Cmc06g0160461 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0160461
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr06: 8785241 .. 8786164 (+)
RNA-Seq Expression	Cmc06g0160461
Synteny	Cmc06g0160461

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATATCTTGGTAAGACAAAATTTTGCCTTGGCTTACAAATCGAGCATTTAGCCGATGGAATTTTTATTCATCAATCGACATATACAGAAAAAAATTTAAAAAGATTCTACATGGACAAAGCACACCCATTGAAAATTTCAATGGTGGTTCGATCATTAGATGTAAAAAATGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTATCGTACCTTAGTGCAATAGGTGCACCAATGTATCTTGCTAATAACACAAGACCAAATATAACATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAAAAAAAAGACATTGGAATGAAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGAGTTTGTTTTATTCAAATAAATCAAACTTTGATTTAGTTGGTTATGCAGATGTTGGATATTTATCTGATCCACACAAAACAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGTTATATCTTGGCGGTCTGTAAAGCAAACCATGGCGGCCACTTCATCGAATCATGTAGAAATTCTTGCAATTCATGAAACTAGTAGAGAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAATAAAAATTTACCAACAATATTATTTGAAGATAATATCACATGTATAGCACAAATCAAAGGAGGGTATATAAAAGGAGATAGAACAAAGCATATCTCACCAAAACTCTTCTATACGCATGACCTTGAAGAAAATGGTGACATTAGTGTTCAACAAATTTCTTCAAAAGACAACTTGACAGACTTATTCACAAAAGCATTACCCACATCAACATTTGAAAAGCTAGTGCACAACATTGGAATGCGACGACTCAGAGAACTTAAGTGA

mRNA sequence

ATGAAATATCTTGGTAAGACAAAATTTTGCCTTGGCTTACAAATCGAGCATTTAGCCGATGGAATTTTTATTCATCAATCGACATATACAGAAAAAAATTTAAAAAGATTCTACATGGACAAAGCACACCCATTGAAAATTTCAATGGTGGTTCGATCATTAGATGTAAAAAATGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTATCGTACCTTAGTGCAATAGGTGCACCAATGTATCTTGCTAATAACACAAGACCAAATATAACATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAAAAAAAAGACATTGGAATGAAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGAGTTTGTTTTATTCAAATAAATCAAACTTTGATTTAGTTGGTTATGCAGATGTTGGATATTTATCTGATCCACACAAAACAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGTTATATCTTGGCGGTCTGTAAAGCAAACCATGGCGGCCACTTCATCGAATCATGTAGAAATTCTTGCAATTCATGAAACTAGTAGAGAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAATAAAAATTTACCAACAATATTATTTGAAGATAATATCACATGTATAGCACAAATCAAAGGAGGGTATATAAAAGGAGATAGAACAAAGCATATCTCACCAAAACTCTTCTATACGCATGACCTTGAAGAAAATGGTGACATTAGTGTTCAACAAATTTCTTCAAAAGACAACTTGACAGACTTATTCACAAAAGCATTACCCACATCAACATTTGAAAAGCTAGTGCACAACATTGGAATGCGACGACTCAGAGAACTTAAGTGA

Coding sequence (CDS)

ATGAAATATCTTGGTAAGACAAAATTTTGCCTTGGCTTACAAATCGAGCATTTAGCCGATGGAATTTTTATTCATCAATCGACATATACAGAAAAAAATTTAAAAAGATTCTACATGGACAAAGCACACCCATTGAAAATTTCAATGGTGGTTCGATCATTAGATGTAAAAAATGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTATCGTACCTTAGTGCAATAGGTGCACCAATGTATCTTGCTAATAACACAAGACCAAATATAACATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAAAAAAAAGACATTGGAATGAAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGAGTTTGTTTTATTCAAATAAATCAAACTTTGATTTAGTTGGTTATGCAGATGTTGGATATTTATCTGATCCACACAAAACAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGTTATATCTTGGCGGTCTGTAAAGCAAACCATGGCGGCCACTTCATCGAATCATGTAGAAATTCTTGCAATTCATGAAACTAGTAGAGAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAATAAAAATTTACCAACAATATTATTTGAAGATAATATCACATGTATAGCACAAATCAAAGGAGGGTATATAAAAGGAGATAGAACAAAGCATATCTCACCAAAACTCTTCTATACGCATGACCTTGAAGAAAATGGTGACATTAGTGTTCAACAAATTTCTTCAAAAGACAACTTGACAGACTTATTCACAAAAGCATTACCCACATCAACATTTGAAAAGCTAGTGCACAACATTGGAATGCGACGACTCAGAGAACTTAAGTGA

Protein sequence

MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGMRRLRELK

Homology

[Close]

BLAST of Cmc06g0160461 vs. NCBI nr
Match: KAA0067250.1 (Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa])

HSP 1 Score: 492.3 bits (1266), Expect = 3.1e-135
Identity = 242/269 (89.96%), Postives = 246/269 (91.45%), Query Frame = 0


Query: 39  MDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFS 98
           MDKAHPL I MVVRSLDVK DIFRPREDNEELLGPEV YLSAIGA M LANNTRP+I FS
Sbjct: 1   MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMCLANNTRPDIAFS 60

Query: 99  VNLLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTR 158
           VNLLARYSSSP KRHWN VKHVLRYLRGTIDMSLFYSNKSNFDLVGYAD GYLSDP K R
Sbjct: 61  VNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPDKAR 120

Query: 159 SQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRECVWLRSMTHHIRETCGLS 218
           SQ GYLFT GGT ISWRSVKQTM ATSSNH EILAIHE SRECVWLRSMTHHIRETCGLS
Sbjct: 121 SQIGYLFTWGGTAISWRSVKQTMTATSSNHAEILAIHEVSRECVWLRSMTHHIRETCGLS 180

Query: 219 FNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNL 278
           F+KNLPTILFEDN  CIAQIKGGYIKGDRTKH+SPKLFYTH+LEENGDISVQQISSKDNL
Sbjct: 181 FSKNLPTILFEDNTACIAQIKGGYIKGDRTKHMSPKLFYTHELEENGDISVQQISSKDNL 240

Query: 279 TDLFTKALPTSTFEKLVHNIGMRRLRELK 308
            DLFTKALPT TFEKLVHNIGM RLRELK
Sbjct: 241 VDLFTKALPTPTFEKLVHNIGMGRLRELK 269

[Close]

BLAST of Cmc06g0160461 vs. NCBI nr
Match: KAF7137709.1 (hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii])

HSP 1 Score: 491.1 bits (1263), Expect = 6.9e-135
Identity = 234/306 (76.47%), Postives = 258/306 (84.31%), Query Frame = 0


Query: 1    MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDI 60
            MK LGKTKFCLGLQIEHL +GI +HQS YTEK LK+FYMDKAHPL   MVVRSLDV  D 
Sbjct: 902  MKDLGKTKFCLGLQIEHLPNGILVHQSAYTEKVLKQFYMDKAHPLSTPMVVRSLDVNKDP 961

Query: 61   FRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHV 120
            FRP E+ E++LGPEV Y+SAIGA MYLAN TRP+I FSVNLLARYSS+P +RHW  +KH+
Sbjct: 962  FRPLEEGEDILGPEVPYMSAIGALMYLANCTRPDIAFSVNLLARYSSAPTQRHWKGIKHI 1021

Query: 121  LRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQT 180
             RYLRGTID+ LFYSN S   L+GYAD GYLSDPHK RSQTGY+FTCGG  ISWRSVKQT
Sbjct: 1022 FRYLRGTIDLGLFYSNGSASQLIGYADAGYLSDPHKARSQTGYVFTCGGAAISWRSVKQT 1081

Query: 181  MAATSSNHVEILAIHETSRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKG 240
            + ATSSNH EI+AIHETSRECVWLRSM  HIRE CGLS  K+ PTIL+EDN  CI QIKG
Sbjct: 1082 LTATSSNHSEIIAIHETSRECVWLRSMIQHIREKCGLSSIKDCPTILYEDNAACITQIKG 1141

Query: 241  GYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM 300
            GYIKGDRTKHISPK FYTHDL++NGDI VQQI S DNL DLFTKALPT+TF+KLV NIGM
Sbjct: 1142 GYIKGDRTKHISPKFFYTHDLQKNGDIDVQQIRSSDNLADLFTKALPTTTFKKLVANIGM 1201

Query: 301  RRLREL 307
            RRL+ L
Sbjct: 1202 RRLKNL 1207

[Close]

BLAST of Cmc06g0160461 vs. NCBI nr
Match: AQY61295.1 (Pol [Coffea arabica])

HSP 1 Score: 483.4 bits (1243), Expect = 1.4e-132
Identity = 231/308 (75.00%), Postives = 263/308 (85.39%), Query Frame = 0


Query: 1    MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDI 60
            +K  GKTKFCLGLQIEHL  GIF+HQ+ YT K LKRFYMDKAH L   MVVRSLD   D 
Sbjct: 853  IKDFGKTKFCLGLQIEHLKGGIFVHQTAYTRKVLKRFYMDKAHTLSTPMVVRSLDPNKDP 912

Query: 61   FRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHV 120
            FRPRE+NEE+LGPEV YLSAIGA MYLAN TRP+I+F+VNLLAR+SSSP +RHWN +KH+
Sbjct: 913  FRPREENEEILGPEVPYLSAIGALMYLANCTRPDISFAVNLLARFSSSPTRRHWNGIKHI 972

Query: 121  LRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQT 180
             RYL+GTID+ LFYSNKS  +LVGYAD GYLSDPHK RSQTGYLFT GGT ISWRS KQ+
Sbjct: 973  FRYLQGTIDLGLFYSNKSKPELVGYADAGYLSDPHKARSQTGYLFTYGGTAISWRSTKQS 1032

Query: 181  MAATSSNHVEILAIHETSRECVWLRSMTHHIRETCGLSFNK-NLPTILFEDNITCIAQIK 240
            +AATSSNH EI+AIHE SRECVWLRSMTH+IR+ CGLS  K N PTIL+EDN  CIAQ+K
Sbjct: 1033 LAATSSNHAEIIAIHEASRECVWLRSMTHYIRKNCGLSSGKENPPTILYEDNAACIAQLK 1092

Query: 241  GGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIG 300
            GGYIKGDRTKHISPK F+THDL++N +I VQQI S +NL DLFTKALPT+TFEKLV +IG
Sbjct: 1093 GGYIKGDRTKHISPKFFFTHDLQKNSEIDVQQIRSDNNLADLFTKALPTATFEKLVKSIG 1152

Query: 301  MRRLRELK 308
            M+RL++LK
Sbjct: 1153 MQRLKDLK 1160

[Close]

BLAST of Cmc06g0160461 vs. NCBI nr
Match: KAF7152015.1 (hypothetical protein RHSIM_Rhsim01G0238600 [Rhododendron simsii])

HSP 1 Score: 483.4 bits (1243), Expect = 1.4e-132
Identity = 229/306 (74.84%), Postives = 256/306 (83.66%), Query Frame = 0


Query: 1    MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDI 60
            MK LGKTKFCLGLQIEHL +GI +HQS YTEK LK+FYMDKAHPL   MVVRSLDV  D 
Sbjct: 906  MKDLGKTKFCLGLQIEHLPNGILVHQSAYTEKVLKQFYMDKAHPLSTPMVVRSLDVNKDP 965

Query: 61   FRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHV 120
            FRP E+ E++LGPEV Y+SAIGA MYLAN TRP+I FSVNLLARYSS+P +RHW  +KH+
Sbjct: 966  FRPLEEGEDILGPEVPYMSAIGALMYLANCTRPDIAFSVNLLARYSSAPTQRHWKGIKHI 1025

Query: 121  LRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQT 180
             RYLRGT+D+ LFYS  S   L+GYAD GYLSDPHK RSQTGY+F CGG  ISWRSVKQT
Sbjct: 1026 FRYLRGTVDLGLFYSKGSTSQLIGYADAGYLSDPHKARSQTGYVFMCGGAAISWRSVKQT 1085

Query: 181  MAATSSNHVEILAIHETSRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKG 240
            + ATSSNH EI+AIHETSRECVWLRSM  HIRE CGLS  K+ PTIL+EDN  CI QIKG
Sbjct: 1086 LTATSSNHSEIIAIHETSRECVWLRSMIQHIREKCGLSSIKDYPTILYEDNAACITQIKG 1145

Query: 241  GYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM 300
            GYIKGDRTKHISPK FYTHDL++NGDI VQQI S DNL D+FTKALPT+TF+KLV NIGM
Sbjct: 1146 GYIKGDRTKHISPKFFYTHDLQKNGDIDVQQIRSSDNLADVFTKALPTTTFKKLVANIGM 1205

Query: 301  RRLREL 307
             RL++L
Sbjct: 1206 CRLKDL 1211

[Close]

BLAST of Cmc06g0160461 vs. NCBI nr
Match: RVW59189.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 482.6 bits (1241), Expect = 2.5e-132
Identity = 230/306 (75.16%), Postives = 257/306 (83.99%), Query Frame = 0


Query: 1   MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDI 60
           MK LGKTKFCLGLQIEH  +G+ +HQSTY +K LKRFYMDKAHPL   MVVRSLDVK D 
Sbjct: 510 MKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDVKKDP 569

Query: 61  FRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHV 120
           FRP E +EELLGPEV YLSAIGA MYLAN TRP+I FSVNLLARYSS+P +RHWN +KH+
Sbjct: 570 FRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNGIKHI 629

Query: 121 LRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQT 180
           LRYLRGT DM LFYS +S   L+GYAD GYLSDPHK RSQTGY+F C GT ISWRSVKQT
Sbjct: 630 LRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRSQTGYVFNCNGTAISWRSVKQT 689

Query: 181 MAATSSNHVEILAIHETSRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKG 240
           M ATSSNH EILAIHE SREC+WLRSM  HIRE+CGLS  K  PT LFEDN  CIAQI G
Sbjct: 690 MVATSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSSIKGGPTTLFEDNAACIAQITG 749

Query: 241 GYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM 300
           GYIKGDRTKHISPK FYTH+L+++G+I VQQI S DNL DLFTK+LPTSTF+KL+H IGM
Sbjct: 750 GYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNLADLFTKSLPTSTFKKLIHRIGM 809

Query: 301 RRLREL 307
           R+L+++
Sbjct: 810 RQLKDI 815

[Close]

BLAST of Cmc06g0160461 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 156.0 bits (393), Expect = 6.9e-37
Identity = 97/307 (31.60%), Postives = 151/307 (49.19%), Query Frame = 0


Query: 1    MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDI 60
            M  L + K  +G++IE   D I++ QS Y +K L +F M+  + +   +           
Sbjct: 1114 MTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPL----------- 1173

Query: 61   FRPREDNEELLGPE----VSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNE 120
              P + N ELL  +        S IG  MY+   TRP++T +VN+L+RYSS      W  
Sbjct: 1174 --PSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQN 1233

Query: 121  VKHVLRYLRGTIDMSLFYSNKSNFD--LVGYADVGYLSDPHKTRSQTGYLFTC-GGTVIS 180
            +K VLRYL+GTIDM L +     F+  ++GY D  +       +S TGYLF      +I 
Sbjct: 1234 LKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLIC 1293

Query: 181  WRSVKQTMAATSSNHVEILAIHETSRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNIT 240
            W + +Q   A SS   E +A+ E  RE +WL+ +         ++     P  ++EDN  
Sbjct: 1294 WNTKRQNSVAASSTEAEYMALFEAVREALWLKFL------LTSINIKLENPIKIYEDNQG 1353

Query: 241  CIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEK 300
            CI+ I        R KHI  K  +  +  +N  I ++ I +++ L D+FTK LP + F +
Sbjct: 1354 CIS-IANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVE 1400

[Close]

BLAST of Cmc06g0160461 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.4e-34
Identity = 97/302 (32.12%), Postives = 150/302 (49.67%), Query Frame = 0


Query: 1    MKYLGKTKFCLGLQI--EHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKN 60
            MK LG  +  LG++I  E  +  +++ Q  Y E+ L+RF M  A P+   +       K 
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094

Query: 61   DIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVK 120
                P    E+    +V Y SA+G+ MY    TRP+I  +V +++R+  +P K HW  VK
Sbjct: 1095 --MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVK 1154

Query: 121  HVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVK 180
             +LRYLRGT    L +   S+  L GY D     D    +S TGYLFT  G  ISW+S  
Sbjct: 1155 WILRYLRGTTGDCLCFGG-SDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKL 1214

Query: 181  QTMAATSSNHVEILAIHETSRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQI 240
            Q   A S+   E +A  ET +E +WL+     +    GL   +    +++ D+ + I   
Sbjct: 1215 QKCVALSTTEAEYIAATETGKEMIWLKRFLQEL----GLHQKE---YVVYCDSQSAIDLS 1274

Query: 241  KGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNI 300
            K       RTKHI  +  +  ++ ++  + V +IS+ +N  D+ TK +P + FE     +
Sbjct: 1275 KNSMYHA-RTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELV 1325

[Close]

BLAST of Cmc06g0160461 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.4e-27
Identity = 81/292 (27.74%), Postives = 127/292 (43.49%), Query Frame = 0


Query: 9    FCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNE 68
            + LG++ + +  G+ + Q  YT   L R  M  A P+   M            +    + 
Sbjct: 1168 YFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSP--------KLTLHSG 1227

Query: 69   ELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHVLRYLRGTI 128
              L     Y   +G+  YLA  TRP+++++VN L++Y   P   HWN +K VLRYL GT 
Sbjct: 1228 TKLPDPTEYRGIVGSLQYLA-FTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTP 1287

Query: 129  DMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNH 188
            D  +F    +   L  Y+D  +  D     S  GY+   G   ISW S KQ     SS  
Sbjct: 1288 DHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTE 1347

Query: 189  VEILAIHETSRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRT 248
             E  ++  TS E  W+ S+         L    + P +++ DN+     +    +   R 
Sbjct: 1348 AEYRSVANTSSELQWICSLLTE------LGIQLSHPPVIYCDNVGA-TYLCANPVFHSRM 1407

Query: 249  KHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM 301
            KHI+    +  +  ++G + V  +S+ D L D  TK L    F+     IG+
Sbjct: 1408 KHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443

[Close]

BLAST of Cmc06g0160461 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.8e-24
Identity = 79/295 (26.78%), Postives = 131/295 (44.41%), Query Frame = 0


Query: 9    FCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNE 68
            + LG++ + +  G+ + Q  Y    L R  M  A P+   M   +   K  ++       
Sbjct: 1185 YFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPM---APSPKLSLY----SGT 1244

Query: 69   ELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHVLRYLRGTI 128
            +L  P   Y   +G+  YLA  TRP+I+++VN L+++   P + H   +K +LRYL GT 
Sbjct: 1245 KLTDP-TEYRGIVGSLQYLA-FTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTP 1304

Query: 129  DMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNH 188
            +  +F    +   L  Y+D  +  D     S  GY+   G   ISW S KQ     SS  
Sbjct: 1305 NHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTE 1364

Query: 189  VEILAIHETSRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRT 248
             E  ++  TS E  W+ S+         L      P +++ DN+     +    +   R 
Sbjct: 1365 AEYRSVANTSSEMQWICSLLTE------LGIRLTRPPVIYCDNVGA-TYLCANPVFHSRM 1424

Query: 249  KHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGMRRL 304
            KHI+    +  +  ++G + V  +S+ D L D  TK L  + F+     IG+ R+
Sbjct: 1425 KHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRV 1463

[Close]

BLAST of Cmc06g0160461 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.1e-24
Identity = 57/138 (41.30%), Postives = 79/138 (57.25%), Query Frame = 0


Query: 75  VSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFY 134
           V YLSA+GA MYL   TRP++  +V +L++++S P   HW  +K VLRYL+ T    L +
Sbjct: 4   VPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEF 63

Query: 135 SNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAI 194
           +      LVGY+D  +  D    RS +GYLF   G  +SWRS KQ   A SS   E +A+
Sbjct: 64  TRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMAL 123

Query: 195 HETSRECVWLRSMTHHIR 213
            E ++E VWL   T   +
Sbjct: 124 SEATQEAVWLTVRTRRTK 141

[Close]

BLAST of Cmc06g0160461 vs. ExPASy TrEMBL
Match: A0A5D3CKU4 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.5e-135
Identity = 242/269 (89.96%), Postives = 246/269 (91.45%), Query Frame = 0


Query: 39  MDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFS 98
           MDKAHPL I MVVRSLDVK DIFRPREDNEELLGPEV YLSAIGA M LANNTRP+I FS
Sbjct: 1   MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMCLANNTRPDIAFS 60

Query: 99  VNLLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTR 158
           VNLLARYSSSP KRHWN VKHVLRYLRGTIDMSLFYSNKSNFDLVGYAD GYLSDP K R
Sbjct: 61  VNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPDKAR 120

Query: 159 SQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRECVWLRSMTHHIRETCGLS 218
           SQ GYLFT GGT ISWRSVKQTM ATSSNH EILAIHE SRECVWLRSMTHHIRETCGLS
Sbjct: 121 SQIGYLFTWGGTAISWRSVKQTMTATSSNHAEILAIHEVSRECVWLRSMTHHIRETCGLS 180

Query: 219 FNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNL 278
           F+KNLPTILFEDN  CIAQIKGGYIKGDRTKH+SPKLFYTH+LEENGDISVQQISSKDNL
Sbjct: 181 FSKNLPTILFEDNTACIAQIKGGYIKGDRTKHMSPKLFYTHELEENGDISVQQISSKDNL 240

Query: 279 TDLFTKALPTSTFEKLVHNIGMRRLRELK 308
            DLFTKALPT TFEKLVHNIGM RLRELK
Sbjct: 241 VDLFTKALPTPTFEKLVHNIGMGRLRELK 269

[Close]

BLAST of Cmc06g0160461 vs. ExPASy TrEMBL
Match: A0A2N9HZE8 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45337 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 2.2e-134
Identity = 236/306 (77.12%), Postives = 261/306 (85.29%), Query Frame = 0


Query: 1   MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDI 60
           MK LGKTKFCLGLQIEHL DGI IHQSTYTEK LK F+MDKAHPL   MVVRSLDVK D 
Sbjct: 482 MKDLGKTKFCLGLQIEHLPDGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDP 541

Query: 61  FRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHV 120
           FRP+E  EE LGPEV YLSAIGA MYLAN TRP+I FSVNLLARYSS+P  RHWN VKHV
Sbjct: 542 FRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKHV 601

Query: 121 LRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQT 180
           LRYLRGT DM LFY NKSN  LVGYAD GYLSDPHK RSQTGYLFTCG T ISWRSVKQT
Sbjct: 602 LRYLRGTTDMRLFYPNKSNPQLVGYADAGYLSDPHKGRSQTGYLFTCGDTAISWRSVKQT 661

Query: 181 MAATSSNHVEILAIHETSRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKG 240
           ++ATSSNH EI+AIHE SRECVWLRS+  HIRE CGLS  K+ PTIL+EDN  CI QI+G
Sbjct: 662 ISATSSNHSEIIAIHEASRECVWLRSVIQHIREKCGLSSIKDNPTILYEDNAACITQIRG 721

Query: 241 GYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM 300
           GYIKGDR KHISPK FYTH+L+++GDI+V+QI S +NL D+FTK+LPT+TF+K+VHNIGM
Sbjct: 722 GYIKGDRIKHISPKFFYTHELQKSGDINVKQIRSSENLADIFTKSLPTTTFKKIVHNIGM 781

Query: 301 RRLREL 307
           RRL++L
Sbjct: 782 RRLKDL 787

[Close]

BLAST of Cmc06g0160461 vs. ExPASy TrEMBL
Match: A0A2N9GCM9 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28208 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 2.2e-134
Identity = 236/306 (77.12%), Postives = 261/306 (85.29%), Query Frame = 0


Query: 1   MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDI 60
           MK LGKTKFCLGLQIEHL DGI IHQSTYTEK LK F+MDKAHPL   MVVRSLDVK D 
Sbjct: 65  MKDLGKTKFCLGLQIEHLPDGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDP 124

Query: 61  FRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHV 120
           FRP+E  EE LGPEV YLSAIGA MYLAN TRP+I FSVNLLARYSS+P  RHWN VKHV
Sbjct: 125 FRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKHV 184

Query: 121 LRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQT 180
           LRYLRGT DM LFY NKSN  LVGYAD GYLSDPHK RSQTGYLFTCG T ISWRSVKQT
Sbjct: 185 LRYLRGTTDMRLFYPNKSNPQLVGYADAGYLSDPHKGRSQTGYLFTCGDTAISWRSVKQT 244

Query: 181 MAATSSNHVEILAIHETSRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKG 240
           ++ATSSNH EI+AIHE SRECVWLRS+  HIRE CGLS  K+ PTIL+EDN  CI QI+G
Sbjct: 245 ISATSSNHSEIIAIHEASRECVWLRSVIQHIREKCGLSSIKDNPTILYEDNAACITQIRG 304

Query: 241 GYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM 300
           GYIKGDRTKHISPK FYTH+L+++GDI V+QI S +NL D+FTK+LPT+TF+K+VH+IGM
Sbjct: 305 GYIKGDRTKHISPKFFYTHELQKSGDIDVKQIRSSENLVDIFTKSLPTTTFKKIVHSIGM 364

Query: 301 RRLREL 307
           RRL++L
Sbjct: 365 RRLKDL 370

[Close]

BLAST of Cmc06g0160461 vs. ExPASy TrEMBL
Match: A0A2N9IR78 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54505 PE=4 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 6.3e-134
Identity = 235/306 (76.80%), Postives = 260/306 (84.97%), Query Frame = 0


Query: 1   MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDI 60
           MK LGKTKFCLGLQIEHL DGI IHQSTY EK LK F+MDKAHPL   MVVRSLDVK D 
Sbjct: 294 MKDLGKTKFCLGLQIEHLPDGILIHQSTYIEKVLKHFHMDKAHPLSTPMVVRSLDVKKDP 353

Query: 61  FRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHV 120
           FRP+E  EE LGPEV YLSAIGA MYLAN TRP+I FSVNLLARYSS+P  RHWN VKHV
Sbjct: 354 FRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKHV 413

Query: 121 LRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQT 180
           LRYLRGT DM LFY NKSN  LVGYAD GYLSDPHK RSQTGYLFTCG T ISWRSVKQT
Sbjct: 414 LRYLRGTTDMGLFYPNKSNPQLVGYADAGYLSDPHKGRSQTGYLFTCGNTAISWRSVKQT 473

Query: 181 MAATSSNHVEILAIHETSRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKG 240
           ++ATSSNH EI+AIHE SRECVWLRS+  HIRE CGLS  K+ PTIL+EDN  CI QI+G
Sbjct: 474 ISATSSNHSEIIAIHEASRECVWLRSVIQHIREKCGLSSIKDNPTILYEDNAACITQIRG 533

Query: 241 GYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM 300
           GYIKGDRTKHISPK FYTH+L+++GDI V+QI S +NL D+FTK+LPT+TF+K+VH+IGM
Sbjct: 534 GYIKGDRTKHISPKFFYTHELQKSGDIDVKQIRSSENLADIFTKSLPTTTFKKIVHSIGM 593

Query: 301 RRLREL 307
           RRL++L
Sbjct: 594 RRLKDL 599

[Close]

BLAST of Cmc06g0160461 vs. ExPASy TrEMBL
Match: A0A2N9FE48 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13021 PE=4 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 6.3e-134
Identity = 235/306 (76.80%), Postives = 260/306 (84.97%), Query Frame = 0


Query: 1   MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDI 60
           MK LGKTKFCLGLQIEHL DGI IHQSTYTEK LK F+MDKAHPL   MVVRSLDVK D 
Sbjct: 65  MKDLGKTKFCLGLQIEHLPDGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDP 124

Query: 61  FRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHV 120
           FRP+E  EE LGPEV YLSAIGA MYLAN TRP+I FSVNLLARYSS+P  RHWN VKHV
Sbjct: 125 FRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKHV 184

Query: 121 LRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQT 180
           LRYLRGT DM LFY NKSN  LVGYAD GYLSDPHK RSQTGYLFTCG T ISWRSVKQT
Sbjct: 185 LRYLRGTTDMGLFYPNKSNPQLVGYADAGYLSDPHKGRSQTGYLFTCGNTAISWRSVKQT 244

Query: 181 MAATSSNHVEILAIHETSRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKG 240
           ++ATSSNH EI+AIHE SRECVWLRS+  HIRE CGLS  K+ PTIL+EDN  CI QI+G
Sbjct: 245 ISATSSNHSEIIAIHEASRECVWLRSVIQHIREKCGLSSIKDNPTILYEDNAACITQIRG 304

Query: 241 GYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM 300
           GYIKGDR KHISPK FYTH+L+++GDI V+QI S +NL D+FTK+LPT+TF+K+VH+IGM
Sbjct: 305 GYIKGDRIKHISPKFFYTHELQKSGDIDVKQIRSSENLADIFTKSLPTTTFKKIVHSIGM 364

Query: 301 RRLREL 307
           RRL++L
Sbjct: 365 RRLKDL 370

[Close]

BLAST of Cmc06g0160461 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 110.9 bits (276), Expect = 1.8e-24
Identity = 92/315 (29.21%), Postives = 138/315 (43.81%), Query Frame = 0


Query: 1   MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISM---VVRSLDVK 60
           ++ LG  K+ LGL+I   A GI I Q  Y    L    +    P  + M   V  S    
Sbjct: 310 LRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSG 369

Query: 61  NDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEV 120
            D    +           +Y   IG  MYL   TR +I+F+VN L+++S +P+  H   V
Sbjct: 370 GDFVDAK-----------AYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAV 429

Query: 121 KHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSV 180
             +L Y++GT+   LFYS+++   L  ++D  + S     RS  GY    G ++ISW+S 
Sbjct: 430 MKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSK 489

Query: 181 KQTMAATSSNHVEILAIHETSRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQ 240
           KQ + + SS   E  A+   + E +WL      ++    L  +K  PT+LF DN T    
Sbjct: 490 KQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQ----LPLSK--PTLLFCDN-TAAIH 549

Query: 241 IKGGYIKGDRTKHISPKLFYTHDLEENG------DISVQQISSKDNLTDLFTKALPTSTF 300
           I    +  +RTKHI       H + E          S Q    +D  T+  +  L   T 
Sbjct: 550 IATNAVFHERTKHIESD---CHSVRERSVYQATLSYSFQAYDEQDGFTEYLSPIL-RGTI 601

Query: 301 EKLVHNIGMRRLREL 307
             +V   G+  L  L
Sbjct: 610 MYIVSMFGLAGLEAL 601

[Close]

BLAST of Cmc06g0160461 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 89.0 bits (219), Expect = 7.3e-18
Identity = 56/203 (27.59%), Postives = 96/203 (47.29%), Query Frame = 0


Query: 1   MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDI 60
           MK LG   + LG+QI+    G+F+ Q+ Y E+ L    M    P+   +    L + + +
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPL---PLKLNSSV 92

Query: 61  FRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHV 120
              +  +         + S +GA  YL   TRP+I+++VN++ +    P    ++ +K V
Sbjct: 93  STAKYPDPS------DFRSIVGALQYL-TLTRPDISYAVNIVCQRMHEPTLADFDLLKRV 152

Query: 121 LRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQT 180
           LRY++GTI   L+    S  ++  + D  +       RS TG+    G  +ISW + +Q 
Sbjct: 153 LRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQP 212

Query: 181 MAATSSNHVEILAIHETSRECVW 204
             + SS   E  A+  T+ E  W
Sbjct: 213 TVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc06g0160461 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-10
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 85  MYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVG 144
           MYL   TRP++TF+VN L+++SS+ +      V  VL Y++GT+   LFYS  S+  L  
Sbjct: 1   MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 145 YADVGYLSDPHKTRSQTGY 164
           +AD  + S P   RS TG+
Sbjct: 61  FADSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of Cmc06g0160461 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067250.1	3.1e-135	89.96	Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa]	[more]
KAF7137709.1	6.9e-135	76.47	hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii]	[more]
AQY61295.1	1.4e-132	75.00	Pol [Coffea arabica]	[more]
KAF7152015.1	1.4e-132	74.84	hypothetical protein RHSIM_Rhsim01G0238600 [Rhododendron simsii]	[more]
RVW59189.1	2.5e-132	75.16	Copia protein [Vitis vinifera]	[more]

BLAST of Cmc06g0160461 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	6.9e-37	31.60	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	1.4e-34	32.12	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	8.4e-27	27.74	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.8e-24	26.78	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P0CV72	5.1e-24	41.30	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc06g0160461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CKU4	1.5e-135	89.96	Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1	[more]
A0A2N9HZE8	2.2e-134	77.12	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9GCM9	2.2e-134	77.12	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9IR78	6.3e-134	76.80	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9FE48	6.3e-134	76.80	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]

BLAST of Cmc06g0160461 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.8e-24	29.21	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	7.3e-18	27.59	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	3.3e-10	41.77	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 59..167
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 59..167
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 143..288 e-value: 8.97724E-45 score: 147.23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0160461.1	Cmc06g0160461.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding