Cmc05g0129321 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0129321
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr05: 7175900 .. 7176484 (+)
RNA-Seq Expression	Cmc05g0129321
Synteny	Cmc05g0129321

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCTCCTCGAACCATCCATTTTACTACGGTTTTACACATCCTTCACTATTTCAAGGGAACTTTGGGGCATGGACTTCAATTTTCTTCTCAATCTTCCCTCGTGTTATATGACTACTCTAATACAGATTGGGCTAGGGATCATATCGATCGACATTCTACAATAGGTTACTGTTTCTACCAAGGAGATCCTCTCATTTCTTGGCGTAGTAAGAAACAAAGTGTTGTCTCTCGTTTCAGTACTGAATCAGAATATCATGCTCTTGCTAATGCTATCGCTGAACTCTTATGGCTTCATTGGCTCCTTGCTGATATGGGTGTCCCTCAACAAGGTCTTACCCTACTTCATTGGGACAATCGTAGTGCCATCCAAATTACTTACAATGATGTCTTCCATGAGCATACGAAGCACATCGAAAATGACATTAACTTCGTTCATCATCATCTCTTGAGAAATACACTCTTTTTACGCTCTGTCTCCACCACTGAGCAATTGGCAGATATCTTCACCAAAGCTTTACCGTCTAACCGCATCAGTCAATTATTTACCAAACTCAAGCTAACAGCTACTCTACCGTCTTGA

mRNA sequence

ATGGTTGCTCCTCGAACCATCCATTTTACTACGGTTTTACACATCCTTCACTATTTCAAGGGAACTTTGGGGCATGGACTTCAATTTTCTTCTCAATCTTCCCTCGTGTTATATGACTACTCTAATACAGATTGGGCTAGGGATCATATCGATCGACATTCTACAATAGGTTACTGTTTCTACCAAGGAGATCCTCTCATTTCTTGGCGTAGTAAGAAACAAAGTGTTGTCTCTCGTTTCAGTACTGAATCAGAATATCATGCTCTTGCTAATGCTATCGCTGAACTCTTATGGCTTCATTGGCTCCTTGCTGATATGGGTGTCCCTCAACAAGGTCTTACCCTACTTCATTGGGACAATCGTAGTGCCATCCAAATTACTTACAATGATGTCTTCCATGAGCATACGAAGCACATCGAAAATGACATTAACTTCGTTCATCATCATCTCTTGAGAAATACACTCTTTTTACGCTCTGTCTCCACCACTGAGCAATTGGCAGATATCTTCACCAAAGCTTTACCGTCTAACCGCATCAGTCAATTATTTACCAAACTCAAGCTAACAGCTACTCTACCGTCTTGA

Coding sequence (CDS)

ATGGTTGCTCCTCGAACCATCCATTTTACTACGGTTTTACACATCCTTCACTATTTCAAGGGAACTTTGGGGCATGGACTTCAATTTTCTTCTCAATCTTCCCTCGTGTTATATGACTACTCTAATACAGATTGGGCTAGGGATCATATCGATCGACATTCTACAATAGGTTACTGTTTCTACCAAGGAGATCCTCTCATTTCTTGGCGTAGTAAGAAACAAAGTGTTGTCTCTCGTTTCAGTACTGAATCAGAATATCATGCTCTTGCTAATGCTATCGCTGAACTCTTATGGCTTCATTGGCTCCTTGCTGATATGGGTGTCCCTCAACAAGGTCTTACCCTACTTCATTGGGACAATCGTAGTGCCATCCAAATTACTTACAATGATGTCTTCCATGAGCATACGAAGCACATCGAAAATGACATTAACTTCGTTCATCATCATCTCTTGAGAAATACACTCTTTTTACGCTCTGTCTCCACCACTGAGCAATTGGCAGATATCTTCACCAAAGCTTTACCGTCTAACCGCATCAGTCAATTATTTACCAAACTCAAGCTAACAGCTACTCTACCGTCTTGA

Protein sequence

MVAPRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCFYQGDPLISWRSKKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDNRSAIQITYNDVFHEHTKHIENDINFVHHHLLRNTLFLRSVSTTEQLADIFTKALPSNRISQLFTKLKLTATLPS

Homology

[Close]

BLAST of Cmc05g0129321 vs. NCBI nr
Match: KAA0032009.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK16830.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 397.5 bits (1020), Expect = 6.6e-107
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MVAPRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCF 60
           MVAPRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCF
Sbjct: 1   MVAPRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCF 60

Query: 61  YQGDPLISWRSKKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDN 120
           YQGDPLISWRSKKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDN
Sbjct: 61  YQGDPLISWRSKKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDN 120

Query: 121 RSAIQITYNDVFHEHTKHIENDINFVHHHLLRNTLFLRSVSTTEQLADIFTKALPSNRIS 180
           RSAIQITYNDVFHEHTKHIENDINFVHHHLLRNTLFLRSVSTTEQLADIFTKALPSNRIS
Sbjct: 121 RSAIQITYNDVFHEHTKHIENDINFVHHHLLRNTLFLRSVSTTEQLADIFTKALPSNRIS 180

Query: 181 QLFTKLKLTATLPS 195
           QLFTKLKLTATLPS
Sbjct: 181 QLFTKLKLTATLPS 194

[Close]

BLAST of Cmc05g0129321 vs. NCBI nr
Match: XP_031743962.1 (uncharacterized protein LOC116404739 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 5.8e-79
Identity = 154/193 (79.79%), Postives = 160/193 (82.90%), Query Frame = 0


Query: 1   MVAPRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCF 60
           M  PRTIHFT VL IL Y KGTLGHGLQFSSQSSLVLY YS+ DWARD  DR ST GYCF
Sbjct: 97  MATPRTIHFTDVLRILRYVKGTLGHGLQFSSQSSLVLYGYSDADWARDPTDRRSTTGYCF 156

Query: 61  YQGDPLISWRSKKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDN 120
           Y GD LISWRSKKQSV+SR STESEYHALA+A AEL+WL WLLADMGVPQ G TLLH DN
Sbjct: 157 YLGDSLISWRSKKQSVISRSSTESEYHALADATAELIWLRWLLADMGVPQHGPTLLHCDN 216

Query: 121 RSAIQITYNDVFHEHTKHIENDINFVHHHLLRNTLFLRSVSTTEQLADIFTKALPSNRIS 180
           RSAIQI +NDVFHE TKHIEND +FV HHLL NTL LRSVST EQ ADIFTKALPSNR  
Sbjct: 217 RSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPADIFTKALPSNRFC 276

Query: 181 QLFTKLKLTATLP 194
           QL TKLKL  TLP
Sbjct: 277 QLLTKLKLIVTLP 289

[Close]

BLAST of Cmc05g0129321 vs. NCBI nr
Match: XP_031741718.1 (uncharacterized protein LOC116403914 [Cucumis sativus])

HSP 1 Score: 301.2 bits (770), Expect = 6.4e-78
Identity = 154/193 (79.79%), Postives = 160/193 (82.90%), Query Frame = 0


Query: 1   MVAPRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCF 60
           M APRTIHFT VL IL Y KGTLGHGLQFSSQSSLVL  YS+ DWA D  DR ST GYCF
Sbjct: 128 MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 187

Query: 61  YQGDPLISWRSKKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDN 120
           Y GD LISWRSKKQSV+SR STESEY ALA+A AEL+WL WLLADMGVPQQG TLLH DN
Sbjct: 188 YLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDN 247

Query: 121 RSAIQITYNDVFHEHTKHIENDINFVHHHLLRNTLFLRSVSTTEQLADIFTKALPSNRIS 180
           RSAIQI +NDVFHE TKHIEND +FV HHLL NTL LRSVST EQ ADIFTKALPSNR  
Sbjct: 248 RSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPADIFTKALPSNRFC 307

Query: 181 QLFTKLKLTATLP 194
           QL TKLKL ATLP
Sbjct: 308 QLLTKLKLVATLP 320

[Close]

BLAST of Cmc05g0129321 vs. NCBI nr
Match: XP_031742303.1 (uncharacterized protein LOC116404150 [Cucumis sativus])

HSP 1 Score: 299.3 bits (765), Expect = 2.4e-77
Identity = 153/193 (79.27%), Postives = 159/193 (82.38%), Query Frame = 0


Query: 1   MVAPRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCF 60
           M APRTIHFT VL I  Y KGTLGHGLQFSSQSSLVL  YS+ DWA D  DR ST GYCF
Sbjct: 97  MAAPRTIHFTVVLRIFRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 156

Query: 61  YQGDPLISWRSKKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDN 120
           Y GD LISWRSKKQSV+SR STESEY ALA+A AEL+WL WLLADMGVPQQG TLLH DN
Sbjct: 157 YLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDN 216

Query: 121 RSAIQITYNDVFHEHTKHIENDINFVHHHLLRNTLFLRSVSTTEQLADIFTKALPSNRIS 180
           RSAIQI +NDVFHE TKHIEND +FV HHLL NTL LRSVST EQ ADIFTKALPSNR  
Sbjct: 217 RSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPADIFTKALPSNRFC 276

Query: 181 QLFTKLKLTATLP 194
           QL TKLKL ATLP
Sbjct: 277 QLLTKLKLIATLP 289

[Close]

BLAST of Cmc05g0129321 vs. NCBI nr
Match: KAA0037745.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 298.9 bits (764), Expect = 3.2e-77
Identity = 152/193 (78.76%), Postives = 162/193 (83.94%), Query Frame = 0


Query: 1    MVAPRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCF 60
            M APRTIHFT VL IL Y KGTLGHGLQFSSQSSLVL  YS+ DWA D  DR ST GYCF
Sbjct: 1141 MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 1200

Query: 61   YQGDPLISWRSKKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDN 120
            Y GD LISWRSKKQSVVSR STESEY ALA+A AELLWL WLLADMGVPQQG TLLH DN
Sbjct: 1201 YLGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVPQQGPTLLHCDN 1260

Query: 121  RSAIQITYNDVFHEHTKHIENDINFVHHHLLRNTLFLRSVSTTEQLADIFTKALPSNRIS 180
            RSAIQI +NDVFHE TKHIEND +F+ HHLL +TL L+S+STTEQ ADIFTKALPS R +
Sbjct: 1261 RSAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQSISTTEQPADIFTKALPSTRFN 1320

Query: 181  QLFTKLKLTATLP 194
            Q+ TKLKLTATLP
Sbjct: 1321 QIRTKLKLTATLP 1333

[Close]

BLAST of Cmc05g0129321 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.4e-27
Identity = 73/194 (37.63%), Postives = 101/194 (52.06%), Query Frame = 0


Query: 1    MVAPRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCF 60
            M  P   H   +  IL Y  GT  HG+     ++L L+ YS+ DWA D  D  ST GY  
Sbjct: 1273 MHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIV 1332

Query: 61   YQGDPLISWRSKKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDN 120
            Y G   ISW SKKQ  V R STE+EY ++AN  +E+ W+  LL ++G+      +++ DN
Sbjct: 1333 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDN 1392

Query: 121  RSAIQITYNDVFHEHTKHIENDINFVHHHLLRNTLFLRSVSTTEQLADIFTKALPSNRIS 180
              A  +  N VFH   KHI  D +F+ + +    L +  VST +QLAD  TK L      
Sbjct: 1393 VGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQ 1452

Query: 181  QLFTKLKLTATLPS 195
               +K+ +T   PS
Sbjct: 1453 NFASKIGVTRVPPS 1466

[Close]

BLAST of Cmc05g0129321 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-26
Identity = 72/194 (37.11%), Postives = 100/194 (51.55%), Query Frame = 0


Query: 1    MVAPRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCF 60
            M  P   H+  +  +L Y  GT  HG+     ++L L+ YS+ DWA D  D  ST GY  
Sbjct: 1256 MHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIV 1315

Query: 61   YQGDPLISWRSKKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDN 120
            Y G   ISW SKKQ  V R STE+EY ++AN  +EL W+  LL ++G+      +++ DN
Sbjct: 1316 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDN 1375

Query: 121  RSAIQITYNDVFHEHTKHIENDINFVHHHLLRNTLFLRSVSTTEQLADIFTKALPSNRIS 180
              A  +  N VFH   KHI  D +F+ + +    L +  VST +QLAD  TK L      
Sbjct: 1376 VGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQ 1435

Query: 181  QLFTKLKLTATLPS 195
                K+ +    PS
Sbjct: 1436 NFSRKIGVIKVPPS 1449

[Close]

BLAST of Cmc05g0129321 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 115.2 bits (287), Expect = 8.5e-25
Identity = 68/177 (38.42%), Postives = 95/177 (53.67%), Query Frame = 0


Query: 15   ILHYFKGTLGHGLQFSSQSSL--VLYDYSNTDWARDHIDRHSTIGYCFYQGD-PLISWRS 74
            +L Y KGT+   L F    +    +  Y ++DWA   IDR ST GY F   D  LI W +
Sbjct: 1224 VLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNT 1283

Query: 75   KKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDNRSAIQITYNDV 134
            K+Q+ V+  STE+EY AL  A+ E LWL +LL  + +  +    ++ DN+  I I  N  
Sbjct: 1284 KRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPS 1343

Query: 135  FHEHTKHIENDINFVHHHLLRNTLFLRSVSTTEQLADIFTKALPSNRISQLFTKLKL 189
             H+  KHI+   +F    +  N + L  + T  QLADIFTK LP+ R  +L  KL L
Sbjct: 1344 CHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc05g0129321 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.3e-20
Identity = 60/175 (34.29%), Postives = 97/175 (55.43%), Query Frame = 0


Query: 4    PRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCFYQG 63
            P   H+  V  IL Y +GT G  L F   S  +L  Y++ D A D  +R S+ GY F   
Sbjct: 1143 PGKEHWEAVKWILRYLRGTTGDCLCFGG-SDPILKGYTDADMAGDIDNRKSSTGYLFTFS 1202

Query: 64   DPLISWRSKKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDNRSA 123
               ISW+SK Q  V+  +TE+EY A      E++WL   L ++G+ Q+   +++ D++SA
Sbjct: 1203 GGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEY-VVYCDSQSA 1262

Query: 124  IQITYNDVFHEHTKHIENDINFVHHHLLRNTLFLRSVSTTEQLADIFTKALPSNR 179
            I ++ N ++H  TKHI+   +++   +   +L +  +ST E  AD+ TK +P N+
Sbjct: 1263 IDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNK 1315

[Close]

BLAST of Cmc05g0129321 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.0e-15
Identity = 42/98 (42.86%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 1   MVAPRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCF 60
           M  P    F  +  +L Y KGT+ HGL     S L +  + ++DWA     R ST G+C 
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187

Query: 61  YQGDPLISWRSKKQSVVSRFSTESEYHALANAIAELLW 99
           + G  +ISW +K+Q  VSR STE+EY ALA   AEL W
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc05g0129321 vs. ExPASy TrEMBL
Match: A0A5D3CZP2 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001050 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.2e-107
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MVAPRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCF 60
           MVAPRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCF
Sbjct: 1   MVAPRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCF 60

Query: 61  YQGDPLISWRSKKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDN 120
           YQGDPLISWRSKKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDN
Sbjct: 61  YQGDPLISWRSKKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDN 120

Query: 121 RSAIQITYNDVFHEHTKHIENDINFVHHHLLRNTLFLRSVSTTEQLADIFTKALPSNRIS 180
           RSAIQITYNDVFHEHTKHIENDINFVHHHLLRNTLFLRSVSTTEQLADIFTKALPSNRIS
Sbjct: 121 RSAIQITYNDVFHEHTKHIENDINFVHHHLLRNTLFLRSVSTTEQLADIFTKALPSNRIS 180

Query: 181 QLFTKLKLTATLPS 195
           QLFTKLKLTATLPS
Sbjct: 181 QLFTKLKLTATLPS 194

[Close]

BLAST of Cmc05g0129321 vs. ExPASy TrEMBL
Match: A0A5A7VIT8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00050 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.5e-77
Identity = 152/193 (78.76%), Postives = 162/193 (83.94%), Query Frame = 0


Query: 1    MVAPRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCF 60
            M APRTIHFT VL IL Y KGTLGHGLQFSSQSSLVL  YS+ DWA D  DR ST GYCF
Sbjct: 1141 MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 1200

Query: 61   YQGDPLISWRSKKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDN 120
            Y GD LISWRSKKQSVVSR STESEY ALA+A AELLWL WLLADMGVPQQG TLLH DN
Sbjct: 1201 YLGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVPQQGPTLLHCDN 1260

Query: 121  RSAIQITYNDVFHEHTKHIENDINFVHHHLLRNTLFLRSVSTTEQLADIFTKALPSNRIS 180
            RSAIQI +NDVFHE TKHIEND +F+ HHLL +TL L+S+STTEQ ADIFTKALPS R +
Sbjct: 1261 RSAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQSISTTEQPADIFTKALPSTRFN 1320

Query: 181  QLFTKLKLTATLP 194
            Q+ TKLKLTATLP
Sbjct: 1321 QIRTKLKLTATLP 1333

[Close]

BLAST of Cmc05g0129321 vs. ExPASy TrEMBL
Match: A0A5A7T8F2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00410 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.5e-77
Identity = 152/193 (78.76%), Postives = 162/193 (83.94%), Query Frame = 0


Query: 1    MVAPRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCF 60
            M APRTIHFT VL IL Y KGTLGHGLQFSSQSSLVL  YS+ DWA D  DR ST GYCF
Sbjct: 1141 MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 1200

Query: 61   YQGDPLISWRSKKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDN 120
            Y GD LISWRSKKQSVVSR STESEY ALA+A AELLWL WLLADMGVPQQG TLLH DN
Sbjct: 1201 YLGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVPQQGPTLLHCDN 1260

Query: 121  RSAIQITYNDVFHEHTKHIENDINFVHHHLLRNTLFLRSVSTTEQLADIFTKALPSNRIS 180
            RSAIQI +NDVFHE TKHIEND +F+ HHLL +TL L+S+STTEQ ADIFTKALPS R +
Sbjct: 1261 RSAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQSISTTEQPADIFTKALPSTRFN 1320

Query: 181  QLFTKLKLTATLP 194
            Q+ TKLKLTATLP
Sbjct: 1321 QIRTKLKLTATLP 1333

[Close]

BLAST of Cmc05g0129321 vs. ExPASy TrEMBL
Match: A0A5A7U2E5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00550 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.6e-77
Identity = 151/193 (78.24%), Postives = 162/193 (83.94%), Query Frame = 0


Query: 1   MVAPRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCF 60
           M APRTIHFT VL IL Y KGTLGHGLQFSSQSSLVL  YS+ DWA D  DR ST GYCF
Sbjct: 400 MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 459

Query: 61  YQGDPLISWRSKKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDN 120
           Y GD LISWR+KKQSVVSR STESEYHALA+A AELLWL WLLADMGVPQQG TLLH DN
Sbjct: 460 YLGDSLISWRNKKQSVVSRSSTESEYHALADATAELLWLRWLLADMGVPQQGPTLLHCDN 519

Query: 121 RSAIQITYNDVFHEHTKHIENDINFVHHHLLRNTLFLRSVSTTEQLADIFTKALPSNRIS 180
           RSAIQI +NDVFHE TKHIEND +F+ HHLL +TL L+ VSTTEQ ADIFTKALPS R +
Sbjct: 520 RSAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFN 579

Query: 181 QLFTKLKLTATLP 194
           Q+ TKL+LTATLP
Sbjct: 580 QIRTKLRLTATLP 592

[Close]

BLAST of Cmc05g0129321 vs. ExPASy TrEMBL
Match: A0A5D3E4B0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2254G00020 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.6e-77
Identity = 152/193 (78.76%), Postives = 161/193 (83.42%), Query Frame = 0


Query: 1   MVAPRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCF 60
           M APRTIHFT VL IL Y KGTLGHGLQFSSQSSLVL  YS+ DWA D  DR ST GYCF
Sbjct: 208 MAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 267

Query: 61  YQGDPLISWRSKKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDN 120
           Y GD LISWRSKKQSVVSR STESEY ALA+  AELLWLHWLLADMGVPQQG TLL+ DN
Sbjct: 268 YLGDSLISWRSKKQSVVSRSSTESEYRALADTTAELLWLHWLLADMGVPQQGPTLLYCDN 327

Query: 121 RSAIQITYNDVFHEHTKHIENDINFVHHHLLRNTLFLRSVSTTEQLADIFTKALPSNRIS 180
           RSAIQI +NDVFHE TKHIEND +F+ HHLL NTL L+ VSTT+Q ADIFTKALPS R +
Sbjct: 328 RSAIQIAHNDVFHERTKHIENDCHFIRHHLLSNTLLLQPVSTTKQPADIFTKALPSTRFN 387

Query: 181 QLFTKLKLTATLP 194
           QL TKLKLTATLP
Sbjct: 388 QLRTKLKLTATLP 400

[Close]

BLAST of Cmc05g0129321 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 131.7 bits (330), Expect = 6.2e-31
Identity = 69/144 (47.92%), Postives = 90/144 (62.50%), Query Frame = 0


Query: 3   APRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCFYQ 62
           APR  H   V+ ILHY KGT+G GL +SSQ+ + L  +S+  +      R ST GYC + 
Sbjct: 408 APRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFL 467

Query: 63  GDPLISWRSKKQSVVSRFSTESEYHALANAIAELLWLHWLLADMGVPQQGLTLLHWDNRS 122
           G  LISW+SKKQ VVS+ S E+EY AL+ A  E++WL     ++ +P    TLL  DN +
Sbjct: 468 GTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTA 527

Query: 123 AIQITYNDVFHEHTKHIENDINFV 147
           AI I  N VFHE TKHIE+D + V
Sbjct: 528 AIHIATNAVFHERTKHIESDCHSV 551

[Close]

BLAST of Cmc05g0129321 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 5.7e-16
Identity = 42/98 (42.86%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 1   MVAPRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYCF 60
           M  P    F  +  +L Y KGT+ HGL     S L +  + ++DWA     R ST G+C 
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187

Query: 61  YQGDPLISWRSKKQSVVSRFSTESEYHALANAIAELLW 99
           + G  +ISW +K+Q  VSR STE+EY ALA   AEL W
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc05g0129321 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.4e-06
Identity = 24/57 (42.11%), Postives = 33/57 (57.89%), Query Frame = 0


Query: 3  APRTIHFTTVLHILHYFKGTLGHGLQFSSQSSLVLYDYSNTDWARDHIDRHSTIGYC 60
          A RT     V  +LHY KGT+G GL +S+ S L L  ++++DWA     R S  G+C
Sbjct: 23 ASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVTGFC 79

The following BLAST results are available for this feature:

BLAST of Cmc05g0129321 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032009.1	6.6e-107	100.00	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK16830.1 putative m...	[more]
XP_031743962.1	5.8e-79	79.79	uncharacterized protein LOC116404739 [Cucumis sativus]	[more]
XP_031741718.1	6.4e-78	79.79	uncharacterized protein LOC116403914 [Cucumis sativus]	[more]
XP_031742303.1	2.4e-77	79.27	uncharacterized protein LOC116404150 [Cucumis sativus]	[more]
KAA0037745.1	3.2e-77	78.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc05g0129321 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.4e-27	37.63	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.2e-26	37.11	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	8.5e-25	38.42	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	6.3e-20	34.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92519	8.0e-15	42.86	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc05g0129321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZP2	3.2e-107	100.00	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7VIT8	1.5e-77	78.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7T8F2	1.5e-77	78.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7U2E5	2.6e-77	78.24	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3E4B0	2.6e-77	78.76	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Cmc05g0129321 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	6.2e-31	47.92	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	5.7e-16	42.86	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	1.4e-06	42.11	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF336	SUBFAMILY NOT NAMED	coord: 65..140
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 65..140
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 40..176 e-value: 3.04148E-62 score: 187.676
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 56..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0129321.1	Cmc05g0129321.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding