Cmc06g0167461 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0167461
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	CMiso1.1chr06: 20635173 .. 20635745 (+)
RNA-Seq Expression	Cmc06g0167461
Synteny	Cmc06g0167461

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAATAGAATTAATGTAGCTGTGGATGACATTTTTGCGTATAATGTTGCACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTGTTGACAAATGTCGTAATAGAAAGGATTGGCCCAAATGGAAAGAAGCCATCCAAGCAGAACTAAACTCACTCACGAAACGTGAAGTTTTTGGACCTGTAGTTTATACACCTAAAGGTGTAAAACCTGTGGGATTTAAATGGGTATTTGTACATAAACGAAATGAAAATAATGAGGTCACTAGATATAAAGCACGACTTGTTGCACAAGGATTTTCTCAAAGACCAGGCATTGGTTATGAGGAAACATATTCTCCTGTGGTGGATGCTATTACATTAAGATATTTAATTAGTCTGGCTGTATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACAGCATACTTATATGGATCTTTGGAAAATGAAATCTATAGGAAAATCCCTGAAGAATTTAAGATACTTGAATCATATAATTCAAACTCTAGAGAATTATGTTCAATCAAATTACAAAGATCATTATATGGATTGAAATAA

mRNA sequence

ATGTGGAATAGAATTAATGTAGCTGTGGATGACATTTTTGCGTATAATGTTGCACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTGTTGACAAATGTCGTAATAGAAAGGATTGGCCCAAATGGAAAGAAGCCATCCAAGCAGAACTAAACTCACTCACGAAACGTGAAGTTTTTGGACCTGTAGTTTATACACCTAAAGGTGTAAAACCTGTGGGATTTAAATGGGTATTTGTACATAAACGAAATGAAAATAATGAGGTCACTAGATATAAAGCACGACTTGTTGCACAAGGATTTTCTCAAAGACCAGGCATTGGTTATGAGGAAACATATTCTCCTGTGGTGGATGCTATTACATTAAGATATTTAATTAGTCTGGCTGTATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACAGCATACTTATATGGATCTTTGGAAAATGAAATCTATAGGAAAATCCCTGAAGAATTTAAGATACTTGAATCATATAATTCAAACTCTAGAGAATTATGTTCAATCAAATTACAAAGATCATTATATGGATTGAAATAA

Coding sequence (CDS)

ATGTGGAATAGAATTAATGTAGCTGTGGATGACATTTTTGCGTATAATGTTGCACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTGTTGACAAATGTCGTAATAGAAAGGATTGGCCCAAATGGAAAGAAGCCATCCAAGCAGAACTAAACTCACTCACGAAACGTGAAGTTTTTGGACCTGTAGTTTATACACCTAAAGGTGTAAAACCTGTGGGATTTAAATGGGTATTTGTACATAAACGAAATGAAAATAATGAGGTCACTAGATATAAAGCACGACTTGTTGCACAAGGATTTTCTCAAAGACCAGGCATTGGTTATGAGGAAACATATTCTCCTGTGGTGGATGCTATTACATTAAGATATTTAATTAGTCTGGCTGTATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACAGCATACTTATATGGATCTTTGGAAAATGAAATCTATAGGAAAATCCCTGAAGAATTTAAGATACTTGAATCATATAATTCAAACTCTAGAGAATTATGTTCAATCAAATTACAAAGATCATTATATGGATTGAAATAA

Protein sequence

MWNRINVAVDDIFAYNVAHNIIHENEDYEPKSVDKCRNRKDWPKWKEAIQAELNSLTKREVFGPVVYTPKGVKPVGFKWVFVHKRNENNEVTRYKARLVAQGFSQRPGIGYEETYSPVVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYRKIPEEFKILESYNSNSRELCSIKLQRSLYGLK

Homology

[Close]

BLAST of Cmc06g0167461 vs. NCBI nr
Match: RVW26456.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 290.0 bits (741), Expect = 1.4e-74
Identity = 137/189 (72.49%), Postives = 164/189 (86.77%), Query Frame = 0


Query: 2   WNRINVAVDDIFAYNVAHNIIHENEDYEPKSVDKCRNRKDWPKWKEAIQAELNSLTKREV 61
           W+R N+ +++IFA+ VA +II  +ED EP++V++CR+R DWPKWKEAIQAELNSLTKREV
Sbjct: 329 WDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLTKREV 388

Query: 62  FGPVVYTPKGVKPVGFKWVFVHKRNENNEVTRYKARLVAQGFSQRPGIGYEETYSPVVDA 121
           FGPVV TP+ VKPVG+KWVFV KRNENNE+ RYKARLVAQGFSQRPGI YEETYSPV+DA
Sbjct: 389 FGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDA 448

Query: 122 ITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYRKIPEEFKILESYNSNSRELCSIK 181
           IT R+LISLAV E LDM LMDV+TAYLYGS++N+IY KIPE FK+ ++ N+  R + SIK
Sbjct: 449 ITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIK 508

Query: 182 LQRSLYGLK 191
           LQRSLYGLK
Sbjct: 509 LQRSLYGLK 517

[Close]

BLAST of Cmc06g0167461 vs. NCBI nr
Match: RVX16158.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 290.0 bits (741), Expect = 1.4e-74
Identity = 137/189 (72.49%), Postives = 164/189 (86.77%), Query Frame = 0


Query: 2   WNRINVAVDDIFAYNVAHNIIHENEDYEPKSVDKCRNRKDWPKWKEAIQAELNSLTKREV 61
           W+R N+ +++IFA+ VA +II  +ED EP++V++CR+R DWPKWKEAIQAELNSLTKREV
Sbjct: 522 WDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLTKREV 581

Query: 62  FGPVVYTPKGVKPVGFKWVFVHKRNENNEVTRYKARLVAQGFSQRPGIGYEETYSPVVDA 121
           FGPVV TP+ VKPVG+KWVFV KRNENNE+ RYKARLVAQGFSQRPGI YEETYSPV+DA
Sbjct: 582 FGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDA 641

Query: 122 ITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYRKIPEEFKILESYNSNSRELCSIK 181
           IT R+LISLAV E LDM LMDV+TAYLYGS++N+IY KIPE FK+ ++ N+  R + SIK
Sbjct: 642 ITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIK 701

Query: 182 LQRSLYGLK 191
           LQRSLYGLK
Sbjct: 702 LQRSLYGLK 710

[Close]

BLAST of Cmc06g0167461 vs. NCBI nr
Match: RVW89885.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 290.0 bits (741), Expect = 1.4e-74
Identity = 137/189 (72.49%), Postives = 164/189 (86.77%), Query Frame = 0


Query: 2   WNRINVAVDDIFAYNVAHNIIHENEDYEPKSVDKCRNRKDWPKWKEAIQAELNSLTKREV 61
           W+R N+ +++IFA+ VA +II  +ED EP++V++CR+R DWPKWKEAIQAELNSLTKREV
Sbjct: 603 WDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLTKREV 662

Query: 62  FGPVVYTPKGVKPVGFKWVFVHKRNENNEVTRYKARLVAQGFSQRPGIGYEETYSPVVDA 121
           FGPVV TP+ VKPVG+KWVFV KRNENNE+ RYKARLVAQGFSQRPGI YEETYSPV+DA
Sbjct: 663 FGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDA 722

Query: 122 ITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYRKIPEEFKILESYNSNSRELCSIK 181
           IT R+LISLAV E LDM LMDV+TAYLYGS++N+IY KIPE FK+ ++ N+  R + SIK
Sbjct: 723 ITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIK 782

Query: 182 LQRSLYGLK 191
           LQRSLYGLK
Sbjct: 783 LQRSLYGLK 791

[Close]

BLAST of Cmc06g0167461 vs. NCBI nr
Match: RVW59049.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 290.0 bits (741), Expect = 1.4e-74
Identity = 137/189 (72.49%), Postives = 164/189 (86.77%), Query Frame = 0


Query: 2   WNRINVAVDDIFAYNVAHNIIHENEDYEPKSVDKCRNRKDWPKWKEAIQAELNSLTKREV 61
           W+R N+ +++IFA+ VA +II  +ED EP++V++CR+R DWPKWKEAIQAELNSLTKREV
Sbjct: 509 WDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLTKREV 568

Query: 62  FGPVVYTPKGVKPVGFKWVFVHKRNENNEVTRYKARLVAQGFSQRPGIGYEETYSPVVDA 121
           FGPVV TP+ VKPVG+KWVFV KRNENNE+ RYKARLVAQGFSQRPGI YEETYSPV+DA
Sbjct: 569 FGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDA 628

Query: 122 ITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYRKIPEEFKILESYNSNSRELCSIK 181
           IT R+LISLAV E LDM LMDV+TAYLYGS++N+IY KIPE FK+ ++ N+  R + SIK
Sbjct: 629 ITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIK 688

Query: 182 LQRSLYGLK 191
           LQRSLYGLK
Sbjct: 689 LQRSLYGLK 697

[Close]

BLAST of Cmc06g0167461 vs. NCBI nr
Match: RVW50867.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 290.0 bits (741), Expect = 1.4e-74
Identity = 137/189 (72.49%), Postives = 164/189 (86.77%), Query Frame = 0


Query: 2   WNRINVAVDDIFAYNVAHNIIHENEDYEPKSVDKCRNRKDWPKWKEAIQAELNSLTKREV 61
           W+R N+ +++IFA+ VA +II  +ED EP++V++CR+R DWPKWKEAIQAELNSLTKREV
Sbjct: 522 WDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLTKREV 581

Query: 62  FGPVVYTPKGVKPVGFKWVFVHKRNENNEVTRYKARLVAQGFSQRPGIGYEETYSPVVDA 121
           FGPVV TP+ VKPVG+KWVFV KRNENNE+ RYKARLVAQGFSQRPGI YEETYSPV+DA
Sbjct: 582 FGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDA 641

Query: 122 ITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYRKIPEEFKILESYNSNSRELCSIK 181
           IT R+LISLAV E LDM LMDV+TAYLYGS++N+IY KIPE FK+ ++ N+  R + SIK
Sbjct: 642 ITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIK 701

Query: 182 LQRSLYGLK 191
           LQRSLYGLK
Sbjct: 702 LQRSLYGLK 710

[Close]

BLAST of Cmc06g0167461 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-25
Identity = 65/166 (39.16%), Postives = 105/166 (63.25%), Query Frame = 0


Query: 25  NEDYEPKSVDKCRNRKDWPKWKEAIQAELNSLTKREVFGPVVYTPKGVKPVGFKWVFVHK 84
           ++D EP+S+ +  +  +  +  +A+Q E+ SL K   +  +V  PKG +P+  KWVF  K
Sbjct: 806 SDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTY-KLVELPKGKRPLKCKWVFKLK 865

Query: 85  RNENNEVTRYKARLVAQGFSQRPGIGYEETYSPVVDAITLRYLISLAVCENLDMHLMDVV 144
           ++ + ++ RYKARLV +GF Q+ GI ++E +SPVV   ++R ++SLA   +L++  +DV 
Sbjct: 866 KDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVK 925

Query: 145 TAYLYGSLENEIYRKIPEEFKILESYNSNSRELCSIKLQRSLYGLK 191
           TA+L+G LE EIY + PE F++          +C  KL +SLYGLK
Sbjct: 926 TAFLHGDLEEEIYMEQPEGFEVA----GKKHMVC--KLNKSLYGLK 964

[Close]

BLAST of Cmc06g0167461 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 115.9 bits (289), Expect = 4.9e-25
Identity = 68/173 (39.31%), Postives = 100/173 (57.80%), Query Frame = 0


Query: 18   AHNIIHENEDYEPKSVDKCRNRKDWPKWKEAIQAELNSLTKREVFGPVVYTPKGVKPVGF 77
            AH I ++     P S D+ + R D   W+EAI  ELN+      +  +   P+    V  
Sbjct: 883  AHTIFND----VPNSFDEIQYRDDKSSWEEAINTELNAHKINNTW-TITKRPENKNIVDS 942

Query: 78   KWVFVHKRNENNEVTRYKARLVAQGFSQRPGIGYEETYSPVVDAITLRYLISLAVCENLD 137
            +WVF  K NE     RYKARLVA+GF+Q+  I YEET++PV    + R+++SL +  NL 
Sbjct: 943  RWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLK 1002

Query: 138  MHLMDVVTAYLYGSLENEIYRKIPEEFKILESYNSNSRELCSIKLQRSLYGLK 191
            +H MDV TA+L G+L+ EIY ++P      +  + NS  +C  KL +++YGLK
Sbjct: 1003 VHQMDVKTAFLNGTLKEEIYMRLP------QGISCNSDNVC--KLNKAIYGLK 1042

[Close]

BLAST of Cmc06g0167461 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.3e-21
Identity = 52/147 (35.37%), Postives = 86/147 (58.50%), Query Frame = 0


Query: 44   KWKEAIQAELNSLTKREVFGPVVYTPKGVKPVGFKWVFVHKRNENNEVTRYKARLVAQGF 103
            +W+ A+ +E+N+      +  V   P  V  VG +W+F  K N +  + RYKARLVA+G+
Sbjct: 967  RWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGY 1026

Query: 104  SQRPGIGYEETYSPVVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYRKIPEE 163
            +QRPG+ Y ET+SPV+ + ++R ++ +AV  +  +  +DV  A+L G+L +++Y   P  
Sbjct: 1027 NQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPG 1086

Query: 164  FKILESYNSNSRELCSIKLQRSLYGLK 191
            F          R     KL+++LYGLK
Sbjct: 1087 F------IDKDRPNYVCKLRKALYGLK 1107

[Close]

BLAST of Cmc06g0167461 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.3e-21
Identity = 51/147 (34.69%), Postives = 87/147 (59.18%), Query Frame = 0


Query: 44   KWKEAIQAELNSLTKREVFGPVVYTPKGVKPVGFKWVFVHKRNENNEVTRYKARLVAQGF 103
            +W++A+ +E+N+      +  V   P  V  VG +W+F  K N +  + RYKARLVA+G+
Sbjct: 950  RWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGY 1009

Query: 104  SQRPGIGYEETYSPVVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYRKIPEE 163
            +QRPG+ Y ET+SPV+ + ++R ++ +AV  +  +  +DV  A+L G+L +E+Y   P  
Sbjct: 1010 NQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPG 1069

Query: 164  FKILESYNSNSRELCSIKLQRSLYGLK 191
            F          R     +L++++YGLK
Sbjct: 1070 FV------DKDRPDYVCRLRKAIYGLK 1090

[Close]

BLAST of Cmc06g0167461 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-11
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 29  EPKSVDKCRNRKDWPKWKEAIQAELNSLTKREVFGPVVYTPKGVKPVGFKWVFVHKRNEN 88
           EPKSV      KD P W +A+Q EL++L++ + +  +V  P     +G KWVF  K + +
Sbjct: 27  EPKSV--IFALKD-PGWCQAMQEELDALSRNKTW-ILVPPPVNQNILGCKWVFKTKLHSD 86

Query: 89  NEVTRYKARLVAQGFSQRPGIGYEETYSPVVDAITLRYLISLA 132
             + R KARLVA+GF Q  GI + ETYSPVV   T+R ++++A
Sbjct: 87  GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc06g0167461 vs. ExPASy TrEMBL
Match: A0A438HZK0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_792 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 7.0e-75
Identity = 137/189 (72.49%), Postives = 164/189 (86.77%), Query Frame = 0


Query: 2   WNRINVAVDDIFAYNVAHNIIHENEDYEPKSVDKCRNRKDWPKWKEAIQAELNSLTKREV 61
           W+R N+ +++IFA+ VA +II  +ED EP++V++CR+R DWPKWKEAIQAELNSLTKREV
Sbjct: 603 WDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLTKREV 662

Query: 62  FGPVVYTPKGVKPVGFKWVFVHKRNENNEVTRYKARLVAQGFSQRPGIGYEETYSPVVDA 121
           FGPVV TP+ VKPVG+KWVFV KRNENNE+ RYKARLVAQGFSQRPGI YEETYSPV+DA
Sbjct: 663 FGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDA 722

Query: 122 ITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYRKIPEEFKILESYNSNSRELCSIK 181
           IT R+LISLAV E LDM LMDV+TAYLYGS++N+IY KIPE FK+ ++ N+  R + SIK
Sbjct: 723 ITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIK 782

Query: 182 LQRSLYGLK 191
           LQRSLYGLK
Sbjct: 783 LQRSLYGLK 791

[Close]

BLAST of Cmc06g0167461 vs. ExPASy TrEMBL
Match: A0A438K4P3 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_114 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 7.0e-75
Identity = 137/189 (72.49%), Postives = 164/189 (86.77%), Query Frame = 0


Query: 2   WNRINVAVDDIFAYNVAHNIIHENEDYEPKSVDKCRNRKDWPKWKEAIQAELNSLTKREV 61
           W+R N+ +++IFA+ VA +II  +ED EP++V++CR+R DWPKWKEAIQAELNSLTKREV
Sbjct: 522 WDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLTKREV 581

Query: 62  FGPVVYTPKGVKPVGFKWVFVHKRNENNEVTRYKARLVAQGFSQRPGIGYEETYSPVVDA 121
           FGPVV TP+ VKPVG+KWVFV KRNENNE+ RYKARLVAQGFSQRPGI YEETYSPV+DA
Sbjct: 582 FGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDA 641

Query: 122 ITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYRKIPEEFKILESYNSNSRELCSIK 181
           IT R+LISLAV E LDM LMDV+TAYLYGS++N+IY KIPE FK+ ++ N+  R + SIK
Sbjct: 642 ITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIK 701

Query: 182 LQRSLYGLK 191
           LQRSLYGLK
Sbjct: 702 LQRSLYGLK 710

[Close]

BLAST of Cmc06g0167461 vs. ExPASy TrEMBL
Match: A0A438ET65 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_127 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 7.0e-75
Identity = 137/189 (72.49%), Postives = 164/189 (86.77%), Query Frame = 0


Query: 2   WNRINVAVDDIFAYNVAHNIIHENEDYEPKSVDKCRNRKDWPKWKEAIQAELNSLTKREV 61
           W+R N+ +++IFA+ VA +II  +ED EP++V++CR+R DWPKWKEAIQAELNSLTKREV
Sbjct: 522 WDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLTKREV 581

Query: 62  FGPVVYTPKGVKPVGFKWVFVHKRNENNEVTRYKARLVAQGFSQRPGIGYEETYSPVVDA 121
           FGPVV TP+ VKPVG+KWVFV KRNENNE+ RYKARLVAQGFSQRPGI YEETYSPV+DA
Sbjct: 582 FGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDA 641

Query: 122 ITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYRKIPEEFKILESYNSNSRELCSIK 181
           IT R+LISLAV E LDM LMDV+TAYLYGS++N+IY KIPE FK+ ++ N+  R + SIK
Sbjct: 642 ITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIK 701

Query: 182 LQRSLYGLK 191
           LQRSLYGLK
Sbjct: 702 LQRSLYGLK 710

[Close]

BLAST of Cmc06g0167461 vs. ExPASy TrEMBL
Match: A0A438CTC8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1564 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 7.0e-75
Identity = 137/189 (72.49%), Postives = 164/189 (86.77%), Query Frame = 0


Query: 2   WNRINVAVDDIFAYNVAHNIIHENEDYEPKSVDKCRNRKDWPKWKEAIQAELNSLTKREV 61
           W+R N+ +++IFA+ VA +II  +ED EP++V++CR+R DWPKWKEAIQAELNSLTKREV
Sbjct: 329 WDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLTKREV 388

Query: 62  FGPVVYTPKGVKPVGFKWVFVHKRNENNEVTRYKARLVAQGFSQRPGIGYEETYSPVVDA 121
           FGPVV TP+ VKPVG+KWVFV KRNENNE+ RYKARLVAQGFSQRPGI YEETYSPV+DA
Sbjct: 389 FGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDA 448

Query: 122 ITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYRKIPEEFKILESYNSNSRELCSIK 181
           IT R+LISLAV E LDM LMDV+TAYLYGS++N+IY KIPE FK+ ++ N+  R + SIK
Sbjct: 449 ITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIK 508

Query: 182 LQRSLYGLK 191
           LQRSLYGLK
Sbjct: 509 LQRSLYGLK 517

[Close]

BLAST of Cmc06g0167461 vs. ExPASy TrEMBL
Match: A0A438ETU3 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_69 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 7.0e-75
Identity = 137/189 (72.49%), Postives = 164/189 (86.77%), Query Frame = 0


Query: 2   WNRINVAVDDIFAYNVAHNIIHENEDYEPKSVDKCRNRKDWPKWKEAIQAELNSLTKREV 61
           W+R N+ +++IFA+ VA +II  +ED EP++V++CR+R DWPKWKEAIQAELNSLTKREV
Sbjct: 512 WDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLTKREV 571

Query: 62  FGPVVYTPKGVKPVGFKWVFVHKRNENNEVTRYKARLVAQGFSQRPGIGYEETYSPVVDA 121
           FGPVV TP+ VKPVG+KWVFV KRNENNE+ RYKARLVAQGFSQRPGI YEETYSPV+DA
Sbjct: 572 FGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDA 631

Query: 122 ITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYRKIPEEFKILESYNSNSRELCSIK 181
           IT R+LISLAV E LDM LMDV+TAYLYGS++N+IY KIPE FK+ ++ N+  R + SIK
Sbjct: 632 ITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIK 691

Query: 182 LQRSLYGLK 191
           LQRSLYGLK
Sbjct: 692 LQRSLYGLK 700

[Close]

BLAST of Cmc06g0167461 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 99.8 bits (247), Expect = 2.6e-21
Identity = 49/151 (32.45%), Postives = 88/151 (58.28%), Query Frame = 0


Query: 40  KDWPKWKEAIQAELNSLTKREVFGPVVYTPKGVKPVGFKWVFVHKRNENNEVTRYKARLV 99
           K++  W  A+  E+ ++     +  +   P   KP+G KWV+  K N +  + RYKARLV
Sbjct: 93  KEFLVWCGAMDDEIGAMETTHTW-EICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLV 152

Query: 100 AQGFSQRPGIGYEETYSPVVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYRK 159
           A+G++Q+ GI + ET+SPV    +++ +++++   N  +H +D+  A+L G L+ EIY K
Sbjct: 153 AKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMK 212

Query: 160 IPEEFKILESYNSNSRELCSIKLQRSLYGLK 191
           +P  +   +  +     +C +K  +S+YGLK
Sbjct: 213 LPPGYAARQGDSLPPNAVCYLK--KSIYGLK 240

[Close]

BLAST of Cmc06g0167461 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 71.2 bits (173), Expect = 9.8e-13
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 29  EPKSVDKCRNRKDWPKWKEAIQAELNSLTKREVFGPVVYTPKGVKPVGFKWVFVHKRNEN 88
           EPKSV      KD P W +A+Q EL++L++ + +  +V  P     +G KWVF  K + +
Sbjct: 27  EPKSV--IFALKD-PGWCQAMQEELDALSRNKTW-ILVPPPVNQNILGCKWVFKTKLHSD 86

Query: 89  NEVTRYKARLVAQGFSQRPGIGYEETYSPVVDAITLRYLISLA 132
             + R KARLVA+GF Q  GI + ETYSPVV   T+R ++++A
Sbjct: 87  GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc06g0167461 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW26456.1	1.4e-74	72.49	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVX16158.1	1.4e-74	72.49	Copia protein [Vitis vinifera]	[more]
RVW89885.1	1.4e-74	72.49	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW59049.1	1.4e-74	72.49	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW50867.1	1.4e-74	72.49	Copia protein [Vitis vinifera]	[more]

BLAST of Cmc06g0167461 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.3e-25	39.16	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.9e-25	39.31	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	4.3e-21	35.37	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.3e-21	34.69	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92520	1.4e-11	42.72	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc06g0167461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438HZK0	7.0e-75	72.49	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438K4P3	7.0e-75	72.49	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_114 PE=4 SV=1	[more]
A0A438ET65	7.0e-75	72.49	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_127 PE=4 SV=1	[more]
A0A438CTC8	7.0e-75	72.49	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438ETU3	7.0e-75	72.49	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_69 PE=4 SV=1	[more]

BLAST of Cmc06g0167461 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.6e-21	32.45	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	9.8e-13	42.72	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 65..190 e-value: 9.1E-33 score: 113.9
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 18..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0167461.1	Cmc06g0167461.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding