Cmc07g0190911 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0190911
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr07: 10314664 .. 10315485 (-)
RNA-Seq Expression	Cmc07g0190911
Synteny	Cmc07g0190911

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGGAAGTAAATCAATGTTGGTGGAACTTGATGAATCTGTTGGTGGCGATATTGTATTTGGTGATTCCACAAAAATTTCAGTTAAAGAAAAAGGTAAAATTTTGATCAATTTGAAGAATGGGAAGCATGAGTTTATCTCTAATGTTTATTATGTGCCTAATATGAAGAACAACATTTTGAGTTTGGGGAAACTCTTAGAGAAAGGCTATAATATTTTGATGAAGGATTATAGTTTTTTGATAAGAGATAATCATGACAAAATTATTGCTAAAGTGCAAATGACGAAAAATAGAATATTTTTATTAAACATTCAAACTGATGTTGCTAAATGTTTAAAGTCATGTTTGAAAGATCCCAATTGGATTTGGCACTTGAGATTTGGGCATTTGAACTTTGATGGCTTAAGATTATTAGCCAGGAAGAACATGGTGAAAGGGTTGCCATATGTCAAACATCCAGATCAACTTTGTGAAGGTTGTCTTCATGGCAAACAATCAAGGAAGAGTTTTCCACAAGAATCATCTTCGAGAGCAAGGAGACAACTGGAGTTAGTTCACACGGATCTTTTTGGACCGATCAAACCAAGTTCTTTTGGTAAGAATAATTATTTCTTATTATTTATTGATGATTTCAGCCGAAAAACTTGGGTTTACTTTGTTAAGGAGAAATCAAAAGTATTTGACATGTTCAAGAGATTTAAAGCTCTTGTTGAAAAAGAAAGTGGTTATTACATTAAAGCTTTGAGATCAGACAGGGGAGGTGAATTTCAAATGAATTCAAAACTTTTTACGCAGAAAATGGAATCCGTTGACCTATGA

mRNA sequence

ATGTGTGGAAGTAAATCAATGTTGGTGGAACTTGATGAATCTGTTGGTGGCGATATTGTATTTGGTGATTCCACAAAAATTTCAGTTAAAGAAAAAGGTAAAATTTTGATCAATTTGAAGAATGGGAAGCATGAGTTTATCTCTAATGTTTATTATGTGCCTAATATGAAGAACAACATTTTGAGTTTGGGGAAACTCTTAGAGAAAGGCTATAATATTTTGATGAAGGATTATAGTTTTTTGATAAGAGATAATCATGACAAAATTATTGCTAAAGTGCAAATGACGAAAAATAGAATATTTTTATTAAACATTCAAACTGATGTTGCTAAATGTTTAAAGTCATGTTTGAAAGATCCCAATTGGATTTGGCACTTGAGATTTGGGCATTTGAACTTTGATGGCTTAAGATTATTAGCCAGGAAGAACATGGTGAAAGGGTTGCCATATGTCAAACATCCAGATCAACTTTGTGAAGGTTGTCTTCATGGCAAACAATCAAGGAAGAGTTTTCCACAAGAATCATCTTCGAGAGCAAGGAGACAACTGGAGTTAGTTCACACGGATCTTTTTGGACCGATCAAACCAAGTTCTTTTGGTAAGAATAATTATTTCTTATTATTTATTGATGATTTCAGCCGAAAAACTTGGGTTTACTTTGTTAAGGAGAAATCAAAAGTATTTGACATGTTCAAGAGATTTAAAGCTCTTGTTGAAAAAGAAAGTGGTTATTACATTAAAGCTTTGAGATCAGACAGGGGAGGTGAATTTCAAATGAATTCAAAACTTTTTACGCAGAAAATGGAATCCGTTGACCTATGA

Coding sequence (CDS)

ATGTGTGGAAGTAAATCAATGTTGGTGGAACTTGATGAATCTGTTGGTGGCGATATTGTATTTGGTGATTCCACAAAAATTTCAGTTAAAGAAAAAGGTAAAATTTTGATCAATTTGAAGAATGGGAAGCATGAGTTTATCTCTAATGTTTATTATGTGCCTAATATGAAGAACAACATTTTGAGTTTGGGGAAACTCTTAGAGAAAGGCTATAATATTTTGATGAAGGATTATAGTTTTTTGATAAGAGATAATCATGACAAAATTATTGCTAAAGTGCAAATGACGAAAAATAGAATATTTTTATTAAACATTCAAACTGATGTTGCTAAATGTTTAAAGTCATGTTTGAAAGATCCCAATTGGATTTGGCACTTGAGATTTGGGCATTTGAACTTTGATGGCTTAAGATTATTAGCCAGGAAGAACATGGTGAAAGGGTTGCCATATGTCAAACATCCAGATCAACTTTGTGAAGGTTGTCTTCATGGCAAACAATCAAGGAAGAGTTTTCCACAAGAATCATCTTCGAGAGCAAGGAGACAACTGGAGTTAGTTCACACGGATCTTTTTGGACCGATCAAACCAAGTTCTTTTGGTAAGAATAATTATTTCTTATTATTTATTGATGATTTCAGCCGAAAAACTTGGGTTTACTTTGTTAAGGAGAAATCAAAAGTATTTGACATGTTCAAGAGATTTAAAGCTCTTGTTGAAAAAGAAAGTGGTTATTACATTAAAGCTTTGAGATCAGACAGGGGAGGTGAATTTCAAATGAATTCAAAACTTTTTACGCAGAAAATGGAATCCGTTGACCTATGA

Protein sequence

MCGSKSMLVELDESVGGDIVFGDSTKISVKEKGKILINLKNGKHEFISNVYYVPNMKNNILSLGKLLEKGYNILMKDYSFLIRDNHDKIIAKVQMTKNRIFLLNIQTDVAKCLKSCLKDPNWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHGKQSRKSFPQESSSRARRQLELVHTDLFGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSKVFDMFKRFKALVEKESGYYIKALRSDRGGEFQMNSKLFTQKMESVDL

Homology

[Close]

BLAST of Cmc07g0190911 vs. NCBI nr
Match: TYK29027.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 497.7 bits (1280), Expect = 6.5e-137
Identity = 244/260 (93.85%), Postives = 249/260 (95.77%), Query Frame = 0


Query: 1   MCGSKSMLVELDESVGGDIVFGDSTKISVKEKGKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCGSKSM VELDESVGGDIVFGD+TKI VK KGKILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 232 MCGSKSMFVELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 291

Query: 61  LSLGKLLEKGYNILMKDYSFLIRDNHDKIIAKVQMTKNRIFLLNIQTDVAKCLKSCLKDP 120
           LSLG+LLEKGYNILMKDYS LIRDNHDKIIAKVQMTKNR+FLLNIQTDVA+CLKSCLKDP
Sbjct: 292 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 351

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 352 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 411

Query: 181 RQLELVHTDLFGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSKVFDMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKS+VF MFKRFKALVEK
Sbjct: 412 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 471

Query: 241 ESGYYIKALRSDRGGEFQMN 261
           ESGYYIKALRSDRGGEF  N
Sbjct: 472 ESGYYIKALRSDRGGEFTSN 491

[Close]

BLAST of Cmc07g0190911 vs. NCBI nr
Match: TYK18362.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 497.3 bits (1279), Expect = 8.6e-137
Identity = 243/260 (93.46%), Postives = 249/260 (95.77%), Query Frame = 0


Query: 1   MCGSKSMLVELDESVGGDIVFGDSTKISVKEKGKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCGSKSM +ELDESVGGDIVFGD+TKI VK KGKILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGKLLEKGYNILMKDYSFLIRDNHDKIIAKVQMTKNRIFLLNIQTDVAKCLKSCLKDP 120
           LSLG+LLEKGYNILMKDYS LIRDNHDKIIAKVQMTKNR+FLLNIQTDVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RQLELVHTDLFGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSKVFDMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKS+VF MFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYIKALRSDRGGEFQMN 261
           ESGYYIKALRSDRGGEF  N
Sbjct: 572 ESGYYIKALRSDRGGEFTSN 591

[Close]

BLAST of Cmc07g0190911 vs. NCBI nr
Match: KAA0047979.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 497.3 bits (1279), Expect = 8.6e-137
Identity = 243/260 (93.46%), Postives = 249/260 (95.77%), Query Frame = 0


Query: 1   MCGSKSMLVELDESVGGDIVFGDSTKISVKEKGKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCGSKSM +ELDESVGGDIVFGD+TKI VK KGKILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGKLLEKGYNILMKDYSFLIRDNHDKIIAKVQMTKNRIFLLNIQTDVAKCLKSCLKDP 120
           LSLG+LLEKGYNILMKDYS LIRDNHDKIIAKVQMTKNR+FLLNIQTDVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RQLELVHTDLFGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSKVFDMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKS+VF MFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYIKALRSDRGGEFQMN 261
           ESGYYIKALRSDRGGEF  N
Sbjct: 572 ESGYYIKALRSDRGGEFTSN 591

[Close]

BLAST of Cmc07g0190911 vs. NCBI nr
Match: TYJ96309.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 497.3 bits (1279), Expect = 8.6e-137
Identity = 243/260 (93.46%), Postives = 249/260 (95.77%), Query Frame = 0


Query: 1   MCGSKSMLVELDESVGGDIVFGDSTKISVKEKGKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCGSKSM +ELDESVGGDIVFGD+TKI VK KGKILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGKLLEKGYNILMKDYSFLIRDNHDKIIAKVQMTKNRIFLLNIQTDVAKCLKSCLKDP 120
           LSLG+LLEKGYNILMKDYS LIRDNHDKIIAKVQMTKNR+FLLNIQTDVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RQLELVHTDLFGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSKVFDMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKS+VF MFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYIKALRSDRGGEFQMN 261
           ESGYYIKALRSDRGGEF  N
Sbjct: 572 ESGYYIKALRSDRGGEFTSN 591

[Close]

BLAST of Cmc07g0190911 vs. NCBI nr
Match: TYK06895.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 497.3 bits (1279), Expect = 8.6e-137
Identity = 243/260 (93.46%), Postives = 249/260 (95.77%), Query Frame = 0


Query: 1   MCGSKSMLVELDESVGGDIVFGDSTKISVKEKGKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCGSKSM +ELDESVGGDIVFGD+TKI VK KGKILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGKLLEKGYNILMKDYSFLIRDNHDKIIAKVQMTKNRIFLLNIQTDVAKCLKSCLKDP 120
           LSLG+LLEKGYNILMKDYS LIRDNHDKIIAKVQMTKNR+FLLNIQTDVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RQLELVHTDLFGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSKVFDMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKS+VF MFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYIKALRSDRGGEFQMN 261
           ESGYYIKALRSDRGGEF  N
Sbjct: 572 ESGYYIKALRSDRGGEFTSN 591

[Close]

BLAST of Cmc07g0190911 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.6e-31
Identity = 84/242 (34.71%), Postives = 136/242 (56.20%), Query Frame = 0


Query: 17  GDIVFGDSTKISVKEKGKILINLKNGKHEFISNVYYVPNMKNNILSLGKLLEKGYNILMK 76
           G +  G+++   +   G I I    G    + +V +VP+++ N++S   L   GY     
Sbjct: 320 GTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFA 379

Query: 77  DYSFLIRDNHDKIIAKVQMTKNRIFLLNIQTDVAKCLKSCLKDPNWIWHLRFGHLNFDGL 136
           +  + +      +IAK  + +  ++  N +    +   +  +    +WH R GH++  GL
Sbjct: 380 NQKWRLTKG-SLVIAK-GVARGTLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGL 439

Query: 137 RLLARKNMVKGLPYVKHPD-QLCEGCLHGKQSRKSFPQESSSRARRQLELVHTDLFGPIK 196
           ++LA+K+++    Y K    + C+ CL GKQ R SF Q SS R    L+LV++D+ GP++
Sbjct: 440 QILAKKSLIS---YAKGTTVKPCDYCLFGKQHRVSF-QTSSERKLNILDLVYSDVCGPME 499

Query: 197 PSSFGKNNYFLLFIDDFSRKTWVYFVKEKSKVFDMFKRFKALVEKESGYYIKALRSDRGG 256
             S G N YF+ FIDD SRK WVY +K K +VF +F++F ALVE+E+G  +K LRSD GG
Sbjct: 500 IESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGG 555

Query: 257 EF 258
           E+
Sbjct: 560 EY 555

[Close]

BLAST of Cmc07g0190911 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 110.2 bits (274), Expect = 3.9e-23
Identity = 76/266 (28.57%), Postives = 131/266 (49.25%), Query Frame = 0


Query: 12  DESVGGDIVFGDST------KISVKEKGKI-------LINLKNGKHEFISNVYYVPNMKN 71
           D  +  + ++ DS       KI+V ++G+        ++ L+N     + +V +      
Sbjct: 297 DHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDHEITLEDVLFCKEAAG 356

Query: 72  NILSLGKLLEKGYNILMKDYSFLIRDNHDKIIAKVQMTKNRIFLLNIQTDVAKCLKSCLK 131
           N++S+ +L E G +I   D S +    +  ++ K     N + ++N Q   A  + +  K
Sbjct: 357 NLMSVKRLQEAGMSIEF-DKSGVTISKNGLMVVKNSGMLNNVPVINFQ---AYSINAKHK 416

Query: 132 DPNWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPD---QLCEGCLHGKQSRKSFPQ-E 191
           +   +WH RFGH++   L  + RKNM      + + +   ++CE CL+GKQ+R  F Q +
Sbjct: 417 NNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLK 476

Query: 192 SSSRARRQLELVHTDLFGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSKVFDMFKRF 251
             +  +R L +VH+D+ GPI P +    NYF++F+D F+     Y +K KS VF MF+ F
Sbjct: 477 DKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDF 536

Query: 252 KALVEKESGYYIKALRSDRGGEFQMN 261
            A  E      +  L  D G E+  N
Sbjct: 537 VAKSEAHFNLKVVYLYIDNGREYLSN 558

[Close]

BLAST of Cmc07g0190911 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-17
Identity = 71/255 (27.84%), Postives = 122/255 (47.84%), Query Frame = 0


Query: 16  GGDIVFGDSTKISVKEKGKILINLKNGKHEFISNVYYVPNMKNNILSLGKLLE-KGYNIL 75
           G D++  D + I +   G   ++ K+ +   + N+ YVPN+  N++S+ +L    G ++ 
Sbjct: 357 GDDVMVADGSTIPISHTGSTSLSTKS-RPLNLHNILYVPNIHKNLISVYRLCNANGVSVE 416

Query: 76  MKDYSFLIRDNHDKIIAKVQMTKNRIFLLNIQTD--VAKCLKSCLKDPNWIWHLRFGHLN 135
               SF ++D +  +      TK+ ++   I +   V+       K  +  WH R GH  
Sbjct: 417 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPA 476

Query: 136 FDGLRLLARKNMVKGLPYVKHPDQLCEGCLHGKQSRKSFPQESSSRARRQLELVHTDLF- 195
              L  +   N    +    H    C  CL  K ++  F Q S+  + R LE +++D++ 
Sbjct: 477 PSILNSVI-SNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQ-STINSTRPLEYIYSDVWS 536

Query: 196 GPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSKVFDMFKRFKALVEKESGYYIKALRS 255
            PI   S     Y+++F+D F+R TW+Y +K+KS+V + F  FK L+E      I    S
Sbjct: 537 SPI--LSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYS 596

Query: 256 DRGGEFQMNSKLFTQ 267
           D GGEF    + F+Q
Sbjct: 597 DNGGEFVALWEYFSQ 606

[Close]

BLAST of Cmc07g0190911 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-17
Identity = 70/248 (28.23%), Postives = 118/248 (47.58%), Query Frame = 0


Query: 16  GGDIVFGDSTKISVKEKGKILINLKNGKHEFISNVYYVPNMKNNILSLGKLLEKG-YNIL 75
           G D++  D + I +   G   +   +   + ++ V YVPN+  N++S+ +L      ++ 
Sbjct: 336 GDDVMIADGSTIPITHTGSASLPTSSRSLD-LNKVLYVPNIHKNLISVYRLCNTNRVSVE 395

Query: 76  MKDYSFLIRDNHDKIIAKVQMTKNRIFLLNIQTD--VAKCLKSCLKDPNWIWHLRFGHLN 135
               SF ++D +  +      TK+ ++   I +   V+     C K  +  WH R GH  
Sbjct: 396 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHSSWHSRLGH-- 455

Query: 136 FDGLRLLARKNMVKGLPYVKHPDQL--CEGCLHGKQSRKSFPQESSSRARRQLELVHTDL 195
              L +L        LP +    +L  C  C   K  +  F   S+  + + LE +++D+
Sbjct: 456 -PSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPF-SNSTITSSKPLEYIYSDV 515

Query: 196 F-GPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSKVFDMFKRFKALVEKESGYYIKAL 255
           +  PI   S     Y+++F+D F+R TW+Y +K+KS+V D F  FK+LVE      I  L
Sbjct: 516 WSSPI--LSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTL 575

Query: 256 RSDRGGEF 258
            SD GGEF
Sbjct: 576 YSDNGGEF 576

[Close]

BLAST of Cmc07g0190911 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.4e-11
Identity = 67/275 (24.36%), Postives = 119/275 (43.27%), Query Frame = 0


Query: 18  DIVFGDSTKISVKEKGKILINLKNGKHEFISNVYYVPNMKNNILSLGKLLEKGY------ 77
           +IV      I +   G +  N +NG    I    + PN+  ++LSL +L  +        
Sbjct: 481 NIVDAQKQDIPINAIGNLHFNFQNGTKTSI-KALHTPNIAYDLLSLSELANQNITACFTR 540

Query: 78  NILMKD----YSFLIRDNHDKIIAKVQMTKNRIFLLNIQTDVAKCLKSCLKDPNWIWHLR 137
           N L +      + +++      ++K  +  + I  L I  +V K  KS  K P  + H  
Sbjct: 541 NTLERSDGTVLAPIVKHGDFYWLSKKYLIPSHISKLTI-NNVNKS-KSVNKYPYPLIHRM 600

Query: 138 FGHLNFDGLRLLARKNMVKGLPYVKHPD--------QLCEGCLHGKQSRKSFPQESSSRA 197
            GH NF  ++   +KN V    Y+K  D          C  CL GK ++    + S  + 
Sbjct: 601 LGHANFRSIQKSLKKNAV---TYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKY 660

Query: 198 RRQLE---LVHTDLFGPIKPSSFGKNNYFLLFIDDFSRKTWVYFV--KEKSKVFDMFKRF 257
           +   E    +HTD+FGP+        +YF+ F D+ +R  WVY +  + +  + ++F   
Sbjct: 661 QESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSI 720

Query: 258 KALVEKESGYYIKALRSDRGGEFQMNS--KLFTQK 268
            A ++ +    +  ++ DRG E+   +  K FT +
Sbjct: 721 LAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNR 749

[Close]

BLAST of Cmc07g0190911 vs. ExPASy TrEMBL
Match: A0A5D3DYS0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001400 PE=4 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 3.2e-137
Identity = 244/260 (93.85%), Postives = 249/260 (95.77%), Query Frame = 0


Query: 1   MCGSKSMLVELDESVGGDIVFGDSTKISVKEKGKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCGSKSM VELDESVGGDIVFGD+TKI VK KGKILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 232 MCGSKSMFVELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 291

Query: 61  LSLGKLLEKGYNILMKDYSFLIRDNHDKIIAKVQMTKNRIFLLNIQTDVAKCLKSCLKDP 120
           LSLG+LLEKGYNILMKDYS LIRDNHDKIIAKVQMTKNR+FLLNIQTDVA+CLKSCLKDP
Sbjct: 292 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 351

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 352 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 411

Query: 181 RQLELVHTDLFGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSKVFDMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKS+VF MFKRFKALVEK
Sbjct: 412 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 471

Query: 241 ESGYYIKALRSDRGGEFQMN 261
           ESGYYIKALRSDRGGEF  N
Sbjct: 472 ESGYYIKALRSDRGGEFTSN 491

[Close]

BLAST of Cmc07g0190911 vs. ExPASy TrEMBL
Match: A0A5A7V3X9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003030 PE=4 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 4.1e-137
Identity = 243/260 (93.46%), Postives = 249/260 (95.77%), Query Frame = 0


Query: 1   MCGSKSMLVELDESVGGDIVFGDSTKISVKEKGKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCGSKSM +ELDESVGGDIVFGD+TKI VK KGKILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGKLLEKGYNILMKDYSFLIRDNHDKIIAKVQMTKNRIFLLNIQTDVAKCLKSCLKDP 120
           LSLG+LLEKGYNILMKDYS LIRDNHDKIIAKVQMTKNR+FLLNIQTDVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RQLELVHTDLFGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSKVFDMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKS+VF MFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYIKALRSDRGGEFQMN 261
           ESGYYIKALRSDRGGEF  N
Sbjct: 572 ESGYYIKALRSDRGGEFTSN 591

[Close]

BLAST of Cmc07g0190911 vs. ExPASy TrEMBL
Match: A0A5A7SJX6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G002010 PE=4 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 4.1e-137
Identity = 243/260 (93.46%), Postives = 249/260 (95.77%), Query Frame = 0


Query: 1   MCGSKSMLVELDESVGGDIVFGDSTKISVKEKGKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCGSKSM +ELDESVGGDIVFGD+TKI VK KGKILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGKLLEKGYNILMKDYSFLIRDNHDKIIAKVQMTKNRIFLLNIQTDVAKCLKSCLKDP 120
           LSLG+LLEKGYNILMKDYS LIRDNHDKIIAKVQMTKNR+FLLNIQTDVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RQLELVHTDLFGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSKVFDMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKS+VF MFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYIKALRSDRGGEFQMN 261
           ESGYYIKALRSDRGGEF  N
Sbjct: 572 ESGYYIKALRSDRGGEFTSN 591

[Close]

BLAST of Cmc07g0190911 vs. ExPASy TrEMBL
Match: A0A5A7V308 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00290 PE=4 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 4.1e-137
Identity = 243/260 (93.46%), Postives = 249/260 (95.77%), Query Frame = 0


Query: 1   MCGSKSMLVELDESVGGDIVFGDSTKISVKEKGKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCGSKSM +ELDESVGGDIVFGD+TKI VK KGKILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGKLLEKGYNILMKDYSFLIRDNHDKIIAKVQMTKNRIFLLNIQTDVAKCLKSCLKDP 120
           LSLG+LLEKGYNILMKDYS LIRDNHDKIIAKVQMTKNR+FLLNIQTDVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RQLELVHTDLFGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSKVFDMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKS+VF MFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYIKALRSDRGGEFQMN 261
           ESGYYIKALRSDRGGEF  N
Sbjct: 572 ESGYYIKALRSDRGGEFTSN 591

[Close]

BLAST of Cmc07g0190911 vs. ExPASy TrEMBL
Match: A0A5D3D497 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00810 PE=4 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 4.1e-137
Identity = 243/260 (93.46%), Postives = 249/260 (95.77%), Query Frame = 0


Query: 1   MCGSKSMLVELDESVGGDIVFGDSTKISVKEKGKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCGSKSM +ELDESVGGDIVFGD+TKI VK KGKILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGKLLEKGYNILMKDYSFLIRDNHDKIIAKVQMTKNRIFLLNIQTDVAKCLKSCLKDP 120
           LSLG+LLEKGYNILMKDYS LIRDNHDKIIAKVQMTKNR+FLLNIQTDVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHGKQSRKSFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLHGKQSRKSFPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RQLELVHTDLFGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSKVFDMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKS+VF MFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYIKALRSDRGGEFQMN 261
           ESGYYIKALRSDRGGEF  N
Sbjct: 572 ESGYYIKALRSDRGGEFTSN 591

[Close]

BLAST of Cmc07g0190911 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 50.8 bits (120), Expect = 2.0e-06
Identity = 28/88 (31.82%), Postives = 42/88 (47.73%), Query Frame = 0


Query: 113 LKSCLKDPNWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHGKQSRKSFP 172
           L    KD   +WH R  H++  G+ LL +K  +          + CE C++GK  R +F 
Sbjct: 61  LAETAKDETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSL--KFCEDCIYGKTHRVNF- 120

Query: 173 QESSSRARRQLELVHTDLFG-PIKPSSF 200
                  +  L+ VH+DL+G P  P SF
Sbjct: 121 STGQHTTKNPLDYVHSDLWGAPSVPLSF 145

[Close]

BLAST of Cmc07g0190911 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 48.9 bits (115), Expect = 7.5e-06
Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 11  LDESVGGDIVFGDSTKISVKEKGKILINLKNGKHEFISNVYYVPNMKNNILSLGKLLEKG 70
           LD +    +   D T + V+ KG + I +K GK + I NV +VP +  N+LS GK++ K 
Sbjct: 300 LDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNVIFVPGLNRNVLSFGKMVSKR 359

Query: 71  YNI 74
           Y+I
Sbjct: 360 YSI 362

The following BLAST results are available for this feature:

BLAST of Cmc07g0190911 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29027.1	6.5e-137	93.85	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK18362.1	8.6e-137	93.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0047979.1	8.6e-137	93.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYJ96309.1	8.6e-137	93.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK06895.1	8.6e-137	93.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc07g0190911 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.6e-31	34.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.9e-23	28.57	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	2.4e-17	27.84	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.4e-17	28.23	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q12491	4.4e-11	24.36	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc07g0190911 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYS0	3.2e-137	93.85	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V3X9	4.1e-137	93.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SJX6	4.1e-137	93.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V308	4.1e-137	93.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3D497	4.1e-137	93.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc07g0190911 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	2.0e-06	31.82	Gag-Pol-related retrotransposon family protein	[more]
AT3G21000.1	7.5e-06	38.10	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 112..166 e-value: 3.8E-13 score: 49.1
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 173..271 e-value: 3.3E-15 score: 57.9
None	No IPR available	PANTHER	PTHR34676:SF9	SUBFAMILY NOT NAMED	coord: 1..169
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..169
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 168..273 score: 12.676777
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 178..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0190911.1	Cmc07g0190911.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding