Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAGGGAGGGGGTGGAAATTGAGAAATTAGCGGTCGTCTTGGTCACACCTCCGAAGTTTTTTGGGGGAAACAAATTGGAAGCAGTGAACATCGTCGGAGGGGTAAATGCGACACATTCAGCAGCCATCGCAGGGCCAAACTGCGACGGTCAGCCCTAACACTCACTCTCCCTCCTCTGCCGACGACGCTCCTCCCAAGCAGGTTGCTCTCGCCATGGACAGACTCGGCCACGCCGCTCGTCTTATCGCCGACATCAGACTCGGCGCTGATCGCCTTCTCGAAGCCCTATGCGTTACTGCTCAGCCTCATCAAAGCTCTAAGCCTCTCCATTTGTTTCAGAAAGAAGACGCTTCCATGCGCCAACACCTCCTCGACCTTCGTGCAGTTGGTATTTTGCATCACTTCCTTTTTTTTTTTTTTTTTCTTTTAGGGTTACGACTAAGATCACGCTAGATTTTAATTGTTTACTTCTGATTTTGTTAGGAAAGCAGCTTGAAGAGTCTGGTGTTCTCAGTGAATCTCTTCTTTCGAGAAGTAATTCTTGGGGTCTACATATGCCTTTAGTGTGTCCTGATGGCGCTGTGGTTGCTTATGCTTGGAAACGTCAACTAGCTGGCCAGGCTGGTGCATCTGCAGTTGACCGAACCAGGTTAGTCTAGACAGCAAAATAGCTGCCCTGGGGCAGGAATTTTGAAGAACTACTTGAAATTTGGAAGTTTACTCGACATTTCTTCATATTGCTTAGTGGTAATTTGGACTCGATCGGCTATGTGATCAGATTTATGATATTAATAAATTCCCAAATAATTTGATCAAGTATTTTGCATATATGTAGTAGGTAAGTTCCCATCCATTGACAGATAGTGAAGGATCGGAGGTTATAGCTGCTTTGGGGTTTATCGGGAATTTTTAGATTGGCTAGAGAAGAAGGGATTATCGTTTTTTTTGGCCCCCCAATCGTTTATCCCAAAGCCCCTTCATTTTCCTCTCTTTGGAAAGTTGGAATTCCATAGAGTAAAAGTTTTTGCCTGACAGAGTTTGCATGACAAAGTTAACACTTTGCATCACGTTCAGACACATTCTTAGTCGCGTCTTGATCCTCAGTGGCACATCTTGTGCAGAGGAGCTCTGGAGGATGTTGATCATTTGTTTTGGAGTTGCCAGTTTGTGCAATTGATTTGGAGCTGTTTTTGGACTCTTTGAGACTTCTGTCGTTTGTGATAGGGCATGCAGCGCCATGATGGAGGTGGTTGTGTTCCCTCCCTTCAAGAGTATAGGTTCTACAACTGTGTCCCTGAGTTCTAAGGATAAAGAAAAAGTTACTTGGCAACTTTTTCTCCCTAAATCTTGTGGGTCGTTTGGCTTGAAAAAAAAAACCTTTGAGGTTTTGGTCGGTCTTGGCATGTTTTTTGGGAGAATACTAGGTTGTTTAATACTTGCGATGGCCTCTAAGGTCTTTTGTCATTATCCAGTTAGGTGTTATTCTTTTGGATTGGAGACCTTATTTATTTCTTTTTGTAGGTTGGGCCTGTTCTCGTGTGGGCGGTCTTTACGTATGCCCTTTGTATCTCCTTTCATGTTTCTCAATAAAAGCTCTATGTTTTATAACATATAAAAATCAAACAATAACAAGAAGAAGAATCCAAGTTGTTAGATGAATAAATGCCTTGTGGAAATGATGTTTCATAGTTAACTGGTTACCATTAGGTTATGGCCTGTGTCAAACAACATATTTTGTTCACCTACAAAGGATTTTAATATTGAACATATCTTCTAACATAGAGCGATGAAGTTATTTAATGAATTGACCTTGAATATGTTTTTGCTTCTACTTTACCGTAGGACAGTTTGAGTTGTTCTTGAAATTTTTATACGATAGACAAAATCATTTGATTTTTAATCTGACTTCCATAAGTTCACATGAGTGTTTTACTGATGCTTTGCTTGTTAATAGGTTAGCTTTAAAGGCCTTCACTGACCAAAAAAGACGGTTTTTCCCTCATCTTGAAGATGAAAATGCGTCAAATAATGAGCCTGCTTTGAAGAAGCCTTGTTTTTCTCATGGAGTGACAGATGTCAAACAAAATGAGCTTATTGATTCTAGATCACTCTCGGATATTTTATCCTGTGTGGAAAAGGAAGTGCCAGAGCTTAAGATTTTCACTTATGAGCGATTGGACTGGTTAAAACAAGCTTCAGCCCTTCCCTCTCAAGCAAATGAGAATTCAATAGGAGCATTGAAAGAACATAGCTATCATAGTCCTAGGATGAGCCCTGGAGCACTTGGGGCTACTCCTGCAGATAAAGCTGGTGTGATTGAGTTGATTATTCCTTCGGTCTTTAGAGCCGTAGTATCTCTGCATCCAGTTGGTTCTGTTGAACCAGATGCTCTCGCTTTCTTTTCTCCTGATGAGGTACTCTATTTTCCGCATAAGCATTCATTTTCAAAATATTTCGCTCATTAGTCTGTTGTACATACAACAAGAAAATTCTCCAATAAATGGTGTTATTGCCTGATATGGGGTATCTTACCTCCCAGTTGCATGGTCTAAAGATACGCAACCAGTTGATTTATGAAATAGTTGGCGTGAATCCATGGTACTGTGCCATAATTTTTAACGACCTATATTAAGTTCTATTTATATCATTCGCGCACACACACACATATATAATTCAAAACCACATTTTTTAATATTATTGTATTGTTCATCATTTTATTTTAACGGATCTGAGACTAAGCAGACTTGGTGTTTGTTCATTACAAATGCAATTAGACTTCTTAGTTTATTTTTCTAAAATTATTATCTCTACTTGAAGCCTCCACCTGGTTCCATTCATTGTGGCCTTTTTCCCACTGATTTTCGTTGTATCTTACTTCAGTATTTAAGTTGGTAAATGTTGCAATTTTTTTAGAACTTTTTGTGTTTCAACAGAGAGGCAGCCATGTACATGCCAGGGGTTTTTCAAATTATCATGTGTTCAGACATGTTACGGTACCTATCGCTTTGCTCATAATGTTCGCTTTCATTCACATTTATGGAGGTTGCCTTCTCTCAGAGATGATAATTTCATTTTATCTTGATGCAGGAGCATGCTGCCACGGTGCTGCAGTATTTTCTTGGAAATCAACCAAAAGCAGCTCTTTATCCTCTATTGGTAAAACATCACTCATTGAAATTGTACCTTGAGATATTCTTTCTCCTTCCCATTTAAAATCCTCGTCAATTAATTTGTGGTGCTTTCTTGTAGCTTTGGATCTGCAGCTACCAAAATTTGTTTTCAAAAGCTTGTAGGTGAGTCTAAGGGTTTTTAGTGCTTCCACATCTGGTTTTGTATGGATTTGACATTTACCATTGTGTGTTATCTGATCTTGCAGTAAATGTGGACGGCGGCTATCAGTAAACAAACAATCCGATTTATTGTTACCTCCTGTAGTTCGGCCGTACAAACAGTTTTGTGCATCAAAAAACTCATCAGCTGTGCCCATAACCTCACTGAAAGACCAGAAGCTGGATTCTGTTCAAGCTTTCCACATTGATTGTTTCTCAGAAGAAATATAGTCACACATAGCGGTACAGGTACAGTTGGAATAAACCACACAAGTTCCTTTCCAGACTCTTCTGCTCTGTTGGAATGCTTTAAATTTATCATCTCAGGCTCCTGATAACCGAGCATGGAGTGTCATATATTACTTTTTTGTTTATTGATTCTGTTTCTGTATTAGCATGTTTCTTGTCTTTCACCTGAACTGAACCTTGTTTTTCTCAACTTCACTTGTCTAATTGTTAGTTATAATTCGTTTCAGGGCCTCCTGGACTCTGATTCAAATGTTATACGGCAATATCCCCAGAATCAGAGGATGGGCCCTGGCTGCTATGCTATCTTGTGCTGCTTTTGGTGGATGCAATTACATGCACGGAATGATATTCACATTCAGATTATTCATAGGAGCTGATCGTGATTTCGAAAATGACCACCTGTTACTGATGCGGTTATTTTTGTTGGCTCAAGTAGCTTGCCATCATCAAGGCAGGCAAAAGGTACATCCATTTGCTTTTGATATGAGCAATTGCTATTTTTTTTCTCAATCTGCTCAGAAGATAGCTTTGGATTTTGGAATTATTTTGTATCTTTCTTTCCACCTCAGATACAAGAAAAGGATGTTAGCCTTTCGTTAGTAAGAGGTGAGCGTGCGTATGTACAATACTCTAAAGTTTGGATCAGCAGAAGAGCGAAAAACTATAGTAAACGTTTCAACCTCAAGCGTAGATATAGTTATGGAAAACATTTTGCTGTGTTATTAATTATTCTTGAAAGTTGAATATTGAATAATAGTTGGATGTATGATGTATACTTCGTAATTTCTTATGAAAAATTAATTGGTTGGGGTTCTGACGAATGAACAAGAACTAAACCGAAAACAAACATCCTAAAATATTGGAATATATGGATATGG
mRNA sequence
GAAAAGGGAGGGGGTGGAAATTGAGAAATTAGCGGTCGTCTTGGTCACACCTCCGAAGTTTTTTGGGGGAAACAAATTGGAAGCAGTGAACATCGTCGGAGGGGTAAATGCGACACATTCAGCAGCCATCGCAGGGCCAAACTGCGACGGTCAGCCCTAACACTCACTCTCCCTCCTCTGCCGACGACGCTCCTCCCAAGCAGGTTGCTCTCGCCATGGACAGACTCGGCCACGCCGCTCGTCTTATCGCCGACATCAGACTCGGCGCTGATCGCCTTCTCGAAGCCCTATGCGTTACTGCTCAGCCTCATCAAAGCTCTAAGCCTCTCCATTTGTTTCAGAAAGAAGACGCTTCCATGCGCCAACACCTCCTCGACCTTCGTGCAGTTGGAAAGCAGCTTGAAGAGTCTGGTGTTCTCAGTGAATCTCTTCTTTCGAGAAGTAATTCTTGGGGTCTACATATGCCTTTAGTGTGTCCTGATGGCGCTGTGGTTGCTTATGCTTGGAAACGTCAACTAGCTGGCCAGGCTGGTGCATCTGCAGTTGACCGAACCAGGTTAGCTTTAAAGGCCTTCACTGACCAAAAAAGACGGTTTTTCCCTCATCTTGAAGATGAAAATGCGTCAAATAATGAGCCTGCTTTGAAGAAGCCTTGTTTTTCTCATGGAGTGACAGATGTCAAACAAAATGAGCTTATTGATTCTAGATCACTCTCGGATATTTTATCCTGTGTGGAAAAGGAAGTGCCAGAGCTTAAGATTTTCACTTATGAGCGATTGGACTGGTTAAAACAAGCTTCAGCCCTTCCCTCTCAAGCAAATGAGAATTCAATAGGAGCATTGAAAGAACATAGCTATCATAGTCCTAGGATGAGCCCTGGAGCACTTGGGGCTACTCCTGCAGATAAAGCTGGTGTGATTGAGTTGATTATTCCTTCGGTCTTTAGAGCCGTAGTATCTCTGCATCCAGTTGGTTCTGTTGAACCAGATGCTCTCGCTTTCTTTTCTCCTGATGAGAGAGGCAGCCATGTACATGCCAGGGGTTTTTCAAATTATCATGTGTTCAGACATGTTACGGAGCATGCTGCCACGGTGCTGCAGTATTTTCTTGGAAATCAACCAAAAGCAGCTCTTTATCCTCTATTGCTTTGGATCTGCAGCTACCAAAATTTGTTTTCAAAAGCTTGTAGTAAATGTGGACGGCGGCTATCAGTAAACAAACAATCCGATTTATTGTTACCTCCTGTAGTTCGGCCGTACAAACAGTTTTGTGCATCAAAAAACTCATCAGCTGTGCCCATAACCTCACTGAAAGACCAGAAGCTGGATTCTGTTCAAGCTTTCCACATTGATTGTTTCTCAGAAGAAATATAGTCACACATAGCGGTACAGGGCCTCCTGGACTCTGATTCAAATGTTATACGGCAATATCCCCAGAATCAGAGGATGGGCCCTGGCTGCTATGCTATCTTGTGCTGCTTTTGGTGGATGCAATTACATGCACGGAATGATATTCACATTCAGATTATTCATAGGAGCTGATCGTGATTTCGAAAATGACCACCTGTTACTGATGCGGTTATTTTTGTTGGCTCAAGTAGCTTGCCATCATCAAGGCAGGCAAAAGATACAAGAAAAGGATGTTAGCCTTTCGTTAGTAAGAGGTGAGCGTGCGTATGTACAATACTCTAAAGTTTGGATCAGCAGAAGAGCGAAAAACTATAGTAAACGTTTCAACCTCAAGCGTAGATATAGTTATGGAAAACATTTTGCTGTGTTATTAATTATTCTTGAAAGTTGAATATTGAATAATAGTTGGATGTATGATGTATACTTCGTAATTTCTTATGAAAAATTAATTGGTTGGGGTTCTGACGAATGAACAAGAACTAAACCGAAAACAAACATCCTAAAATATTGGAATATATGGATATGG
Coding sequence (CDS)
ATGCGACACATTCAGCAGCCATCGCAGGGCCAAACTGCGACGGTCAGCCCTAACACTCACTCTCCCTCCTCTGCCGACGACGCTCCTCCCAAGCAGGTTGCTCTCGCCATGGACAGACTCGGCCACGCCGCTCGTCTTATCGCCGACATCAGACTCGGCGCTGATCGCCTTCTCGAAGCCCTATGCGTTACTGCTCAGCCTCATCAAAGCTCTAAGCCTCTCCATTTGTTTCAGAAAGAAGACGCTTCCATGCGCCAACACCTCCTCGACCTTCGTGCAGTTGGAAAGCAGCTTGAAGAGTCTGGTGTTCTCAGTGAATCTCTTCTTTCGAGAAGTAATTCTTGGGGTCTACATATGCCTTTAGTGTGTCCTGATGGCGCTGTGGTTGCTTATGCTTGGAAACGTCAACTAGCTGGCCAGGCTGGTGCATCTGCAGTTGACCGAACCAGGTTAGCTTTAAAGGCCTTCACTGACCAAAAAAGACGGTTTTTCCCTCATCTTGAAGATGAAAATGCGTCAAATAATGAGCCTGCTTTGAAGAAGCCTTGTTTTTCTCATGGAGTGACAGATGTCAAACAAAATGAGCTTATTGATTCTAGATCACTCTCGGATATTTTATCCTGTGTGGAAAAGGAAGTGCCAGAGCTTAAGATTTTCACTTATGAGCGATTGGACTGGTTAAAACAAGCTTCAGCCCTTCCCTCTCAAGCAAATGAGAATTCAATAGGAGCATTGAAAGAACATAGCTATCATAGTCCTAGGATGAGCCCTGGAGCACTTGGGGCTACTCCTGCAGATAAAGCTGGTGTGATTGAGTTGATTATTCCTTCGGTCTTTAGAGCCGTAGTATCTCTGCATCCAGTTGGTTCTGTTGAACCAGATGCTCTCGCTTTCTTTTCTCCTGATGAGAGAGGCAGCCATGTACATGCCAGGGGTTTTTCAAATTATCATGTGTTCAGACATGTTACGGAGCATGCTGCCACGGTGCTGCAGTATTTTCTTGGAAATCAACCAAAAGCAGCTCTTTATCCTCTATTGCTTTGGATCTGCAGCTACCAAAATTTGTTTTCAAAAGCTTGTAGTAAATGTGGACGGCGGCTATCAGTAAACAAACAATCCGATTTATTGTTACCTCCTGTAGTTCGGCCGTACAAACAGTTTTGTGCATCAAAAAACTCATCAGCTGTGCCCATAACCTCACTGAAAGACCAGAAGCTGGATTCTGTTCAAGCTTTCCACATTGATTGTTTCTCAGAAGAAATATAG
Protein sequence
MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEEI
Homology
BLAST of Cmc04g0115771 vs. NCBI nr
Match:
XP_008442914.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Cucumis melo])
HSP 1 Score: 837.4 bits (2162), Expect = 5.4e-239
Identity = 420/421 (99.76%), Postives = 421/421 (100.00%), Query Frame = 0
Query: 1 MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA
Sbjct: 1 MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
Query: 61 LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP
Sbjct: 61 LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
Query: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK
Sbjct: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
Query: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN 240
KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN
Sbjct: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN 240
Query: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300
SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHP+GSVEPDALAFFS
Sbjct: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPIGSVEPDALAFFS 300
Query: 301 PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC
Sbjct: 301 PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
Query: 361 SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE 420
SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE
Sbjct: 361 SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE 420
Query: 421 I 422
I
Sbjct: 421 I 421
BLAST of Cmc04g0115771 vs. NCBI nr
Match:
XP_004136512.1 (mediator of RNA polymerase II transcription subunit 27 isoform X1 [Cucumis sativus])
HSP 1 Score: 826.6 bits (2134), Expect = 9.5e-236
Identity = 414/421 (98.34%), Postives = 417/421 (99.05%), Query Frame = 0
Query: 1 MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
MRHIQQPSQGQTATVSP+THSP S DDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA
Sbjct: 1 MRHIQQPSQGQTATVSPSTHSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
Query: 61 LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP
Sbjct: 61 LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
Query: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK
Sbjct: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
Query: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN 240
KPCFSHGVTDVKQNELIDSRSLSDILSC+EKEVPELKIFTYERLDWLKQASALPSQANEN
Sbjct: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANEN 240
Query: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300
SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
Sbjct: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300
Query: 301 PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
PDERGSHVHARGFSNYH+FRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC
Sbjct: 301 PDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
Query: 361 SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE 420
SKCGRRLSVNKQSDLLLPP VRPYKQFCASKNSS VPITSLKDQKLDSVQAFHIDCFSEE
Sbjct: 361 SKCGRRLSVNKQSDLLLPPAVRPYKQFCASKNSSVVPITSLKDQKLDSVQAFHIDCFSEE 420
Query: 421 I 422
I
Sbjct: 421 I 421
BLAST of Cmc04g0115771 vs. NCBI nr
Match:
XP_038904949.1 (mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida] >XP_038904950.1 mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida] >XP_038904951.1 mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida] >XP_038904952.1 mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida])
HSP 1 Score: 793.5 bits (2048), Expect = 8.9e-226
Identity = 397/424 (93.63%), Postives = 411/424 (96.93%), Query Frame = 0
Query: 1 MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
MR QQP+QGQTATVSPNT HSP+SADDAPPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1 MRQTQQPAQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
Query: 61 LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
LEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61 LEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180
HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEN SNNEP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEP 180
Query: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQA 240
ALKKPCFSHGVTDVKQNEL DSRSLS+IL+C+EKEVPELKIFTYERLDWLKQASALPSQA
Sbjct: 181 ALKKPCFSHGVTDVKQNELNDSRSLSEILTCMEKEVPELKIFTYERLDWLKQASALPSQA 240
Query: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA 300
NENSIG LKEHSYHSPRMSPG+LGATP DKAGVIEL+IPSVFRAVVSLHPVGSVEPDA+A
Sbjct: 241 NENSIGVLKEHSYHSPRMSPGSLGATPVDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA 300
Query: 301 FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360
FFSPDERGSHVHARGFSN+H+FRHVTEHAATVLQYFLGNQ KAALYPLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGNQAKAALYPLLLWICSYQNLFS 360
Query: 361 KACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCF 420
KACSKCG+ LSVNKQSDLLLPP VRPYKQFCASKNSS+VPITSLKDQKLDSVQAFHIDCF
Sbjct: 361 KACSKCGQLLSVNKQSDLLLPPAVRPYKQFCASKNSSSVPITSLKDQKLDSVQAFHIDCF 420
Query: 421 SEEI 422
S E+
Sbjct: 421 SGEL 424
BLAST of Cmc04g0115771 vs. NCBI nr
Match:
XP_022940393.1 (mediator of RNA polymerase II transcription subunit 27 [Cucurbita moschata])
HSP 1 Score: 741.9 bits (1914), Expect = 3.1e-210
Identity = 374/422 (88.63%), Postives = 393/422 (93.13%), Query Frame = 0
Query: 1 MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
MR Q P+QG TATVSP T HS SA++APPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1 MRQTQLPAQGLTATVSPTTVLRHSSGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRL 60
Query: 61 LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
LEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61 LEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180
HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++EN SN EP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDEENGSNMEP 180
Query: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQA 240
A KKPCFSHGVTDVKQ EL DS SLSDIL+C+EKEVP+LKIFTYERLDWLKQASALPSQA
Sbjct: 181 AQKKPCFSHGVTDVKQEELNDSSSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQA 240
Query: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA 300
NENSIGALKEH+YHSPRMSP +L AT DKA VIELIIPSVFRAVVSLHPVGSVEPDA+A
Sbjct: 241 NENSIGALKEHNYHSPRMSPRSLDATSTDKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA 300
Query: 301 FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360
FFSPDERGSHVHARGFSN+H+FRHVTEHAATVLQYF+G Q KAAL+PLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFIGIQAKAALHPLLLWICSYQNLFS 360
Query: 361 KACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCF 420
KACSKCGR LSVNKQSDLLLPP +RPYKQFC SK SS VP+TSLKDQKLDSVQAFHI CF
Sbjct: 361 KACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSKISSVVPVTSLKDQKLDSVQAFHIGCF 420
BLAST of Cmc04g0115771 vs. NCBI nr
Match:
XP_023539656.1 (mediator of RNA polymerase II transcription subunit 27 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 741.5 bits (1913), Expect = 4.0e-210
Identity = 375/422 (88.86%), Postives = 393/422 (93.13%), Query Frame = 0
Query: 1 MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
MR Q P+QG TATVSP T HS SA++APPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1 MRQTQLPAQGLTATVSPTTVLRHSSGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRL 60
Query: 61 LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
LEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61 LEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180
HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DEN SN EP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEP 180
Query: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQA 240
A KKPCFSHGVTDVKQ EL DS SLSDIL+C+EKEVP+LKIFTYERLDWLKQASAL SQA
Sbjct: 181 AQKKPCFSHGVTDVKQEELNDSSSLSDILTCLEKEVPDLKIFTYERLDWLKQASALSSQA 240
Query: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA 300
NENSIGALKEH+YHSPRMSP +L AT DKA VIELIIPSVFRAVVSLHPVGSVEPDA+A
Sbjct: 241 NENSIGALKEHNYHSPRMSPRSLDATSTDKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA 300
Query: 301 FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360
FFSPDERGSHVHARGFSN+H+FRHVTEHAATVLQYF+G Q KAAL+PLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFIGIQAKAALHPLLLWICSYQNLFS 360
Query: 361 KACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCF 420
KACSKCGR LSVNKQSDLLLPP +RPYKQFC SK SSAVP+TSLKDQKLDSVQAFHI CF
Sbjct: 361 KACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSKISSAVPVTSLKDQKLDSVQAFHIGCF 420
BLAST of Cmc04g0115771 vs. ExPASy Swiss-Prot
Match:
Q8RWM3 (Mediator of RNA polymerase II transcription subunit 27 OS=Arabidopsis thaliana OX=3702 GN=MED27 PE=1 SV=1)
HSP 1 Score: 446.8 bits (1148), Expect = 2.7e-124
Identity = 240/420 (57.14%), Postives = 301/420 (71.67%), Query Frame = 0
Query: 1 MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
M+ + Q Q + N S S DAPPKQVA AM+RL AAR+IADIRLGADR+LEA
Sbjct: 1 MQTLHQSQLLQNPAEAANNQSES---DAPPKQVAQAMERLNQAARVIADIRLGADRILEA 60
Query: 61 LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
+ V +QP + PL LF +EDASMRQHL DLR +GK+LEESGVL+ESL SRSNSWGLHMP
Sbjct: 61 MFVASQPRHTDMPLQLFLREDASMRQHLQDLRLIGKKLEESGVLTESLRSRSNSWGLHMP 120
Query: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPH++D EP+ K
Sbjct: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHIDD--GLKMEPSSK 180
Query: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN 240
K SH + + + E +D ++L DI S +EK VP +K+ TY RL+WLK+A++LP +++
Sbjct: 181 KHRASHLLLENGREEPVDYKTLPDIQSRLEKLVPSVKVSTYGRLNWLKRANSLPGSGSDD 240
Query: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300
A K S ++ G L DK VIEL PS+FRA+VSL P GSV+PDA+AFFS
Sbjct: 241 PTEASKPIFQSSSKLRSG-LQTEVVDKIAVIELSFPSLFRAIVSLSPAGSVDPDAVAFFS 300
Query: 301 PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
PDE GS++HARGFS YHV++H+TEHAAT LQYFLG ALY LLLWICS++++FSK C
Sbjct: 301 PDEGGSYLHARGFSVYHVYKHITEHAATALQYFLGFGTGTALYSLLLWICSFESVFSKPC 360
Query: 361 SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE 420
+KCGR L+++K+S L+LPP+ R Y++ + N LD +A+H C ++
Sbjct: 361 TKCGRLLAMDKKSALILPPLHRAYQELPLALN-------------LDVCEAYHSSCSQDD 401
BLAST of Cmc04g0115771 vs. ExPASy TrEMBL
Match:
A0A1S3B7L6 (mediator of RNA polymerase II transcription subunit 27 OS=Cucumis melo OX=3656 GN=LOC103486676 PE=3 SV=1)
HSP 1 Score: 837.4 bits (2162), Expect = 2.6e-239
Identity = 420/421 (99.76%), Postives = 421/421 (100.00%), Query Frame = 0
Query: 1 MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA
Sbjct: 1 MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
Query: 61 LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP
Sbjct: 61 LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
Query: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK
Sbjct: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
Query: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN 240
KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN
Sbjct: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN 240
Query: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300
SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHP+GSVEPDALAFFS
Sbjct: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPIGSVEPDALAFFS 300
Query: 301 PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC
Sbjct: 301 PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
Query: 361 SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE 420
SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE
Sbjct: 361 SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE 420
Query: 421 I 422
I
Sbjct: 421 I 421
BLAST of Cmc04g0115771 vs. ExPASy TrEMBL
Match:
A0A0A0LGT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G781560 PE=3 SV=1)
HSP 1 Score: 826.6 bits (2134), Expect = 4.6e-236
Identity = 414/421 (98.34%), Postives = 417/421 (99.05%), Query Frame = 0
Query: 1 MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
MRHIQQPSQGQTATVSP+THSP S DDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA
Sbjct: 1 MRHIQQPSQGQTATVSPSTHSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
Query: 61 LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP
Sbjct: 61 LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
Query: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK
Sbjct: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
Query: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN 240
KPCFSHGVTDVKQNELIDSRSLSDILSC+EKEVPELKIFTYERLDWLKQASALPSQANEN
Sbjct: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANEN 240
Query: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300
SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
Sbjct: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300
Query: 301 PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
PDERGSHVHARGFSNYH+FRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC
Sbjct: 301 PDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
Query: 361 SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE 420
SKCGRRLSVNKQSDLLLPP VRPYKQFCASKNSS VPITSLKDQKLDSVQAFHIDCFSEE
Sbjct: 361 SKCGRRLSVNKQSDLLLPPAVRPYKQFCASKNSSVVPITSLKDQKLDSVQAFHIDCFSEE 420
Query: 421 I 422
I
Sbjct: 421 I 421
BLAST of Cmc04g0115771 vs. ExPASy TrEMBL
Match:
A0A6J1FP59 (mediator of RNA polymerase II transcription subunit 27 OS=Cucurbita moschata OX=3662 GN=LOC111446014 PE=3 SV=1)
HSP 1 Score: 741.9 bits (1914), Expect = 1.5e-210
Identity = 374/422 (88.63%), Postives = 393/422 (93.13%), Query Frame = 0
Query: 1 MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
MR Q P+QG TATVSP T HS SA++APPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1 MRQTQLPAQGLTATVSPTTVLRHSSGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRL 60
Query: 61 LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
LEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61 LEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180
HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++EN SN EP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDEENGSNMEP 180
Query: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQA 240
A KKPCFSHGVTDVKQ EL DS SLSDIL+C+EKEVP+LKIFTYERLDWLKQASALPSQA
Sbjct: 181 AQKKPCFSHGVTDVKQEELNDSSSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQA 240
Query: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA 300
NENSIGALKEH+YHSPRMSP +L AT DKA VIELIIPSVFRAVVSLHPVGSVEPDA+A
Sbjct: 241 NENSIGALKEHNYHSPRMSPRSLDATSTDKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA 300
Query: 301 FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360
FFSPDERGSHVHARGFSN+H+FRHVTEHAATVLQYF+G Q KAAL+PLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFIGIQAKAALHPLLLWICSYQNLFS 360
Query: 361 KACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCF 420
KACSKCGR LSVNKQSDLLLPP +RPYKQFC SK SS VP+TSLKDQKLDSVQAFHI CF
Sbjct: 361 KACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSKISSVVPVTSLKDQKLDSVQAFHIGCF 420
BLAST of Cmc04g0115771 vs. ExPASy TrEMBL
Match:
A0A6J1KZZ9 (mediator of RNA polymerase II transcription subunit 27 OS=Cucurbita maxima OX=3661 GN=LOC111498620 PE=3 SV=1)
HSP 1 Score: 740.3 bits (1910), Expect = 4.3e-210
Identity = 373/422 (88.39%), Postives = 392/422 (92.89%), Query Frame = 0
Query: 1 MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
MR Q P+QG TATVSP T HS SA++APPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1 MRQTQLPAQGLTATVSPTTVLRHSSGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRL 60
Query: 61 LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
LEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61 LEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180
HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++EN SN EP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDEENGSNMEP 180
Query: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQA 240
A KKPCFSHGVTDVKQ EL DS SLSDIL+C+EKEVP+LKIFTYERLDWLKQAS LPSQA
Sbjct: 181 AQKKPCFSHGVTDVKQEELNDSSSLSDILTCMEKEVPDLKIFTYERLDWLKQASVLPSQA 240
Query: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA 300
NENSIG LKEH+YHSPRMSP +L AT DKA VIELIIPSVFRAVVSLHPVGSVEPDA+A
Sbjct: 241 NENSIGTLKEHNYHSPRMSPRSLDATSTDKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA 300
Query: 301 FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360
FFSPDERGSHVHARGFSN+H+FRHVTEHAATVLQYF+G Q KAAL+PLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFIGIQAKAALHPLLLWICSYQNLFS 360
Query: 361 KACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCF 420
KACSKCGR LSVNKQSDLLLPP +RPYKQFC SK SSAVP+TSLKDQKLDSVQAFHI CF
Sbjct: 361 KACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSKISSAVPVTSLKDQKLDSVQAFHIGCF 420
BLAST of Cmc04g0115771 vs. ExPASy TrEMBL
Match:
A0A6J1DC62 (mediator of RNA polymerase II transcription subunit 27 OS=Momordica charantia OX=3673 GN=LOC111019372 PE=3 SV=1)
HSP 1 Score: 721.1 bits (1860), Expect = 2.7e-204
Identity = 362/424 (85.38%), Postives = 390/424 (91.98%), Query Frame = 0
Query: 1 MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
MR QQP+QGQTATVSPNT HS SA++APPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1 MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRL 60
Query: 61 LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
LEALCVTA PHQS+KPLHLFQKED SMRQHL DLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61 LEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQLEESGVLSESLLSRSNSWGL 120
Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180
HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DE+ N EP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEP 180
Query: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQA 240
ALKKPCFSHGVT++KQ+EL + R+LSDIL+C+EKEVP+LKIFTYERLDWLKQA AL SQA
Sbjct: 181 ALKKPCFSHGVTEIKQDELNEPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQA 240
Query: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA 300
N+NSIGALKEH+YHSPRM PG+L A+ DK VIELIIPSVFRAVVSLHPVGSVEPDA+A
Sbjct: 241 NDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA 300
Query: 301 FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360
FF+PDERGS+VHARGFS +H+FRHVTEHAATVLQYFLG Q KAALYPLLLWICSYQNLFS
Sbjct: 301 FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFS 360
Query: 361 KACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCF 420
KACSKCGR LSVNKQSDLLLPP +RPYKQFC S+ SAVPI+SLKDQ+ D VQAFHI CF
Sbjct: 361 KACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVPISSLKDQRSDPVQAFHIGCF 420
Query: 421 SEEI 422
SEE+
Sbjct: 421 SEEL 424
BLAST of Cmc04g0115771 vs. TAIR 10
Match:
AT3G09180.1 (CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )
HSP 1 Score: 446.8 bits (1148), Expect = 1.9e-125
Identity = 240/420 (57.14%), Postives = 301/420 (71.67%), Query Frame = 0
Query: 1 MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
M+ + Q Q + N S S DAPPKQVA AM+RL AAR+IADIRLGADR+LEA
Sbjct: 1 MQTLHQSQLLQNPAEAANNQSES---DAPPKQVAQAMERLNQAARVIADIRLGADRILEA 60
Query: 61 LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
+ V +QP + PL LF +EDASMRQHL DLR +GK+LEESGVL+ESL SRSNSWGLHMP
Sbjct: 61 MFVASQPRHTDMPLQLFLREDASMRQHLQDLRLIGKKLEESGVLTESLRSRSNSWGLHMP 120
Query: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPH++D EP+ K
Sbjct: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHIDD--GLKMEPSSK 180
Query: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN 240
K SH + + + E +D ++L DI S +EK VP +K+ TY RL+WLK+A++LP +++
Sbjct: 181 KHRASHLLLENGREEPVDYKTLPDIQSRLEKLVPSVKVSTYGRLNWLKRANSLPGSGSDD 240
Query: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300
A K S ++ G L DK VIEL PS+FRA+VSL P GSV+PDA+AFFS
Sbjct: 241 PTEASKPIFQSSSKLRSG-LQTEVVDKIAVIELSFPSLFRAIVSLSPAGSVDPDAVAFFS 300
Query: 301 PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
PDE GS++HARGFS YHV++H+TEHAAT LQYFLG ALY LLLWICS++++FSK C
Sbjct: 301 PDEGGSYLHARGFSVYHVYKHITEHAATALQYFLGFGTGTALYSLLLWICSFESVFSKPC 360
Query: 361 SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE 420
+KCGR L+++K+S L+LPP+ R Y++ + N LD +A+H C ++
Sbjct: 361 TKCGRLLAMDKKSALILPPLHRAYQELPLALN-------------LDVCEAYHSSCSQDD 401
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_008442914.1 | 5.4e-239 | 99.76 | PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Cucumis melo] | [more] |
XP_004136512.1 | 9.5e-236 | 98.34 | mediator of RNA polymerase II transcription subunit 27 isoform X1 [Cucumis sativ... | [more] |
XP_038904949.1 | 8.9e-226 | 93.63 | mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida] >XP_0... | [more] |
XP_022940393.1 | 3.1e-210 | 88.63 | mediator of RNA polymerase II transcription subunit 27 [Cucurbita moschata] | [more] |
XP_023539656.1 | 4.0e-210 | 88.86 | mediator of RNA polymerase II transcription subunit 27 [Cucurbita pepo subsp. pe... | [more] |
Match Name | E-value | Identity | Description | |
Q8RWM3 | 2.7e-124 | 57.14 | Mediator of RNA polymerase II transcription subunit 27 OS=Arabidopsis thaliana O... | [more] |
Match Name | E-value | Identity | Description | |
A0A1S3B7L6 | 2.6e-239 | 99.76 | mediator of RNA polymerase II transcription subunit 27 OS=Cucumis melo OX=3656 G... | [more] |
A0A0A0LGT1 | 4.6e-236 | 98.34 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G781560 PE=3 SV=1 | [more] |
A0A6J1FP59 | 1.5e-210 | 88.63 | mediator of RNA polymerase II transcription subunit 27 OS=Cucurbita moschata OX=... | [more] |
A0A6J1KZZ9 | 4.3e-210 | 88.39 | mediator of RNA polymerase II transcription subunit 27 OS=Cucurbita maxima OX=36... | [more] |
A0A6J1DC62 | 2.7e-204 | 85.38 | mediator of RNA polymerase II transcription subunit 27 OS=Momordica charantia OX... | [more] |
Match Name | E-value | Identity | Description | |
AT3G09180.1 | 1.9e-125 | 57.14 | CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627);... | [more] |