Cmc06g0171311 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0171311
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr06: 27168275 .. 27168757 (-)
RNA-Seq Expression	Cmc06g0171311
Synteny	Cmc06g0171311

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAGCACACCCATTGAACATTCCAATAGTGGTTCGATCATTGGATATAAAAAGGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTATCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCGTTTTTAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAGACATTTGAATGGAGTTAAGCATGTACTTCGTTATATTCGAGGGACAATTGATATTGGTTTGTTTTATTCAAATAAATCAAACTTTGATTCAGTTAGTTATGCGGATGCTGGATATTTATCTGATCCACACAAAGGAATATCTCAAATAGGTTATCTGTTTACATGTGGAGGAACTGCTATATCTTGGCGATCTGTAAAGCAAACCATGACGGCTACTTCATCGAGTCATGCAGAAATTTTTGCAATTCATGAAGCTAGTTGA

mRNA sequence

ATGGAGAAAGCACACCCATTGAACATTCCAATAGTGGTTCGATCATTGGATATAAAAAGGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTATCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCGTTTTTAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAGACATTTGAATGGAGTTAAGCATGTACTTCGTTATATTCGAGGGACAATTGATATTGGTTTGTTTTATTCAAATAAATCAAACTTTGATTCAGTTAGTTATGCGGATGCTGGATATTTATCTGATCCACACAAAGGAATATCTCAAATAGGTTATCTGTTTACATGTGGAGGAACTGCTATATCTTGGCGATCTGTAAAGCAAACCATGACGGCTACTTCATCGAGTCATGCAGAAATTTTTGCAATTCATGAAGCTAGTTGA

Coding sequence (CDS)

ATGGAGAAAGCACACCCATTGAACATTCCAATAGTGGTTCGATCATTGGATATAAAAAGGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTATCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCGTTTTTAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAGACATTTGAATGGAGTTAAGCATGTACTTCGTTATATTCGAGGGACAATTGATATTGGTTTGTTTTATTCAAATAAATCAAACTTTGATTCAGTTAGTTATGCGGATGCTGGATATTTATCTGATCCACACAAAGGAATATCTCAAATAGGTTATCTGTTTACATGTGGAGGAACTGCTATATCTTGGCGATCTGTAAAGCAAACCATGACGGCTACTTCATCGAGTCATGCAGAAATTTTTGCAATTCATGAAGCTAGTTGA

Protein sequence

MEKAHPLNIPIVVRSLDIKRDIFRPREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFLVNLLARYSSSPTKRHLNGVKHVLRYIRGTIDIGLFYSNKSNFDSVSYADAGYLSDPHKGISQIGYLFTCGGTAISWRSVKQTMTATSSSHAEIFAIHEAS

Homology

[Close]

BLAST of Cmc06g0171311 vs. NCBI nr
Match: KAA0038947.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK11197.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 283.5 bits (724), Expect = 1.1e-72
Identity = 140/160 (87.50%), Postives = 148/160 (92.50%), Query Frame = 0


Query: 1   MEKAHPLNIPIVVRSLDIKRDIFRPREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFL 60
           M+KAH LNIP+VVRSLD+K+DIFRPREDNEELLGPEV YL+AIGALMYLANNTRPDI+F 
Sbjct: 1   MDKAHLLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLNAIGALMYLANNTRPDISFS 60

Query: 61  VNLLARYSSSPTKRHLNGVKHVLRYIRGTIDIGLFYSNKSNFDSVSYADAGYLSDPHKGI 120
           VNLLARYSSSPTKRH N VKHVLRY+RGTIDIGLFYSNKSNFD V YADAGYLSDP K  
Sbjct: 61  VNLLARYSSSPTKRHWNEVKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDPRKAR 120

Query: 121 SQIGYLFTCGGTAISWRSVKQTMTATSSSHAEIFAIHEAS 161
           SQ GYLFTCGGTAISWRSVKQTMTATSS+HAEI AIHEAS
Sbjct: 121 SQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEAS 160

[Close]

BLAST of Cmc06g0171311 vs. NCBI nr
Match: KAA0067250.1 (Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa])

HSP 1 Score: 281.6 bits (719), Expect = 4.3e-72
Identity = 140/160 (87.50%), Postives = 147/160 (91.88%), Query Frame = 0


Query: 1   MEKAHPLNIPIVVRSLDIKRDIFRPREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFL 60
           M+KAHPLNIP+VVRSLD+K+DIFRPREDNEELLGPEV YLSAIGALM LANNTRPDIAF 
Sbjct: 1   MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMCLANNTRPDIAFS 60

Query: 61  VNLLARYSSSPTKRHLNGVKHVLRYIRGTIDIGLFYSNKSNFDSVSYADAGYLSDPHKGI 120
           VNLLARYSSSPTKRH NGVKHVLRY+RGTID+ LFYSNKSNFD V YADAGYLSDP K  
Sbjct: 61  VNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPDKAR 120

Query: 121 SQIGYLFTCGGTAISWRSVKQTMTATSSSHAEIFAIHEAS 161
           SQIGYLFT GGTAISWRSVKQTMTATSS+HAEI AIHE S
Sbjct: 121 SQIGYLFTWGGTAISWRSVKQTMTATSSNHAEILAIHEVS 160

[Close]

BLAST of Cmc06g0171311 vs. NCBI nr
Match: TYK21506.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 265.8 bits (678), Expect = 2.5e-67
Identity = 131/150 (87.33%), Postives = 139/150 (92.67%), Query Frame = 0


Query: 11  IVVRSLDIKRDIFRPREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFLVNLLARYSSS 70
           ++VRSLD+K+DIFRPREDNEELLGPEV YLSAIGALMYLANNTRPDIAF VNLLARYS S
Sbjct: 1   MLVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSYS 60

Query: 71  PTKRHLNGVKHVLRYIRGTIDIGLFYSNKSNFDSVSYADAGYLSDPHKGISQIGYLFTCG 130
           PTKRH NGVKHVLRY+RGTID+GLFYSNKSNFD V YADAG+LSDPHK  SQ GYLFTC 
Sbjct: 61  PTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVGYADAGHLSDPHKARSQTGYLFTCE 120

Query: 131 GTAISWRSVKQTMTATSSSHAEIFAIHEAS 161
           GTAISWRSVKQTMTATSS+HAEI AIHEAS
Sbjct: 121 GTAISWRSVKQTMTATSSNHAEILAIHEAS 150

[Close]

BLAST of Cmc06g0171311 vs. NCBI nr
Match: RVW59189.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 252.3 bits (643), Expect = 2.8e-63
Identity = 122/160 (76.25%), Postives = 139/160 (86.88%), Query Frame = 0


Query: 1   MEKAHPLNIPIVVRSLDIKRDIFRPREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFL 60
           M+KAHPL+ P+VVRSLD+K+D FRP E +EELLGPEV YLSAIGALMYLAN TRPDIAF 
Sbjct: 548 MDKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFS 607

Query: 61  VNLLARYSSSPTKRHLNGVKHVLRYIRGTIDIGLFYSNKSNFDSVSYADAGYLSDPHKGI 120
           VNLLARYSS+PT+RH NG+KH+LRY+RGT D+GLFYS +S    + YADAGYLSDPHKG 
Sbjct: 608 VNLLARYSSAPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGR 667

Query: 121 SQIGYLFTCGGTAISWRSVKQTMTATSSSHAEIFAIHEAS 161
           SQ GY+F C GTAISWRSVKQTM ATSS+H+EI AIHEAS
Sbjct: 668 SQTGYVFNCNGTAISWRSVKQTMVATSSNHSEILAIHEAS 707

[Close]

BLAST of Cmc06g0171311 vs. NCBI nr
Match: RVW48830.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 252.3 bits (643), Expect = 2.8e-63
Identity = 122/160 (76.25%), Postives = 139/160 (86.88%), Query Frame = 0


Query: 1   MEKAHPLNIPIVVRSLDIKRDIFRPREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFL 60
           M+KAHPL+ P+VVRSLD+K+D FRP E +EELLGPEV YLSAIGALMYLAN TRPDIAF 
Sbjct: 1   MDKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFS 60

Query: 61  VNLLARYSSSPTKRHLNGVKHVLRYIRGTIDIGLFYSNKSNFDSVSYADAGYLSDPHKGI 120
           VNLLARYSS+PT+RH NG+KH+LRY+RGT D+GLFYS +S    + YADAGYLSDPHKG 
Sbjct: 61  VNLLARYSSAPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGR 120

Query: 121 SQIGYLFTCGGTAISWRSVKQTMTATSSSHAEIFAIHEAS 161
           SQ GY+F C GTAISWRSVKQTM ATSS+H+EI AIHEAS
Sbjct: 121 SQTGYVFNCNGTAISWRSVKQTMVATSSNHSEILAIHEAS 160

[Close]

BLAST of Cmc06g0171311 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-19
Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 0


Query: 37  VSYLSAIGALMYLANNTRPDIAFLVNLLARYSSSPTKRHLNGVKHVLRYIRGTIDIGLFY 96
           V YLSA+GA+MYL   TRPD+A  V +L++++S P   H   +K VLRY++ T   GL +
Sbjct: 4   VPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEF 63

Query: 97  SNKSNFDSVSYADAGYLSDPHKGISQIGYLFTCGGTAISWRSVKQTMTATSSSHAEIFAI 156
           +       V Y+DA +  D     S  GYLF   G  +SWRS KQ   A SS+  E  A+
Sbjct: 64  TRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMAL 123

Query: 157 HEAS 161
            EA+
Sbjct: 124 SEAT 127

[Close]

BLAST of Cmc06g0171311 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-16
Identity = 59/158 (37.34%), Postives = 80/158 (50.63%), Query Frame = 0


Query: 1    MEKAHPLNIPIVVRSLDIKRDIFRPREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFL 60
            M+ A P++ P+       K+    P    E+    +V Y SA+G+LMY    TRPDIA  
Sbjct: 1075 MKNAKPVSTPLAGHLKLSKK--MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHA 1134

Query: 61   VNLLARYSSSPTKRHLNGVKHVLRYIRGTIDIGLFYSNKSNFDSVSYADAGYLSDPHKGI 120
            V +++R+  +P K H   VK +LRY+RGT    L +   S+     Y DA    D     
Sbjct: 1135 VGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGG-SDPILKGYTDADMAGDIDNRK 1194

Query: 121  SQIGYLFTCGGTAISWRSVKQTMTATSSSHAEIFAIHE 159
            S  GYLFT  G AISW+S  Q   A S++ AE  A  E
Sbjct: 1195 SSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATE 1229

[Close]

BLAST of Cmc06g0171311 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-15
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 0


Query: 39   YLSAIGALMYLANNTRPDIAFLVNLLARYSSSPTKRHLNGVKHVLRYIRGTIDIGLFYSN 98
            Y   +G+L YLA  TRPD+++ VN L++Y   PT  H N +K VLRY+ GT D G+F   
Sbjct: 1228 YRGIVGSLQYLA-FTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 99   KSNFDSVSYADAGYLSDPHKGISQIGYLFTCGGTAISWRSVKQTMTATSSSHAEIFAIHE 158
             +     +Y+DA +  D    +S  GY+   G   ISW S KQ     SS+ AE  ++  
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1347

Query: 159  AS 161
             S
Sbjct: 1348 TS 1348

[Close]

BLAST of Cmc06g0171311 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.6e-15
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 39   YLSAIGALMYLANNTRPDIAFLVNLLARYSSSPTKRHLNGVKHVLRYIRGTIDIGLFYSN 98
            Y   +G+L YLA  TRPDI++ VN L+++   PT+ HL  +K +LRY+ GT + G+F   
Sbjct: 1245 YRGIVGSLQYLA-FTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 99   KSNFDSVSYADAGYLSDPHKGISQIGYLFTCGGTAISWRSVKQTMTATSSSHAEIFAIHE 158
             +     +Y+DA +  D    +S  GY+   G   ISW S KQ     SS+ AE  ++  
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1364

Query: 159  AS 161
             S
Sbjct: 1365 TS 1365

[Close]

BLAST of Cmc06g0171311 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 79.0 bits (193), Expect = 5.6e-14
Identity = 51/142 (35.92%), Postives = 71/142 (50.00%), Query Frame = 0


Query: 25   PREDNEELLGPE----VSYLSAIGALMYLANNTRPDIAFLVNLLARYSSSPTKRHLNGVK 84
            P + N ELL  +        S IG LMY+   TRPD+   VN+L+RYSS         +K
Sbjct: 1163 PSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLK 1222

Query: 85   HVLRYIRGTIDIGLFYSNKSNFDS--VSYADAGYLSDPHKGISQIGYLFTC-GGTAISWR 144
             VLRY++GTID+ L +     F++  + Y D+ +        S  GYLF       I W 
Sbjct: 1223 RVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWN 1282

Query: 145  SVKQTMTATSSSHAEIFAIHEA 160
            + +Q   A SS+ AE  A+ EA
Sbjct: 1283 TKRQNSVAASSTEAEYMALFEA 1304

[Close]

BLAST of Cmc06g0171311 vs. ExPASy TrEMBL
Match: A0A5D3CGU0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00370 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.5e-73
Identity = 140/160 (87.50%), Postives = 148/160 (92.50%), Query Frame = 0


Query: 1   MEKAHPLNIPIVVRSLDIKRDIFRPREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFL 60
           M+KAH LNIP+VVRSLD+K+DIFRPREDNEELLGPEV YL+AIGALMYLANNTRPDI+F 
Sbjct: 1   MDKAHLLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLNAIGALMYLANNTRPDISFS 60

Query: 61  VNLLARYSSSPTKRHLNGVKHVLRYIRGTIDIGLFYSNKSNFDSVSYADAGYLSDPHKGI 120
           VNLLARYSSSPTKRH N VKHVLRY+RGTIDIGLFYSNKSNFD V YADAGYLSDP K  
Sbjct: 61  VNLLARYSSSPTKRHWNEVKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDPRKAR 120

Query: 121 SQIGYLFTCGGTAISWRSVKQTMTATSSSHAEIFAIHEAS 161
           SQ GYLFTCGGTAISWRSVKQTMTATSS+HAEI AIHEAS
Sbjct: 121 SQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEAS 160

[Close]

BLAST of Cmc06g0171311 vs. ExPASy TrEMBL
Match: A0A5D3CKU4 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.1e-72
Identity = 140/160 (87.50%), Postives = 147/160 (91.88%), Query Frame = 0


Query: 1   MEKAHPLNIPIVVRSLDIKRDIFRPREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFL 60
           M+KAHPLNIP+VVRSLD+K+DIFRPREDNEELLGPEV YLSAIGALM LANNTRPDIAF 
Sbjct: 1   MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMCLANNTRPDIAFS 60

Query: 61  VNLLARYSSSPTKRHLNGVKHVLRYIRGTIDIGLFYSNKSNFDSVSYADAGYLSDPHKGI 120
           VNLLARYSSSPTKRH NGVKHVLRY+RGTID+ LFYSNKSNFD V YADAGYLSDP K  
Sbjct: 61  VNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPDKAR 120

Query: 121 SQIGYLFTCGGTAISWRSVKQTMTATSSSHAEIFAIHEAS 161
           SQIGYLFT GGTAISWRSVKQTMTATSS+HAEI AIHE S
Sbjct: 121 SQIGYLFTWGGTAISWRSVKQTMTATSSNHAEILAIHEVS 160

[Close]

BLAST of Cmc06g0171311 vs. ExPASy TrEMBL
Match: A0A5D3DD63 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold518G00010 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.2e-67
Identity = 131/150 (87.33%), Postives = 139/150 (92.67%), Query Frame = 0


Query: 11  IVVRSLDIKRDIFRPREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFLVNLLARYSSS 70
           ++VRSLD+K+DIFRPREDNEELLGPEV YLSAIGALMYLANNTRPDIAF VNLLARYS S
Sbjct: 1   MLVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSYS 60

Query: 71  PTKRHLNGVKHVLRYIRGTIDIGLFYSNKSNFDSVSYADAGYLSDPHKGISQIGYLFTCG 130
           PTKRH NGVKHVLRY+RGTID+GLFYSNKSNFD V YADAG+LSDPHK  SQ GYLFTC 
Sbjct: 61  PTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVGYADAGHLSDPHKARSQTGYLFTCE 120

Query: 131 GTAISWRSVKQTMTATSSSHAEIFAIHEAS 161
           GTAISWRSVKQTMTATSS+HAEI AIHEAS
Sbjct: 121 GTAISWRSVKQTMTATSSNHAEILAIHEAS 150

[Close]

BLAST of Cmc06g0171311 vs. ExPASy TrEMBL
Match: A0A2N9IP87 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54544 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.2e-65
Identity = 127/160 (79.38%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 1   MEKAHPLNIPIVVRSLDIKRDIFRPREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFL 60
           M+KAHPL+IP+VVRSLD+K+D FRP++  EE LGPEV YLSAIGALMYLAN T+PDIAF 
Sbjct: 77  MDKAHPLSIPMVVRSLDVKKDPFRPQKVGEETLGPEVPYLSAIGALMYLANCTQPDIAFS 136

Query: 61  VNLLARYSSSPTKRHLNGVKHVLRYIRGTIDIGLFYSNKSNFDSVSYADAGYLSDPHKGI 120
           VNLLARYSS+PT RH NGVKHVLRY+RGT D+GLFY NKSN   V YADAGYLSDPHKG 
Sbjct: 137 VNLLARYSSAPTLRHWNGVKHVLRYLRGTTDMGLFYPNKSNPQLVGYADAGYLSDPHKGR 196

Query: 121 SQIGYLFTCGGTAISWRSVKQTMTATSSSHAEIFAIHEAS 161
           SQIGYLFTCG TAISWRSVKQT++ATSS+H+EI AIHEAS
Sbjct: 197 SQIGYLFTCGDTAISWRSVKQTISATSSNHSEIIAIHEAS 236

[Close]

BLAST of Cmc06g0171311 vs. ExPASy TrEMBL
Match: A0A2N9J4G7 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59221 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.2e-65
Identity = 127/160 (79.38%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 1   MEKAHPLNIPIVVRSLDIKRDIFRPREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFL 60
           M+KAHPL+ P+VVRSLD+K+D FRP+E  EE LGPEV YLSAIGALMYLAN TRPDIAF 
Sbjct: 520 MDKAHPLSTPMVVRSLDVKKDPFRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFS 579

Query: 61  VNLLARYSSSPTKRHLNGVKHVLRYIRGTIDIGLFYSNKSNFDSVSYADAGYLSDPHKGI 120
           VNLLARYSS+PT RH NGVKHVLRY+RGT D+GLFY NKSN   V YADAGYLSDPHKG 
Sbjct: 580 VNLLARYSSAPTLRHWNGVKHVLRYLRGTTDMGLFYPNKSNPQLVGYADAGYLSDPHKGR 639

Query: 121 SQIGYLFTCGGTAISWRSVKQTMTATSSSHAEIFAIHEAS 161
           SQ GYLFTCG TAISWRSVKQT++ATSS+H+EI AIHEAS
Sbjct: 640 SQTGYLFTCGNTAISWRSVKQTISATSSNHSEIIAIHEAS 679

[Close]

BLAST of Cmc06g0171311 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 81.6 bits (200), Expect = 6.1e-16
Identity = 48/123 (39.02%), Postives = 70/123 (56.91%), Query Frame = 0


Query: 38  SYLSAIGALMYLANNTRPDIAFLVNLLARYSSSPTKRHLNGVKHVLRYIRGTIDIGLFYS 97
           +Y   IG LMYL   TR DI+F VN L+++S +P   H   V  +L YI+GT+  GLFYS
Sbjct: 377 AYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYS 436

Query: 98  NKSNFDSVSYADAGYLSDPHKGISQIGYLFTCGGTAISWRSVKQTMTATSSSHAEIFAIH 157
           +++      ++DA + S      S  GY    G + ISW+S KQ + + SS+ AE  A+ 
Sbjct: 437 SQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALS 496

Query: 158 EAS 161
            A+
Sbjct: 497 FAT 498

[Close]

BLAST of Cmc06g0171311 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 5.9e-11
Identity = 38/118 (32.20%), Postives = 61/118 (51.69%), Query Frame = 0


Query: 39  YLSAIGALMYLANNTRPDIAFLVNLLARYSSSPTKRHLNGVKHVLRYIRGTIDIGLFYSN 98
           + S +GAL YL   TRPDI++ VN++ +    PT    + +K VLRY++GTI  GL+   
Sbjct: 100 FRSIVGALQYL-TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 159

Query: 99  KSNFDSVSYADAGYLSDPHKGISQIGYLFTCGGTAISWRSVKQTMTATSSSHAEIFAI 157
            S  +  ++ D+ +        S  G+    G   ISW + +Q   + SS+  E  A+
Sbjct: 160 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRAL 216

[Close]

BLAST of Cmc06g0171311 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 57.8 bits (138), Expect = 9.5e-09
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 47  MYLANNTRPDIAFLVNLLARYSSSPTKRHLNGVKHVLRYIRGTIDIGLFYSNKSNFDSVS 106
           MYL   TRPD+ F VN L+++SS+     +  V  VL Y++GT+  GLFYS  S+    +
Sbjct: 1   MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 107 YADAGYLSDPHKGISQIGY 126
           +AD+ + S P    S  G+
Sbjct: 61  FADSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of Cmc06g0171311 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038947.1	1.1e-72	87.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0067250.1	4.3e-72	87.50	Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa]	[more]
TYK21506.1	2.5e-67	87.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
RVW59189.1	2.8e-63	76.25	Copia protein [Vitis vinifera]	[more]
RVW48830.1	2.8e-63	76.25	Copia protein [Vitis vinifera]	[more]

BLAST of Cmc06g0171311 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CV72	1.5e-19	41.94	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P10978	2.7e-16	37.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	2.3e-15	38.52	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	6.6e-15	36.89	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	5.6e-14	35.92	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc06g0171311 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CGU0	5.5e-73	87.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CKU4	2.1e-72	87.50	Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1	[more]
A0A5D3DD63	1.2e-67	87.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A2N9IP87	3.2e-65	79.38	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54544 PE=4 SV=1	[more]
A0A2N9J4G7	4.2e-65	79.38	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]

BLAST of Cmc06g0171311 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	6.1e-16	39.02	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	5.9e-11	32.20	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	9.5e-09	39.24	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 32..128
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 32..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0171311.1	Cmc06g0171311.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding