Cmc07g0189801 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0189801
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr07: 8551107 .. 8551802 (+)
RNA-Seq Expression	Cmc07g0189801
Synteny	Cmc07g0189801

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCCAGGTTGCACCAAGATGTATAGAACTTTAAAGAAGACTTATTGGTGGCTTGGAATGAAGAAAGAGATAGCTGAATATGTTGATAGATGTTTGATTTGTCAACAGGTTAAACCAGTAAGACAGAGGCTAGGAGGATTTCTTAATCCTTTGCCAGTGCCAGAGTGGAAGTGGAAGCATATTACTATAGATTTTCTGTTTGGATTACCTCGTACATCTAGTGAACATGATTGTATATGGGTAATAGTAGACAGACTCACCAAGACGACACGATTTATACCGGTTAAAGCAACATCTACGTTAGACCATATAGCTAGATTATATGTCGATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAAATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGTTTACAGAAAGCAATGGGAATAGGACTAAAGTTTAGTACATCATTTCATCCCCAAACAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGAGCATGTGTCCTTCAACTTAAAGAAAGTTGGGATACCCACTTGCCACTTATGGAGTTTGCTTATAATAATGGCTATCAGTTTAGTATCGGTAAGGCACCATATGAGGCCTTATATGGAAGACCATGCAGAACTCCTGTGTGCTGGAATGAAGTGGGAGAGTGGAAGTTAGTATCCTGA

mRNA sequence

ATGCATCCAGGTTGCACCAAGATGTATAGAACTTTAAAGAAGACTTATTGGTGGCTTGGAATGAAGAAAGAGATAGCTGAATATGTTGATAGATGTTTGATTTGTCAACAGGTTAAACCAGTAAGACAGAGGCTAGGAGGATTTCTTAATCCTTTGCCAGTGCCAGAGTGGAAGTGGAAGCATATTACTATAGATTTTCTGTTTGGATTACCTCGTACATCTAGTGAACATGATTGTATATGGGTAATAGTAGACAGACTCACCAAGACGACACGATTTATACCGGTTAAAGCAACATCTACGTTAGACCATATAGCTAGATTATATGTCGATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAAATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGTTTACAGAAAGCAATGGGAATAGGACTAAAGTTTAGTACATCATTTCATCCCCAAACAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGAGCATGTGTCCTTCAACTTAAAGAAAGTTGGGATACCCACTTGCCACTTATGGAGTTTGCTTATAATAATGGCTATCAGTTTAGTATCGGTAAGGCACCATATGAGGCCTTATATGGAAGACCATGCAGAACTCCTGTGTGCTGGAATGAAGTGGGAGAGTGGAAGTTAGTATCCTGA

Coding sequence (CDS)

ATGCATCCAGGTTGCACCAAGATGTATAGAACTTTAAAGAAGACTTATTGGTGGCTTGGAATGAAGAAAGAGATAGCTGAATATGTTGATAGATGTTTGATTTGTCAACAGGTTAAACCAGTAAGACAGAGGCTAGGAGGATTTCTTAATCCTTTGCCAGTGCCAGAGTGGAAGTGGAAGCATATTACTATAGATTTTCTGTTTGGATTACCTCGTACATCTAGTGAACATGATTGTATATGGGTAATAGTAGACAGACTCACCAAGACGACACGATTTATACCGGTTAAAGCAACATCTACGTTAGACCATATAGCTAGATTATATGTCGATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAAATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGTTTACAGAAAGCAATGGGAATAGGACTAAAGTTTAGTACATCATTTCATCCCCAAACAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGAGCATGTGTCCTTCAACTTAAAGAAAGTTGGGATACCCACTTGCCACTTATGGAGTTTGCTTATAATAATGGCTATCAGTTTAGTATCGGTAAGGCACCATATGAGGCCTTATATGGAAGACCATGCAGAACTCCTGTGTGCTGGAATGAAGTGGGAGAGTGGAAGTTAGTATCCTGA

Protein sequence

MHPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWKHITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKESWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTPVCWNEVGEWKLVS

Homology

[Close]

BLAST of Cmc07g0189801 vs. NCBI nr
Match: TYK01016.1 (Gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 501.9 bits (1291), Expect = 2.9e-138
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MHPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK 60
           MHPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK
Sbjct: 1   MHPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK 60

Query: 61  HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP 120
           HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP
Sbjct: 61  HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP 120

Query: 121 VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 180
           VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK
Sbjct: 121 VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 180

Query: 181 ESWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTPVCWNEVGEWKLVS 232
           ESWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTPVCWNEVGEWKLVS
Sbjct: 181 ESWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTPVCWNEVGEWKLVS 231

[Close]

BLAST of Cmc07g0189801 vs. NCBI nr
Match: KAA0064280.1 (Gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 500.4 bits (1287), Expect = 8.5e-138
Identity = 230/231 (99.57%), Postives = 230/231 (99.57%), Query Frame = 0


Query: 1   MHPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK 60
           MHPGCTKMYRTLKKTYWW GMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK
Sbjct: 1   MHPGCTKMYRTLKKTYWWFGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK 60

Query: 61  HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP 120
           HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP
Sbjct: 61  HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP 120

Query: 121 VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 180
           VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK
Sbjct: 121 VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 180

Query: 181 ESWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTPVCWNEVGEWKLVS 232
           ESWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTPVCWNEVGEWKLVS
Sbjct: 181 ESWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTPVCWNEVGEWKLVS 231

[Close]

BLAST of Cmc07g0189801 vs. NCBI nr
Match: KAA0053246.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 453.8 bits (1166), Expect = 9.2e-124
Identity = 211/230 (91.74%), Postives = 217/230 (94.35%), Query Frame = 0


Query: 1   MHPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK 60
           MHPG TKMYRTLKKTYWW GMK+EIAEYVDRCLICQQVKPVRQR GGFLNPLPVPEWKW+
Sbjct: 210 MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWE 269

Query: 61  HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP 120
           HIT+DFLFGLPRTSS HD IWVIVDRLTKTTRFIP+K TSTLD +ARLYVDKIVSQYGVP
Sbjct: 270 HITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVP 329

Query: 121 VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 180
           VSIVS+RDPRFTSKFWPSLQKAMG GLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK
Sbjct: 330 VSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 389

Query: 181 ESWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTPVCWNEVGEWKLV 231
            SWDTHLPLMEFAYNN YQ SIG APYEALYGRPCRTPVCWNEVGE KLV
Sbjct: 390 GSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLV 439

[Close]

BLAST of Cmc07g0189801 vs. NCBI nr
Match: KAA0050493.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 453.8 bits (1166), Expect = 9.2e-124
Identity = 211/230 (91.74%), Postives = 217/230 (94.35%), Query Frame = 0


Query: 1   MHPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK 60
           MHPG TKMYRTLKKTYWW GMK+EIAEYVDRCLICQQVKPVRQR GGFLNPLPVPEWKW+
Sbjct: 732 MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWE 791

Query: 61  HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP 120
           HIT+DFLFGLPRTSS HD IWVIVDRLTKTTRFIP+K TSTLD +ARLYVDKIVSQYGVP
Sbjct: 792 HITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVP 851

Query: 121 VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 180
           VSIVS+RDPRFTSKFWPSLQKAMG GLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK
Sbjct: 852 VSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 911

Query: 181 ESWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTPVCWNEVGEWKLV 231
            SWDTHLPLMEFAYNN YQ SIG APYEALYGRPCRTPVCWNEVGE KLV
Sbjct: 912 GSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLV 961

[Close]

BLAST of Cmc07g0189801 vs. NCBI nr
Match: KAA0059912.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 453.8 bits (1166), Expect = 9.2e-124
Identity = 211/230 (91.74%), Postives = 217/230 (94.35%), Query Frame = 0


Query: 1   MHPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK 60
           MHPG TKMYRTLKKTYWW GMK+EIAEYVDRCLICQQVKPVRQR GGFLNPLPVPEWKW+
Sbjct: 400 MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWE 459

Query: 61  HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP 120
           HIT+DFLFGLPRTSS HD IWVIVDRLTKTTRFIP+K TSTLD +ARLYVDKIVSQYGVP
Sbjct: 460 HITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVP 519

Query: 121 VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 180
           VSIVS+RDPRFTSKFWPSLQKAMG GLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK
Sbjct: 520 VSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 579

Query: 181 ESWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTPVCWNEVGEWKLV 231
            SWDTHLPLMEFAYNN YQ SIG APYEALYGRPCRTPVCWNEVGE KLV
Sbjct: 580 GSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLV 629

[Close]

BLAST of Cmc07g0189801 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 4.5e-41
Identity = 87/217 (40.09%), Postives = 124/217 (57.14%), Query Frame = 0


Query: 2    HPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWKH 61
            H G T     +   Y+W  ++  I +Y+  C+ CQ +K  R RL G L PLP+ E +W  
Sbjct: 1138 HFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLD 1197

Query: 62   ITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVPV 121
            I++DF+ GLP TS+  + I V+VDR +K   FI  + T     +  L    I S +G P 
Sbjct: 1198 ISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPR 1257

Query: 122  SIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKE 181
            +I S+RD R T+  +  L K +GI    S++ HPQTDGQSERTIQTL  +LRA V    +
Sbjct: 1258 TITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQ 1317

Query: 182  SWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTP 219
            +W  +LP +EF YN+    ++GK+P+E   G    TP
Sbjct: 1318 NWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTP 1354

[Close]

BLAST of Cmc07g0189801 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 167.9 bits (424), Expect = 1.3e-40
Identity = 86/217 (39.63%), Postives = 123/217 (56.68%), Query Frame = 0


Query: 2    HPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWKH 61
            H G T     +   Y+W  ++  I +Y+  C+ CQ +K  R RL G L PLP+ E +W  
Sbjct: 1112 HFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLD 1171

Query: 62   ITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVPV 121
            I++DF+ GLP TS+  + I V+VDR +K   FI  + T     +  L    I S +G P 
Sbjct: 1172 ISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPR 1231

Query: 122  SIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKE 181
            +I S+RD R T+  +  L K +GI    S++ HPQTDGQSERTIQTL  +LRA      +
Sbjct: 1232 TITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQ 1291

Query: 182  SWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTP 219
            +W  +LP +EF YN+    ++GK+P+E   G    TP
Sbjct: 1292 NWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTP 1328

[Close]

BLAST of Cmc07g0189801 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-34
Identity = 68/211 (32.23%), Postives = 117/211 (55.45%), Query Frame = 0


Query: 1    MHPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK 60
            +HPG   +   + + + W G++K+I EYV  C  CQ  K    +  G L P+P  E  W+
Sbjct: 926  IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWE 985

Query: 61   HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP 120
             +++DF+  LP  SS ++ ++V+VDR +K    +P   + T +  AR++  ++++ +G P
Sbjct: 986  SLSMDFITALPE-SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1045

Query: 121  VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 180
              I+++ D  FTS+ W          +KFS  + PQTDGQ+ERT QT+E +LR       
Sbjct: 1046 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1105

Query: 181  ESWDTHLPLMEFAYNNGYQFSIGKAPYEALY 212
             +W  H+ L++ +YNN    +    P+E ++
Sbjct: 1106 NTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc07g0189801 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-34
Identity = 68/211 (32.23%), Postives = 117/211 (55.45%), Query Frame = 0


Query: 1    MHPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK 60
            +HPG   +   + + + W G++K+I EYV  C  CQ  K    +  G L P+P  E  W+
Sbjct: 926  IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWE 985

Query: 61   HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP 120
             +++DF+  LP  SS ++ ++V+VDR +K    +P   + T +  AR++  ++++ +G P
Sbjct: 986  SLSMDFITALPE-SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1045

Query: 121  VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 180
              I+++ D  FTS+ W          +KFS  + PQTDGQ+ERT QT+E +LR       
Sbjct: 1046 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1105

Query: 181  ESWDTHLPLMEFAYNNGYQFSIGKAPYEALY 212
             +W  H+ L++ +YNN    +    P+E ++
Sbjct: 1106 NTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc07g0189801 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-34
Identity = 68/211 (32.23%), Postives = 117/211 (55.45%), Query Frame = 0


Query: 1    MHPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK 60
            +HPG   +   + + + W G++K+I EYV  C  CQ  K    +  G L P+P  E  W+
Sbjct: 926  IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWE 985

Query: 61   HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP 120
             +++DF+  LP  SS ++ ++V+VDR +K    +P   + T +  AR++  ++++ +G P
Sbjct: 986  SLSMDFITALPE-SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1045

Query: 121  VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 180
              I+++ D  FTS+ W          +KFS  + PQTDGQ+ERT QT+E +LR       
Sbjct: 1046 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1105

Query: 181  ESWDTHLPLMEFAYNNGYQFSIGKAPYEALY 212
             +W  H+ L++ +YNN    +    P+E ++
Sbjct: 1106 NTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc07g0189801 vs. ExPASy TrEMBL
Match: A0A5D3BRZ5 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00160 PE=4 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 1.4e-138
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MHPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK 60
           MHPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK
Sbjct: 1   MHPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK 60

Query: 61  HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP 120
           HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP
Sbjct: 61  HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP 120

Query: 121 VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 180
           VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK
Sbjct: 121 VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 180

Query: 181 ESWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTPVCWNEVGEWKLVS 232
           ESWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTPVCWNEVGEWKLVS
Sbjct: 181 ESWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTPVCWNEVGEWKLVS 231

[Close]

BLAST of Cmc07g0189801 vs. ExPASy TrEMBL
Match: A0A5A7VAM6 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G002530 PE=4 SV=1)

HSP 1 Score: 500.4 bits (1287), Expect = 4.1e-138
Identity = 230/231 (99.57%), Postives = 230/231 (99.57%), Query Frame = 0


Query: 1   MHPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK 60
           MHPGCTKMYRTLKKTYWW GMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK
Sbjct: 1   MHPGCTKMYRTLKKTYWWFGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK 60

Query: 61  HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP 120
           HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP
Sbjct: 61  HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP 120

Query: 121 VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 180
           VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK
Sbjct: 121 VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 180

Query: 181 ESWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTPVCWNEVGEWKLVS 232
           ESWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTPVCWNEVGEWKLVS
Sbjct: 181 ESWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTPVCWNEVGEWKLVS 231

[Close]

BLAST of Cmc07g0189801 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 4.4e-124
Identity = 211/230 (91.74%), Postives = 217/230 (94.35%), Query Frame = 0


Query: 1    MHPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK 60
            MHPG TKMYRTLKKTYWW GMK+EIAEYVDRCLICQQVKPVRQR GGFLNPLPVPEWKW+
Sbjct: 1140 MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWE 1199

Query: 61   HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP 120
            HIT+DFLFGLPRTSS HD IWVIVDRLTKTTRFIP+K TSTLD +ARLYVDKIVSQYGVP
Sbjct: 1200 HITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVP 1259

Query: 121  VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 180
            VSIVS+RDPRFTSKFWPSLQKAMG GLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK
Sbjct: 1260 VSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 1319

Query: 181  ESWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTPVCWNEVGEWKLV 231
             SWDTHLPLMEFAYNN YQ SIG APYEALYGRPCRTPVCWNEVGE KLV
Sbjct: 1320 GSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLV 1369

[Close]

BLAST of Cmc07g0189801 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 4.4e-124
Identity = 211/230 (91.74%), Postives = 217/230 (94.35%), Query Frame = 0


Query: 1    MHPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK 60
            MHPG TKMYRTLKKTYWW GMK+EIAEYVDRCLICQQVKPVRQR GGFLNPLPVPEWKW+
Sbjct: 1178 MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWE 1237

Query: 61   HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP 120
            HIT+DFLFGLPRTSS HD IWVIVDRLTKTTRFIP+K TSTLD +ARLYVDKIVSQYGVP
Sbjct: 1238 HITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVP 1297

Query: 121  VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 180
            VSIVS+RDPRFTSKFWPSLQKAMG GLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK
Sbjct: 1298 VSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 1357

Query: 181  ESWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTPVCWNEVGEWKLV 231
             SWDTHLPLMEFAYNN YQ SIG APYEALYGRPCRTPVCWNEVGE KLV
Sbjct: 1358 GSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLV 1407

[Close]

BLAST of Cmc07g0189801 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 4.4e-124
Identity = 211/230 (91.74%), Postives = 217/230 (94.35%), Query Frame = 0


Query: 1    MHPGCTKMYRTLKKTYWWLGMKKEIAEYVDRCLICQQVKPVRQRLGGFLNPLPVPEWKWK 60
            MHPG TKMYRTLKKTYWW GMK+EIAEYVDRCLICQQVKPVRQR GGFLNPLPVPEWKW+
Sbjct: 1178 MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWE 1237

Query: 61   HITIDFLFGLPRTSSEHDCIWVIVDRLTKTTRFIPVKATSTLDHIARLYVDKIVSQYGVP 120
            HIT+DFLFGLPRTSS HD IWVIVDRLTKTTRFIP+K TSTLD +ARLYVDKIVSQYGVP
Sbjct: 1238 HITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVP 1297

Query: 121  VSIVSNRDPRFTSKFWPSLQKAMGIGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 180
            VSIVS+RDPRFTSKFWPSLQKAMG GLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK
Sbjct: 1298 VSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLK 1357

Query: 181  ESWDTHLPLMEFAYNNGYQFSIGKAPYEALYGRPCRTPVCWNEVGEWKLV 231
             SWDTHLPLMEFAYNN YQ SIG APYEALYGRPCRTPVCWNEVGE KLV
Sbjct: 1358 GSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLV 1407

The following BLAST results are available for this feature:

BLAST of Cmc07g0189801 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01016.1	2.9e-138	100.00	Gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0064280.1	8.5e-138	99.57	Gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0053246.1	9.2e-124	91.74	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0050493.1	9.2e-124	91.74	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0059912.1	9.2e-124	91.74	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0189801 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7LHG5	4.5e-41	40.09	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	1.3e-40	39.63	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	1.1e-34	32.23	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.1e-34	32.23	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.1e-34	32.23	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc07g0189801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BRZ5	1.4e-138	100.00	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7VAM6	4.1e-138	99.57	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7U2V7	4.4e-124	91.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BS67	4.4e-124	91.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]
A0A5D3BHI1	4.4e-124	91.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of Cmc07g0189801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 2..40 e-value: 2.3E-14 score: 53.2
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 49..228 e-value: 9.5E-46 score: 157.6
None	No IPR available	GENE3D	1.10.340.70		coord: 1..39 e-value: 4.5E-11 score: 44.8
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 1..206
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 49..214 score: 17.779659
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 50..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0189801.1	Cmc07g0189801.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding