity = 161/165 (97.58%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFI 60
           MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKP GLLQPLS+PEWKWENVSMDFI
Sbjct: 356 MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFI 415

Query: 61  TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 120
           TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR
Sbjct: 416 TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 475

Query: 121 DARFTSKFWKGLQTAKGTRLDFSTAFHPQTDGQTERLNQVLQDML 166
           DARFTSKFWKGLQTA GTRLDFSTAFHPQTDGQTERLNQVL+DML
Sbjct: 476 DARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDML 520

[Close]

BLAST of Cmc07g0192251 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.1e-89
Identity = 161/165 (97.58%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1    MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFI 60
            MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKP GLLQPLS+PEWKWENVSMDFI
Sbjct: 1353 MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFI 1412

Query: 61   TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 120
            TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR
Sbjct: 1413 TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 1472

Query: 121  DARFTSKFWKGLQTAKGTRLDFSTAFHPQTDGQTERLNQVLQDML 166
            DARFTSKFWKGLQTA GTRLDFSTAFHPQTDGQTERLNQVL+DML
Sbjct: 1473 DARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDML 1517

[Close]

BLAST of Cmc07g0192251 vs. ExPASy TrEMBL
Match: A0A5A7U7V9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00950 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.1e-89
Identity = 161/165 (97.58%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1    MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFI 60
            MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKP GLLQPLS+PEWKWENVSMDFI
Sbjct: 1046 MYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFI 1105

Query: 61   TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 120
            TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR
Sbjct: 1106 TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDR 1165

Query: 121  DARFTSKFWKGLQTAKGTRLDFSTAFHPQTDGQTERLNQVLQDML 166
            DARFTSKFWKGLQTA GTRLDFSTAFHPQTDGQTERLNQVL+DML
Sbjct: 1166 DARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDML 1210

The following BLAST results are available for this feature:

BLAST of Cmc07g0192251 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01613.1	2.4e-89	97.58	pol protein [Cucumis melo var. makuwa]	[more]
KAA0053631.1	2.4e-89	97.58	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0064005.1	2.4e-89	97.58	pol protein [Cucumis melo var. makuwa]	[more]
KAA0035938.1	2.4e-89	97.58	pol protein [Cucumis melo var. makuwa]	[more]
KAA0025425.1	2.4e-89	97.58	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0192251 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	4.0e-31	40.51	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	4.0e-31	40.51	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	1.1e-28	38.99	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.1e-28	38.99	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.1e-28	38.99	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc07g0192251 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VDP3	1.1e-89	97.58	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 P...	[more]
A0A5A7SZD6	1.1e-89	97.58	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001250 PE...	[more]
A0A5A7UDJ5	1.1e-89	97.58	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00830 PE...	[more]
A0A5D3BPI1	1.1e-89	97.58	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7U7V9	1.1e-89	97.58	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]

BLAST of Cmc07g0192251 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 1..33 e-value: 1.2E-9 score: 38.1
None	No IPR available	GENE3D	1.10.340.70		coord: 1..32 e-value: 5.7E-8 score: 34.9
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 3..165
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 41..165 e-value: 5.9E-31 score: 109.3
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 44..165 score: 16.447775
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 45..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0192251.1	Cmc07g0192251.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding