Cmc07g0189901 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0189901
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr07: 8826209 .. 8826643 (+)
RNA-Seq Expression	Cmc07g0189901
Synteny	Cmc07g0189901

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTTGGTTTGACTAATGCTCCTGTAGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACTCGCTCGTCATAGTTTTCATTGACGACATTTTGATTTACTCTAAGACTGAGGCTGAGCATGAGGAGCATTTGCACCAGGTTTTGGAGACCCTTCGATCCAATAAGCTGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTGACTTTCCTCGGCCACGTGGTTTCCAGTGAGGGAGTTTCTTTGGACCCAGCAAAGATCGAAGCAGTTACCAATTGGCCTCGACCGTCTACGGTTAGCGAGATTCGTAGTTTCCTGGGTTTGGCAAGTTACTACAGGAGGTTCGTGGAAGACTTTTCACGTATAGCCAGTCCCTTGACCCAGTTGACCAGGAAGGGAACTCCTTTCGTTTGA

mRNA sequence

ATGTCTTTTGGTTTGACTAATGCTCCTGTAGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACTCGCTCGTCATAGTTTTCATTGACGACATTTTGATTTACTCTAAGACTGAGGCTGAGCATGAGGAGCATTTGCACCAGGTTTTGGAGACCCTTCGATCCAATAAGCTGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTGACTTTCCTCGGCCACGTGGTTTCCAGTGAGGGAGTTTCTTTGGACCCAGCAAAGATCGAAGCAGTTACCAATTGGCCTCGACCGTCTACGGTTAGCGAGATTCGTAGTTTCCTGGGTTTGGCAAGTTACTACAGGAGGTTCGTGGAAGACTTTTCACGTATAGCCAGTCCCTTGACCCAGTTGACCAGGAAGGGAACTCCTTTCGTTTGA

Coding sequence (CDS)

ATGTCTTTTGGTTTGACTAATGCTCCTGTAGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACTCGCTCGTCATAGTTTTCATTGACGACATTTTGATTTACTCTAAGACTGAGGCTGAGCATGAGGAGCATTTGCACCAGGTTTTGGAGACCCTTCGATCCAATAAGCTGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTGACTTTCCTCGGCCACGTGGTTTCCAGTGAGGGAGTTTCTTTGGACCCAGCAAAGATCGAAGCAGTTACCAATTGGCCTCGACCGTCTACGGTTAGCGAGATTCGTAGTTTCCTGGGTTTGGCAAGTTACTACAGGAGGTTCGTGGAAGACTTTTCACGTATAGCCAGTCCCTTGACCCAGTTGACCAGGAAGGGAACTCCTTTCGTTTGA

Protein sequence

MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV

Homology

[Close]

BLAST of Cmc07g0189901 vs. NCBI nr
Match: KAA0064255.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa] >TYK18624.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 287.7 bits (735), Expect = 5.4e-74
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK 60
           MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK
Sbjct: 224 MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK 283

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYR 120
           LYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYR
Sbjct: 284 LYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYR 343

Query: 121 RFVEDFSRIASPLTQLTRKGTPFV 145
           RFVEDFSRIASPLTQLTRKGTPFV
Sbjct: 344 RFVEDFSRIASPLTQLTRKGTPFV 367

[Close]

BLAST of Cmc07g0189901 vs. NCBI nr
Match: KAA0063098.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 279.6 bits (714), Expect = 1.5e-71
Identity = 138/144 (95.83%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK 60
           MSFGLTNAP VFMDLMNRVFKDFLDS VIVFIDDILIYSKTEAEHEEHLHQVLETLR+NK
Sbjct: 713 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 772

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVS+DPAKIEAVTNWPRPSTVSEIRSFLGLA YYR
Sbjct: 773 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 832

Query: 121 RFVEDFSRIASPLTQLTRKGTPFV 145
           RFVEDFSRIASPLTQLTRKGTPFV
Sbjct: 833 RFVEDFSRIASPLTQLTRKGTPFV 856

[Close]

BLAST of Cmc07g0189901 vs. NCBI nr
Match: KAA0063793.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 279.6 bits (714), Expect = 1.5e-71
Identity = 138/144 (95.83%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK 60
           MSFGLTNAP VFMDLMNRVFKDFLDS VIVFIDDILIYSKTEAEHEEHLHQVLETLR+NK
Sbjct: 251 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 310

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVS+DPAKIEAVTNWPRPSTVSEIRSFLGLA YYR
Sbjct: 311 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 370

Query: 121 RFVEDFSRIASPLTQLTRKGTPFV 145
           RFVEDFSRIASPLTQLTRKGTPFV
Sbjct: 371 RFVEDFSRIASPLTQLTRKGTPFV 394

[Close]

BLAST of Cmc07g0189901 vs. NCBI nr
Match: KAA0066951.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 279.6 bits (714), Expect = 1.5e-71
Identity = 138/144 (95.83%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK 60
           MSFGLTNAP VFMDLMNRVFKDFLDS VIVFIDDILIYSKTEAEHEEHLHQVLETLR+NK
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVS+DPAKIEAVTNWPRPSTVSEIRSFLGLA YYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFVEDFSRIASPLTQLTRKGTPFV 145
           RFVEDFSRIASPLTQLTRKGTPFV
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFV 664

[Close]

BLAST of Cmc07g0189901 vs. NCBI nr
Match: KAA0032541.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 279.6 bits (714), Expect = 1.5e-71
Identity = 138/144 (95.83%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK 60
           MSFGLTNAP VFMDLMNRVFKDFLDS VIVFIDDILIYSKTEAEHEEHLHQVLETLR+NK
Sbjct: 685 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 744

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVS+DPAKIEAVTNWPRPSTVSEIRSFLGLA YYR
Sbjct: 745 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 804

Query: 121 RFVEDFSRIASPLTQLTRKGTPFV 145
           RFVEDFSRIASPLTQLTRKGTPFV
Sbjct: 805 RFVEDFSRIASPLTQLTRKGTPFV 828

[Close]

BLAST of Cmc07g0189901 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.8e-27
Identity = 57/139 (41.01%), Postives = 88/139 (63.31%), Query Frame = 0


Query: 1   MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK 60
           M FGL NAP  F   MN + +  L+   +V++DDI+++S +  EH + L  V E L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYR 120
           L  +  KCEF  ++ TFLGHV++ +G+  +P KIEA+  +P P+   EI++FLGL  YYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVEDFSRIASPLTQLTRK 140
           +F+ +F+ IA P+T+  +K
Sbjct: 454 KFIPNFADIAKPMTKCLKK 472

[Close]

BLAST of Cmc07g0189901 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.6e-26
Identity = 55/141 (39.01%), Postives = 86/141 (60.99%), Query Frame = 0


Query: 1   MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK 60
           M FGL NAP  F   MN + +  L+   +V++DDI+I+S +  EH   +  V   L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYR 120
           L  +  KCEF  K+  FLGH+V+ +G+  +P K++A+ ++P P+   EIR+FLGL  YYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVEDFSRIASPLTQLTRKGT 142
           +F+ +++ IA P+T   +K T
Sbjct: 453 KFIPNYADIAKPMTSCLKKRT 473

[Close]

BLAST of Cmc07g0189901 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.4e-26
Identity = 51/138 (36.96%), Postives = 91/138 (65.94%), Query Frame = 0


Query: 1   MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK 60
           + FGL NAP +F  +++ + ++ +  +  V+IDDI+++S+    H ++L  VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYR 120
           L     K  F   +V FLG++V+++G+  DP K+ A++  P P++V E++ FLG+ SYYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVEDFSRIASPLTQLTR 139
           +F++D++++A PLT LTR
Sbjct: 370 KFIQDYAKVAKPLTNLTR 387

[Close]

BLAST of Cmc07g0189901 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-24
Identity = 51/138 (36.96%), Postives = 87/138 (63.04%), Query Frame = 0


Query: 1   MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK 60
           + FGL NA  +F   ++ V ++ +  +  V++DD++I+S+ E++H  H+  VL+ L    
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYR 120
           +     K  F+ + V +LG +VS +G   DP K++A+  +P P  V ++RSFLGLASYYR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFVEDFSRIASPLTQLTR 139
            F++DF+ IA P+T + +
Sbjct: 429 VFIKDFAAIARPITDILK 446

[Close]

BLAST of Cmc07g0189901 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.5e-21
Identity = 49/139 (35.25%), Postives = 83/139 (59.71%), Query Frame = 0


Query: 1   MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK 60
           M +G++ AP  F   +N +  +  +S V+ ++DDILI+SK+E+EH +H+  VL+ L++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYR 120
           L    +KCEF   +V F+G+ +S +G +     I+ V  W +P    E+R FLG  +Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVEDFSRIASPLTQLTRK 140
           +F+   S++  PL  L +K
Sbjct: 654 KFIPKTSQLTHPLNNLLKK 672

[Close]

BLAST of Cmc07g0189901 vs. ExPASy TrEMBL
Match: A0A5D3D515 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001610 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.6e-74
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK 60
           MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK
Sbjct: 224 MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK 283

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYR 120
           LYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYR
Sbjct: 284 LYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYR 343

Query: 121 RFVEDFSRIASPLTQLTRKGTPFV 145
           RFVEDFSRIASPLTQLTRKGTPFV
Sbjct: 344 RFVEDFSRIASPLTQLTRKGTPFV 367

[Close]

BLAST of Cmc07g0189901 vs. ExPASy TrEMBL
Match: A0A5A7V6R2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00070 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.2e-72
Identity = 138/144 (95.83%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK 60
           MSFGLTNAP VFMDLMNRVFKDFLDS VIVFIDDILIYSKTEAEHEEHLHQVLETLR+NK
Sbjct: 251 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 310

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVS+DPAKIEAVTNWPRPSTVSEIRSFLGLA YYR
Sbjct: 311 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 370

Query: 121 RFVEDFSRIASPLTQLTRKGTPFV 145
           RFVEDFSRIASPLTQLTRKGTPFV
Sbjct: 371 RFVEDFSRIASPLTQLTRKGTPFV 394

[Close]

BLAST of Cmc07g0189901 vs. ExPASy TrEMBL
Match: A0A5A7V4E4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00400 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.2e-72
Identity = 138/144 (95.83%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK 60
           MSFGLTNAP VFMDLMNRVFKDFLDS VIVFIDDILIYSKTEAEHEEHLHQVLETLR+NK
Sbjct: 685 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 744

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVS+DPAKIEAVTNWPRPSTVSEIRSFLGLA YYR
Sbjct: 745 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 804

Query: 121 RFVEDFSRIASPLTQLTRKGTPFV 145
           RFVEDFSRIASPLTQLTRKGTPFV
Sbjct: 805 RFVEDFSRIASPLTQLTRKGTPFV 828

[Close]

BLAST of Cmc07g0189901 vs. ExPASy TrEMBL
Match: A0A5A7VMR4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00890 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.2e-72
Identity = 138/144 (95.83%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK 60
           MSFGLTNAP VFMDLMNRVFKDFLDS VIVFIDDILIYSKTEAEHEEHLHQVLETLR+NK
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVS+DPAKIEAVTNWPRPSTVSEIRSFLGLA YYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFVEDFSRIASPLTQLTRKGTPFV 145
           RFVEDFSRIASPLTQLTRKGTPFV
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFV 664

[Close]

BLAST of Cmc07g0189901 vs. ExPASy TrEMBL
Match: A0A5A7V646 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1337G00030 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.2e-72
Identity = 138/144 (95.83%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK 60
           MSFGLTNAP VFMDLMNRVFKDFLDS VIVFIDDILIYSKTEAEHEEHLHQVLETLR+NK
Sbjct: 713 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 772

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVS+DPAKIEAVTNWPRPSTVSEIRSFLGLA YYR
Sbjct: 773 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 832

Query: 121 RFVEDFSRIASPLTQLTRKGTPFV 145
           RFVEDFSRIASPLTQLTRKGTPFV
Sbjct: 833 RFVEDFSRIASPLTQLTRKGTPFV 856

[Close]

BLAST of Cmc07g0189901 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-21
Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 48  HLHQVLETLRSNKLYAKFSKCEFWLKKVTFLG--HVVSSEGVSLDPAKIEAVTNWPRPST 107
           HL  VL+    ++ YA   KC F   ++ +LG  H++S EGVS DPAK+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGT 142
            +E+R FLGL  YYRRFV+++ +I  PLT+L +K +
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS 98

The following BLAST results are available for this feature:

BLAST of Cmc07g0189901 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064255.1	5.4e-74	100.00	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
KAA0063098.1	1.5e-71	95.83	pol protein [Cucumis melo var. makuwa]	[more]
KAA0063793.1	1.5e-71	95.83	pol protein [Cucumis melo var. makuwa]	[more]
KAA0066951.1	1.5e-71	95.83	pol protein [Cucumis melo var. makuwa]	[more]
KAA0032541.1	1.5e-71	95.83	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0189901 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	8.8e-27	41.01	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	2.6e-26	39.01	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	3.4e-26	36.96	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	1.1e-24	36.96	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P0CT41	2.5e-21	35.25	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc07g0189901 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D515	2.6e-74	100.00	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5A7V6R2	7.2e-72	95.83	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82...	[more]
A0A5A7V4E4	7.2e-72	95.83	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72...	[more]
A0A5A7VMR4	7.2e-72	95.83	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7V646	7.2e-72	95.83	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]

BLAST of Cmc07g0189901 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.1e-21	45.83	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..89 e-value: 1.3E-33 score: 117.7
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..144 e-value: 2.8E-20 score: 74.1
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 5.5E-16 score: 58.8
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 9.326595
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 18..141
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 18..141
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 4.11979E-38 score: 125.786
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0189901.1	Cmc07g0189901.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding