Cmc07g0190241 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0190241
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3-gypsy retrotransposon protein
Location	CMiso1.1chr07: 9247847 .. 9248179 (+)
RNA-Seq Expression	Cmc07g0190241
Synteny	Cmc07g0190241

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAGATGGGTCAATGCGTTTGTGCATTGACTATAGAGAGTTGAACAAGGTGATGGTCAAGAAAAAGTATCCACTATCTAGAATTGATGATTTGTTTGACCAACTACAAGGAACAACTGTATTCTCTAAGATTAATTTAAGTTTCAATTACCACCAATTGAGGATTAAAGATAGTGACATTCCTAAGACTATCTTTTGTTCCAGATATGAACATTATGAGTTCATAGTGATGTCTTTTGGATTGACAAATGCTTCTATTGTATTCATGGATTTGATGAACAAGGAGTTTAAAGATTTTTTAGACACTTTTTATGATAGTTTTTATTGA

mRNA sequence

ATGAAGAAAGATGGGTCAATGCGTTTGTGCATTGACTATAGAGAGTTGAACAAGGTGATGGTCAAGAAAAAGTATCCACTATCTAGAATTGATGATTTGTTTGACCAACTACAAGGAACAACTGTATTCTCTAAGATTAATTTAAGTTTCAATTACCACCAATTGAGGATTAAAGATAGTGACATTCCTAAGACTATCTTTTGTTCCAGATATGAACATTATGAGTTCATAGTGATGTCTTTTGGATTGACAAATGCTTCTATTGTATTCATGGATTTGATGAACAAGGAGTTTAAAGATTTTTTAGACACTTTTTATGATAGTTTTTATTGA

Coding sequence (CDS)

ATGAAGAAAGATGGGTCAATGCGTTTGTGCATTGACTATAGAGAGTTGAACAAGGTGATGGTCAAGAAAAAGTATCCACTATCTAGAATTGATGATTTGTTTGACCAACTACAAGGAACAACTGTATTCTCTAAGATTAATTTAAGTTTCAATTACCACCAATTGAGGATTAAAGATAGTGACATTCCTAAGACTATCTTTTGTTCCAGATATGAACATTATGAGTTCATAGTGATGTCTTTTGGATTGACAAATGCTTCTATTGTATTCATGGATTTGATGAACAAGGAGTTTAAAGATTTTTTAGACACTTTTTATGATAGTTTTTATTGA

Protein sequence

MKKDGSMRLCIDYRELNKVMVKKKYPLSRIDDLFDQLQGTTVFSKINLSFNYHQLRIKDSDIPKTIFCSRYEHYEFIVMSFGLTNASIVFMDLMNKEFKDFLDTFYDSFY

Homology

[Close]

BLAST of Cmc07g0190241 vs. NCBI nr
Match: KAA0036185.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 181.0 bits (458), Expect = 5.5e-42
Identity = 87/104 (83.65%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 2   KKDGSMRLCIDYRELNKVMVKKKYPLSRIDDLFDQLQGTTVFSKINLSFNYHQLRIKDSD 61
           KKDGSMRLCIDYRELNKV VK +YPL RIDDLFDQLQGTTVFSKINL   YHQLRIKD D
Sbjct: 306 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGTTVFSKINLRSEYHQLRIKDGD 365

Query: 62  IPKTIFCSRYEHYEFIVMSFGLTNASIVFMDLMNKEFKDFLDTF 106
           +PKT F SRY HYEFIVMSFGLTNAS+VF+DLMNK F++FLDTF
Sbjct: 366 VPKTAFRSRYGHYEFIVMSFGLTNASVVFIDLMNKVFREFLDTF 409

[Close]

BLAST of Cmc07g0190241 vs. NCBI nr
Match: TYK19730.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 181.0 bits (458), Expect = 5.5e-42
Identity = 87/104 (83.65%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 2   KKDGSMRLCIDYRELNKVMVKKKYPLSRIDDLFDQLQGTTVFSKINLSFNYHQLRIKDSD 61
           KKDGSMRLCIDYRELNKV VK +YPL RIDDLFDQLQGTTVFSKINL   YHQLRIKD D
Sbjct: 306 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGTTVFSKINLRSEYHQLRIKDGD 365

Query: 62  IPKTIFCSRYEHYEFIVMSFGLTNASIVFMDLMNKEFKDFLDTF 106
           +PKT F SRY HYEFIVMSFGLTNAS+VF+DLMNK F++FLDTF
Sbjct: 366 VPKTAFRSRYGHYEFIVMSFGLTNASVVFIDLMNKVFREFLDTF 409

[Close]

BLAST of Cmc07g0190241 vs. NCBI nr
Match: KAA0038896.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 2.1e-41
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 2   KKDGSMRLCIDYRELNKVMVKKKYPLSRIDDLFDQLQGTTVFSKINLSFNYHQLRIKDSD 61
           KKDGSMRLCIDYRELNKV VK +YPLSRIDDLFDQLQG TVFSKINL   YHQLRI+D D
Sbjct: 570 KKDGSMRLCIDYRELNKVRVKNRYPLSRIDDLFDQLQGATVFSKINLRSGYHQLRIRDGD 629

Query: 62  IPKTIFCSRYEHYEFIVMSFGLTNASIVFMDLMNKEFKDFLDTF 106
           IPKT F SRY HYEF+VMSFGLTNA  VFMDLMNK FKDFLD+F
Sbjct: 630 IPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNKVFKDFLDSF 673

[Close]

BLAST of Cmc07g0190241 vs. NCBI nr
Match: KAA0047209.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 178.7 bits (452), Expect = 2.7e-41
Identity = 85/104 (81.73%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 2    KKDGSMRLCIDYRELNKVMVKKKYPLSRIDDLFDQLQGTTVFSKINLSFNYHQLRIKDSD 61
            KKDGSMRLCIDYRELNKV VK +YPL RIDDLFDQLQG TVFSKI+L   YHQLRIKD D
Sbjct: 1158 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGD 1217

Query: 62   IPKTIFCSRYEHYEFIVMSFGLTNASIVFMDLMNKEFKDFLDTF 106
            +PKT FCSRY HYEFIVMSFGLTNA  VFMDLMN+ F++FLDTF
Sbjct: 1218 VPKTAFCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTF 1261

[Close]

BLAST of Cmc07g0190241 vs. NCBI nr
Match: KAA0063140.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27515.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 3.5e-41
Identity = 86/103 (83.50%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 2   KKDGSMRLCIDYRELNKVMVKKKYPLSRIDDLFDQLQGTTVFSKINLSFNYHQLRIKDSD 61
           KKDGSMRLCIDYRELNKV VK +YPL RIDDLFDQLQG TVFSKI+L   YHQLRI+DSD
Sbjct: 267 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRLGYHQLRIRDSD 326

Query: 62  IPKTIFCSRYEHYEFIVMSFGLTNASIVFMDLMNKEFKDFLDT 105
           IPKT FCSRYEHY+FIVMSFGLTNA  VFMDLMN+ FKDFL T
Sbjct: 327 IPKTAFCSRYEHYKFIVMSFGLTNAPAVFMDLMNRVFKDFLYT 369

[Close]

BLAST of Cmc07g0190241 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-22
Identity = 52/100 (52.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 6   SMRLCIDYRELNKVMVKKKYPLSRIDDLFDQLQGTTVFSKINLSFNYHQLRIKDSDIPKT 65
           S+R+CIDYR L KV +K KYP+ R+DDLFD+L   T F+K++L   Y Q+RI   D PKT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 66  IFCSRYEHYEFIVMSFGLTNASIVFMDLMNKEFKDFLDTF 106
              +RY  +EF VM FGLTNA   F +LMN    ++LD F
Sbjct: 65  TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHF 104

[Close]

BLAST of Cmc07g0190241 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-16
Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 2   KKDGSMRLCIDYRELNKVMVKKKYPLSRIDDLFDQLQGTTVFSKINLSFNYHQLRIKDSD 61
           KKDG+ RLC+DYR LNK  +   +PL RID+L  ++    +F+ ++L   YHQ+ ++  D
Sbjct: 641 KKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKD 700

Query: 62  IPKTIFCSRYEHYEFIVMSFGLTNASIVFMDLMNKEFKD--FLDTFYD 108
             KT F +    YE+ VM FGL NA   F   M   F+D  F++ + D
Sbjct: 701 RYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLD 748

[Close]

BLAST of Cmc07g0190241 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-16
Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 2   KKDGSMRLCIDYRELNKVMVKKKYPLSRIDDLFDQLQGTTVFSKINLSFNYHQLRIKDSD 61
           KKDG+ RLC+DYR LNK  +   +PL RID+L  ++    +F+ ++L   YHQ+ ++  D
Sbjct: 667 KKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKD 726

Query: 62  IPKTIFCSRYEHYEFIVMSFGLTNASIVFMDLMNKEFKD--FLDTFYD 108
             KT F +    YE+ VM FGL NA   F   M   F+D  F++ + D
Sbjct: 727 RYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLD 774

[Close]

BLAST of Cmc07g0190241 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.2e-13
Identity = 33/96 (34.38%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 8   RLCIDYRELNKVMVKKKYPLSRIDDLFDQLQGTTVFSKINLSFNYHQLRIKDSDIPKTIF 67
           R+ IDYR+LN++ +  +YP+  +D++  +L     F+ I+L+  +HQ+ + +  I KT F
Sbjct: 262 RVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAF 321

Query: 68  CSRYEHYEFIVMSFGLTNASIVFMDLMNKEFKDFLD 104
            ++  HYE++ M FGL NA   F   MN   +  L+
Sbjct: 322 STKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLN 357

[Close]

BLAST of Cmc07g0190241 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-12
Identity = 35/106 (33.02%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 2   KKDGS----MRLCIDYRELNKVMVKKKYPLSRIDDLFDQLQGTTVFSKINLSFNYHQLRI 61
           K+D S     R+ IDYR+LN++ V  ++P+  +D++  +L     F+ I+L+  +HQ+ +
Sbjct: 253 KQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEM 312

Query: 62  KDSDIPKTIFCSRYEHYEFIVMSFGLTNASIVFMDLMNKEFKDFLD 104
               + KT F +++ HYE++ M FGL NA   F   MN   +  L+
Sbjct: 313 DPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLN 358

[Close]

BLAST of Cmc07g0190241 vs. ExPASy TrEMBL
Match: A0A5D3D8E1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold214G00330 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.6e-42
Identity = 87/104 (83.65%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 2   KKDGSMRLCIDYRELNKVMVKKKYPLSRIDDLFDQLQGTTVFSKINLSFNYHQLRIKDSD 61
           KKDGSMRLCIDYRELNKV VK +YPL RIDDLFDQLQGTTVFSKINL   YHQLRIKD D
Sbjct: 306 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGTTVFSKINLRSEYHQLRIKDGD 365

Query: 62  IPKTIFCSRYEHYEFIVMSFGLTNASIVFMDLMNKEFKDFLDTF 106
           +PKT F SRY HYEFIVMSFGLTNAS+VF+DLMNK F++FLDTF
Sbjct: 366 VPKTAFRSRYGHYEFIVMSFGLTNASVVFIDLMNKVFREFLDTF 409

[Close]

BLAST of Cmc07g0190241 vs. ExPASy TrEMBL
Match: A0A5A7T3W9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold69G00520 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.6e-42
Identity = 87/104 (83.65%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 2   KKDGSMRLCIDYRELNKVMVKKKYPLSRIDDLFDQLQGTTVFSKINLSFNYHQLRIKDSD 61
           KKDGSMRLCIDYRELNKV VK +YPL RIDDLFDQLQGTTVFSKINL   YHQLRIKD D
Sbjct: 306 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGTTVFSKINLRSEYHQLRIKDGD 365

Query: 62  IPKTIFCSRYEHYEFIVMSFGLTNASIVFMDLMNKEFKDFLDTF 106
           +PKT F SRY HYEFIVMSFGLTNAS+VF+DLMNK F++FLDTF
Sbjct: 366 VPKTAFRSRYGHYEFIVMSFGLTNASVVFIDLMNKVFREFLDTF 409

[Close]

BLAST of Cmc07g0190241 vs. ExPASy TrEMBL
Match: A0A5A7T9X0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1170G00640 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.0e-41
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 2   KKDGSMRLCIDYRELNKVMVKKKYPLSRIDDLFDQLQGTTVFSKINLSFNYHQLRIKDSD 61
           KKDGSMRLCIDYRELNKV VK +YPLSRIDDLFDQLQG TVFSKINL   YHQLRI+D D
Sbjct: 570 KKDGSMRLCIDYRELNKVRVKNRYPLSRIDDLFDQLQGATVFSKINLRSGYHQLRIRDGD 629

Query: 62  IPKTIFCSRYEHYEFIVMSFGLTNASIVFMDLMNKEFKDFLDTF 106
           IPKT F SRY HYEF+VMSFGLTNA  VFMDLMNK FKDFLD+F
Sbjct: 630 IPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNKVFKDFLDSF 673

[Close]

BLAST of Cmc07g0190241 vs. ExPASy TrEMBL
Match: A0A5A7U149 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold83G00930 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.3e-41
Identity = 85/104 (81.73%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 2    KKDGSMRLCIDYRELNKVMVKKKYPLSRIDDLFDQLQGTTVFSKINLSFNYHQLRIKDSD 61
            KKDGSMRLCIDYRELNKV VK +YPL RIDDLFDQLQG TVFSKI+L   YHQLRIKD D
Sbjct: 1158 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGD 1217

Query: 62   IPKTIFCSRYEHYEFIVMSFGLTNASIVFMDLMNKEFKDFLDTF 106
            +PKT FCSRY HYEFIVMSFGLTNA  VFMDLMN+ F++FLDTF
Sbjct: 1218 VPKTAFCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTF 1261

[Close]

BLAST of Cmc07g0190241 vs. ExPASy TrEMBL
Match: A0A5D3BA18 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold535G00290 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 2   KKDGSMRLCIDYRELNKVMVKKKYPLSRIDDLFDQLQGTTVFSKINLSFNYHQLRIKDSD 61
           KKDGSMRLCIDYRELNKV VK +YPL RIDDLFDQLQG TVFSKI+L   YHQLRI+DSD
Sbjct: 447 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSD 506

Query: 62  IPKTIFCSRYEHYEFIVMSFGLTNASIVFMDLMNKEFKDFLDTF 106
           IP T F SRYEHYEFIVMSFGLTNAS  FMDLMN+ FKDFLDTF
Sbjct: 507 IPMTAFRSRYEHYEFIVMSFGLTNASAAFMDLMNRVFKDFLDTF 550

The following BLAST results are available for this feature:

BLAST of Cmc07g0190241 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036185.1	5.5e-42	83.65	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK19730.1	5.5e-42	83.65	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0038896.1	2.1e-41	83.65	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0047209.1	2.7e-41	81.73	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0063140.1	3.5e-41	83.50	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27515.1 ty3-gyp...	[more]

BLAST of Cmc07g0190241 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31843	1.3e-22	52.00	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q99315	1.1e-16	39.81	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.1e-16	39.81	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P20825	7.2e-13	34.38	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	1.6e-12	33.02	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]

BLAST of Cmc07g0190241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D8E1	2.6e-42	83.65	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21...	[more]
A0A5A7T3W9	2.6e-42	83.65	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold69...	[more]
A0A5A7T9X0	1.0e-41	83.65	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11...	[more]
A0A5A7U149	1.3e-41	81.73	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold83...	[more]
A0A5D3BA18	1.7e-41	83.65	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold535G00290 PE...	[more]

BLAST of Cmc07g0190241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 25..101 e-value: 1.1E-35 score: 124.9
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..85 e-value: 1.1E-35 score: 124.9
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..96
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..96
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..105 e-value: 1.20714E-38 score: 125.786
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0190241.1	Cmc07g0190241.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding