Cmc06g0175851 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0175851
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr06: 32689454 .. 32689870 (-)
RNA-Seq Expression	Cmc06g0175851
Synteny	Cmc06g0175851

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGACTTTGCATTGATTACAGAGAGTTGAATAAGGTAACAGTCAAGAACCGCTTTCCATTGCCTAAGATTGACGACTTGTTTGACCAGCTACAAGAAGCCACTGTTTTCTCTAAGATCGATTTATGTTCAGGTTATCACCAGCTGAGCATTAGAGACAGTGACATCCCTAAAACTGCTTTACATTTCAGATACAGGCATTATGAGTTTATTGTAATGTCTTTTGGCTTGACCAATGCTTCTGCGGTATTTATCAATCTAATGAGCAGGGTATTTAAGGACATCTTGGACACTTTCGTTATAGTTTTTATTGATGACATCTTGGTTTACTCCAAGACAAAGGCTGAGCATGAGGAGCATTTGCATCGAGTTTTGGAGACTCTTCGAGCCAATAAGCTATATGCCAAAGCTTTCTAA

mRNA sequence

ATGCGACTTTGCATTGATTACAGAGAGTTGAATAAGGTAACAGTCAAGAACCGCTTTCCATTGCCTAAGATTGACGACTTGTTTGACCAGCTACAAGAAGCCACTGTTTTCTCTAAGATCGATTTATGTTCAGGTTATCACCAGCTGAGCATTAGAGACAGTGACATCCCTAAAACTGCTTTACATTTCAGATACAGGCATTATGAGTTTATTGTAATGTCTTTTGGCTTGACCAATGCTTCTGCGGTATTTATCAATCTAATGAGCAGGGTATTTAAGGACATCTTGGACACTTTCGTTATAGTTTTTATTGATGACATCTTGGTTTACTCCAAGACAAAGGCTGAGCATGAGGAGCATTTGCATCGAGTTTTGGAGACTCTTCGAGCCAATAAGCTATATGCCAAAGCTTTCTAA

Coding sequence (CDS)

ATGCGACTTTGCATTGATTACAGAGAGTTGAATAAGGTAACAGTCAAGAACCGCTTTCCATTGCCTAAGATTGACGACTTGTTTGACCAGCTACAAGAAGCCACTGTTTTCTCTAAGATCGATTTATGTTCAGGTTATCACCAGCTGAGCATTAGAGACAGTGACATCCCTAAAACTGCTTTACATTTCAGATACAGGCATTATGAGTTTATTGTAATGTCTTTTGGCTTGACCAATGCTTCTGCGGTATTTATCAATCTAATGAGCAGGGTATTTAAGGACATCTTGGACACTTTCGTTATAGTTTTTATTGATGACATCTTGGTTTACTCCAAGACAAAGGCTGAGCATGAGGAGCATTTGCATCGAGTTTTGGAGACTCTTCGAGCCAATAAGCTATATGCCAAAGCTTTCTAA

Protein sequence

MRLCIDYRELNKVTVKNRFPLPKIDDLFDQLQEATVFSKIDLCSGYHQLSIRDSDIPKTALHFRYRHYEFIVMSFGLTNASAVFINLMSRVFKDILDTFVIVFIDDILVYSKTKAEHEEHLHRVLETLRANKLYAKAF

Homology

[Close]

BLAST of Cmc06g0175851 vs. NCBI nr
Match: KAA0047082.1 (pol protein [Cucumis melo var. makuwa] >TYK05074.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 247.3 bits (630), Expect = 7.8e-62
Identity = 122/136 (89.71%), Postives = 128/136 (94.12%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRFPLPKIDDLFDQLQEATVFSKIDLCSGYHQLSIRDSDIPKTA 60
           MRLCIDYRELNKVTVKNR+PLP+IDDLFDQLQEATVFSKIDL SGYHQL IRDSDIPKT 
Sbjct: 312 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQEATVFSKIDLRSGYHQLRIRDSDIPKTT 371

Query: 61  LHFRYRHYEFIVMSFGLTNASAVFINLMSRVFKDILDTFVIVFIDDILVYSKTKAEHEEH 120
            HFRY HYEFIVMSFGLTNA AVFI+LM+RVFKD LDTFVIVFIDDIL+Y KT+AEHEEH
Sbjct: 372 FHFRYGHYEFIVMSFGLTNAPAVFIDLMNRVFKDFLDTFVIVFIDDILIYFKTEAEHEEH 431

Query: 121 LHRVLETLRANKLYAK 137
           LHRVLETLRANKLYAK
Sbjct: 432 LHRVLETLRANKLYAK 447

[Close]

BLAST of Cmc06g0175851 vs. NCBI nr
Match: KAA0064197.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK02831.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 241.1 bits (614), Expect = 5.6e-60
Identity = 119/136 (87.50%), Postives = 127/136 (93.38%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRFPLPKIDDLFDQLQEATVFSKIDLCSGYHQLSIRDSDIPKTA 60
           MR CIDYRELNKVTVKNR+PLP+IDDLFDQLQ ATVFSKIDL SGYHQL IRDSDIPKTA
Sbjct: 121 MRHCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 180

Query: 61  LHFRYRHYEFIVMSFGLTNASAVFINLMSRVFKDILDTFVIVFIDDILVYSKTKAEHEEH 120
              RYRHYEFIVMSFGLTNA AVF+NLM++VFKD LDTFVIVFIDDIL+YSKT+AEHEEH
Sbjct: 181 FRLRYRHYEFIVMSFGLTNAPAVFMNLMNKVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 240

Query: 121 LHRVLETLRANKLYAK 137
           LH+VLETLRANKLYAK
Sbjct: 241 LHQVLETLRANKLYAK 256

[Close]

BLAST of Cmc06g0175851 vs. NCBI nr
Match: TYK01306.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.8 bits (608), Expect = 2.8e-59
Identity = 118/136 (86.76%), Postives = 127/136 (93.38%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRFPLPKIDDLFDQLQEATVFSKIDLCSGYHQLSIRDSDIPKTA 60
           MRLCIDYRELNKVTVKNR+PLP+IDDLFDQLQ ATVFSKIDL SGYHQL IRDSDIPKTA
Sbjct: 601 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 660

Query: 61  LHFRYRHYEFIVMSFGLTNASAVFINLMSRVFKDILDTFVIVFIDDILVYSKTKAEHEEH 120
              RY HYEFIVMSFGLTNA AVF++LM+RVFKD LD+FVIVFIDDIL+YSKT+AEHEEH
Sbjct: 661 FRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 720

Query: 121 LHRVLETLRANKLYAK 137
           LH+VLETLRANKLYAK
Sbjct: 721 LHQVLETLRANKLYAK 736

[Close]

BLAST of Cmc06g0175851 vs. NCBI nr
Match: KAA0053289.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.8 bits (608), Expect = 2.8e-59
Identity = 118/136 (86.76%), Postives = 128/136 (94.12%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRFPLPKIDDLFDQLQEATVFSKIDLCSGYHQLSIRDSDIPKTA 60
           MRLCIDYR+LNKVT+KNR+PLP+IDDLFDQLQ ATVFSKIDL SGYHQL IRDSDIPKTA
Sbjct: 510 MRLCIDYRKLNKVTLKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 569

Query: 61  LHFRYRHYEFIVMSFGLTNASAVFINLMSRVFKDILDTFVIVFIDDILVYSKTKAEHEEH 120
             FRY HYEFIVMSFGLTNA AVF++LM+RVFKD LDTFVIVFIDDIL+YSKT+AEHEEH
Sbjct: 570 FCFRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 629

Query: 121 LHRVLETLRANKLYAK 137
           LH+VLETLRANKLYAK
Sbjct: 630 LHQVLETLRANKLYAK 645

[Close]

BLAST of Cmc06g0175851 vs. NCBI nr
Match: TYJ98213.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.4 bits (607), Expect = 3.6e-59
Identity = 117/136 (86.03%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRFPLPKIDDLFDQLQEATVFSKIDLCSGYHQLSIRDSDIPKTA 60
           MRLCIDYRELNKVTVKNR+PLP+IDDLFDQLQ ATVFSKIDL SGYHQL IRDSDIPKTA
Sbjct: 369 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQRATVFSKIDLRSGYHQLRIRDSDIPKTA 428

Query: 61  LHFRYRHYEFIVMSFGLTNASAVFINLMSRVFKDILDTFVIVFIDDILVYSKTKAEHEEH 120
              RY HYEFIVMSFGLTNA  VF++LM+RVFKD LDTFVIVFIDDIL+YSKT+AEHEEH
Sbjct: 429 FRSRYEHYEFIVMSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 488

Query: 121 LHRVLETLRANKLYAK 137
           LH+VLETLRAN+LYAK
Sbjct: 489 LHQVLETLRANRLYAK 504

[Close]

BLAST of Cmc06g0175851 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.7e-32
Identity = 69/130 (53.08%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRFPLPKIDDLFDQLQEATVFSKIDLCSGYHQLSIRDSDIPKTA 60
           +R+CIDYR L KVT+KN++P+P++DDLFD+L +AT F+K+DL SGY Q+ I   D PKT 
Sbjct: 6   LRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTT 65

Query: 61  LHFRYRHYEFIVMSFGLTNASAVFINLMSRVFKDILDTFVIVFIDDILV---YSKTKAEH 120
              RY  +EF VM FGLTNA A F NLM+ V  + LD FV+V++DD++V   YS +  EH
Sbjct: 66  CVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEH 125

Query: 121 EEHLHRVLET 128
            +HL  V E+
Sbjct: 126 IKHLRVVRES 135

[Close]

BLAST of Cmc06g0175851 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-26
Identity = 61/135 (45.19%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNRFPLPKIDDLFDQLQEATVFSKIDLCSGYHQLSIRDSDIPKTAL 61
           RLC+DYR LNK T+ + FPLP+ID+L  ++  A +F+ +DL SGYHQ+ +   D  KTA 
Sbjct: 647 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 706

Query: 62  HFRYRHYEFIVMSFGLTNASAVFINLMSRVFKDILDTFVIVFIDDILVYSKTKAEHEEHL 121
                 YE+ VM FGL NA + F   M+  F+D+   FV V++DDIL++S++  EH +HL
Sbjct: 707 VTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHL 766

Query: 122 HRVLETLRANKLYAK 137
             VLE L+   L  K
Sbjct: 767 DTVLERLKNENLIVK 779

[Close]

BLAST of Cmc06g0175851 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-26
Identity = 61/135 (45.19%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNRFPLPKIDDLFDQLQEATVFSKIDLCSGYHQLSIRDSDIPKTAL 61
           RLC+DYR LNK T+ + FPLP+ID+L  ++  A +F+ +DL SGYHQ+ +   D  KTA 
Sbjct: 673 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 732

Query: 62  HFRYRHYEFIVMSFGLTNASAVFINLMSRVFKDILDTFVIVFIDDILVYSKTKAEHEEHL 121
                 YE+ VM FGL NA + F   M+  F+D+   FV V++DDIL++S++  EH +HL
Sbjct: 733 VTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHL 792

Query: 122 HRVLETLRANKLYAK 137
             VLE L+   L  K
Sbjct: 793 DTVLERLKNENLIVK 805

[Close]

BLAST of Cmc06g0175851 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.8e-22
Identity = 49/127 (38.58%), Postives = 80/127 (62.99%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNRFPLPKIDDLFDQLQEATVFSKIDLCSGYHQLSIRDSDIPKTAL 61
           R+ IDYR+LN++TV +R P+P +D++  +L     F+ IDL  G+HQ+ +    + KTA 
Sbjct: 263 RIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAF 322

Query: 62  HFRYRHYEFIVMSFGLTNASAVFINLMSRVFKDILDTFVIVFIDDILVYSKTKAEHEEHL 121
             ++ HYE++ M FGL NA A F   M+ + + +L+   +V++DDI+V+S +  EH + L
Sbjct: 323 STKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSL 382

Query: 122 HRVLETL 129
             V E L
Sbjct: 383 GLVFEKL 389

[Close]

BLAST of Cmc06g0175851 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.8e-22
Identity = 46/127 (36.22%), Postives = 80/127 (62.99%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNRFPLPKIDDLFDQLQEATVFSKIDLCSGYHQLSIRDSDIPKTAL 61
           R+ IDYR+LN++T+ +R+P+P +D++  +L +   F+ IDL  G+HQ+ + +  I KTA 
Sbjct: 262 RVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAF 321

Query: 62  HFRYRHYEFIVMSFGLTNASAVFINLMSRVFKDILDTFVIVFIDDILVYSKTKAEHEEHL 121
             +  HYE++ M FGL NA A F   M+ + + +L+   +V++DDI+++S +  EH   +
Sbjct: 322 STKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSI 381

Query: 122 HRVLETL 129
             V   L
Sbjct: 382 QLVFTKL 388

[Close]

BLAST of Cmc06g0175851 vs. ExPASy TrEMBL
Match: A0A5A7TUE5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00480 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.8e-62
Identity = 122/136 (89.71%), Postives = 128/136 (94.12%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRFPLPKIDDLFDQLQEATVFSKIDLCSGYHQLSIRDSDIPKTA 60
           MRLCIDYRELNKVTVKNR+PLP+IDDLFDQLQEATVFSKIDL SGYHQL IRDSDIPKT 
Sbjct: 312 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQEATVFSKIDLRSGYHQLRIRDSDIPKTT 371

Query: 61  LHFRYRHYEFIVMSFGLTNASAVFINLMSRVFKDILDTFVIVFIDDILVYSKTKAEHEEH 120
            HFRY HYEFIVMSFGLTNA AVFI+LM+RVFKD LDTFVIVFIDDIL+Y KT+AEHEEH
Sbjct: 372 FHFRYGHYEFIVMSFGLTNAPAVFIDLMNRVFKDFLDTFVIVFIDDILIYFKTEAEHEEH 431

Query: 121 LHRVLETLRANKLYAK 137
           LHRVLETLRANKLYAK
Sbjct: 432 LHRVLETLRANKLYAK 447

[Close]

BLAST of Cmc06g0175851 vs. ExPASy TrEMBL
Match: A0A5A7VAZ7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00260 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.7e-60
Identity = 119/136 (87.50%), Postives = 127/136 (93.38%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRFPLPKIDDLFDQLQEATVFSKIDLCSGYHQLSIRDSDIPKTA 60
           MR CIDYRELNKVTVKNR+PLP+IDDLFDQLQ ATVFSKIDL SGYHQL IRDSDIPKTA
Sbjct: 121 MRHCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 180

Query: 61  LHFRYRHYEFIVMSFGLTNASAVFINLMSRVFKDILDTFVIVFIDDILVYSKTKAEHEEH 120
              RYRHYEFIVMSFGLTNA AVF+NLM++VFKD LDTFVIVFIDDIL+YSKT+AEHEEH
Sbjct: 181 FRLRYRHYEFIVMSFGLTNAPAVFMNLMNKVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 240

Query: 121 LHRVLETLRANKLYAK 137
           LH+VLETLRANKLYAK
Sbjct: 241 LHQVLETLRANKLYAK 256

[Close]

BLAST of Cmc06g0175851 vs. ExPASy TrEMBL
Match: A0A5A7UII7 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00990 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.3e-59
Identity = 118/136 (86.76%), Postives = 128/136 (94.12%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRFPLPKIDDLFDQLQEATVFSKIDLCSGYHQLSIRDSDIPKTA 60
           MRLCIDYR+LNKVT+KNR+PLP+IDDLFDQLQ ATVFSKIDL SGYHQL IRDSDIPKTA
Sbjct: 510 MRLCIDYRKLNKVTLKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 569

Query: 61  LHFRYRHYEFIVMSFGLTNASAVFINLMSRVFKDILDTFVIVFIDDILVYSKTKAEHEEH 120
             FRY HYEFIVMSFGLTNA AVF++LM+RVFKD LDTFVIVFIDDIL+YSKT+AEHEEH
Sbjct: 570 FCFRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 629

Query: 121 LHRVLETLRANKLYAK 137
           LH+VLETLRANKLYAK
Sbjct: 630 LHQVLETLRANKLYAK 645

[Close]

BLAST of Cmc06g0175851 vs. ExPASy TrEMBL
Match: A0A5D3BSV9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold827G00060 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.3e-59
Identity = 118/136 (86.76%), Postives = 127/136 (93.38%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRFPLPKIDDLFDQLQEATVFSKIDLCSGYHQLSIRDSDIPKTA 60
           MRLCIDYRELNKVTVKNR+PLP+IDDLFDQLQ ATVFSKIDL SGYHQL IRDSDIPKTA
Sbjct: 601 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 660

Query: 61  LHFRYRHYEFIVMSFGLTNASAVFINLMSRVFKDILDTFVIVFIDDILVYSKTKAEHEEH 120
              RY HYEFIVMSFGLTNA AVF++LM+RVFKD LD+FVIVFIDDIL+YSKT+AEHEEH
Sbjct: 661 FRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 720

Query: 121 LHRVLETLRANKLYAK 137
           LH+VLETLRANKLYAK
Sbjct: 721 LHQVLETLRANKLYAK 736

[Close]

BLAST of Cmc06g0175851 vs. ExPASy TrEMBL
Match: A0A5A7UN68 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G002110 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.8e-59
Identity = 118/136 (86.76%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRFPLPKIDDLFDQLQEATVFSKIDLCSGYHQLSIRDSDIPKTA 60
           MRLCIDYRELNKVTVKNR+PLPKIDDLFDQLQ ATVFSKIDL SGYHQL IRDSDIPKTA
Sbjct: 528 MRLCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLQSGYHQLRIRDSDIPKTA 587

Query: 61  LHFRYRHYEFIVMSFGLTNASAVFINLMSRVFKDILDTFVIVFIDDILVYSKTKAEHEEH 120
              RY HYEFIVMSFGLTNA AVF++LM+RVFKD LD+FVIVFIDDIL+YSKT+AEHEEH
Sbjct: 588 FRSRYEHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 647

Query: 121 LHRVLETLRANKLYAK 137
           LH+VLETLRANKLY K
Sbjct: 648 LHQVLETLRANKLYVK 663

The following BLAST results are available for this feature:

BLAST of Cmc06g0175851 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047082.1	7.8e-62	89.71	pol protein [Cucumis melo var. makuwa] >TYK05074.1 pol protein [Cucumis melo var...	[more]
KAA0064197.1	5.6e-60	87.50	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK02831.1 ty3-gyp...	[more]
TYK01306.1	2.8e-59	86.76	pol protein [Cucumis melo var. makuwa]	[more]
KAA0053289.1	2.8e-59	86.76	pol protein [Cucumis melo var. makuwa]	[more]
TYJ98213.1	3.6e-59	86.03	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0175851 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31843	6.7e-32	53.08	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q99315	1.4e-26	45.19	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.4e-26	45.19	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P04323	2.8e-22	38.58	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	4.8e-22	36.22	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]

BLAST of Cmc06g0175851 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TUE5	3.8e-62	89.71	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13...	[more]
A0A5A7VAZ7	2.7e-60	87.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21...	[more]
A0A5A7UII7	1.3e-59	86.76	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00990 PE...	[more]
A0A5D3BSV9	1.3e-59	86.76	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold82...	[more]
A0A5A7UN68	1.8e-59	86.76	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31...	[more]

BLAST of Cmc06g0175851 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..79 e-value: 2.5E-53 score: 182.5
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..130
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..130
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..137 e-value: 2.16696E-63 score: 189.729
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..136 e-value: 2.5E-53 score: 182.5
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..134 e-value: 2.9E-18 score: 66.2
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0175851.1	Cmc06g0175851.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding