Cmc04g0115771 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0115771
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	mediator of RNA polymerase II transcription subunit 27
Location	CMiso1.1chr04: 33658414 .. 33662871 (-)
RNA-Seq Expression	Cmc04g0115771
Synteny	Cmc04g0115771

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAGGGAGGGGGTGGAAATTGAGAAATTAGCGGTCGTCTTGGTCACACCTCCGAAGTTTTTTGGGGGAAACAAATTGGAAGCAGTGAACATCGTCGGAGGGGTAAATGCGACACATTCAGCAGCCATCGCAGGGCCAAACTGCGACGGTCAGCCCTAACACTCACTCTCCCTCCTCTGCCGACGACGCTCCTCCCAAGCAGGTTGCTCTCGCCATGGACAGACTCGGCCACGCCGCTCGTCTTATCGCCGACATCAGACTCGGCGCTGATCGCCTTCTCGAAGCCCTATGCGTTACTGCTCAGCCTCATCAAAGCTCTAAGCCTCTCCATTTGTTTCAGAAAGAAGACGCTTCCATGCGCCAACACCTCCTCGACCTTCGTGCAGTTGGTATTTTGCATCACTTCCTTTTTTTTTTTTTTTTTCTTTTAGGGTTACGACTAAGATCACGCTAGATTTTAATTGTTTACTTCTGATTTTGTTAGGAAAGCAGCTTGAAGAGTCTGGTGTTCTCAGTGAATCTCTTCTTTCGAGAAGTAATTCTTGGGGTCTACATATGCCTTTAGTGTGTCCTGATGGCGCTGTGGTTGCTTATGCTTGGAAACGTCAACTAGCTGGCCAGGCTGGTGCATCTGCAGTTGACCGAACCAGGTTAGTCTAGACAGCAAAATAGCTGCCCTGGGGCAGGAATTTTGAAGAACTACTTGAAATTTGGAAGTTTACTCGACATTTCTTCATATTGCTTAGTGGTAATTTGGACTCGATCGGCTATGTGATCAGATTTATGATATTAATAAATTCCCAAATAATTTGATCAAGTATTTTGCATATATGTAGTAGGTAAGTTCCCATCCATTGACAGATAGTGAAGGATCGGAGGTTATAGCTGCTTTGGGGTTTATCGGGAATTTTTAGATTGGCTAGAGAAGAAGGGATTATCGTTTTTTTTGGCCCCCCAATCGTTTATCCCAAAGCCCCTTCATTTTCCTCTCTTTGGAAAGTTGGAATTCCATAGAGTAAAAGTTTTTGCCTGACAGAGTTTGCATGACAAAGTTAACACTTTGCATCACGTTCAGACACATTCTTAGTCGCGTCTTGATCCTCAGTGGCACATCTTGTGCAGAGGAGCTCTGGAGGATGTTGATCATTTGTTTTGGAGTTGCCAGTTTGTGCAATTGATTTGGAGCTGTTTTTGGACTCTTTGAGACTTCTGTCGTTTGTGATAGGGCATGCAGCGCCATGATGGAGGTGGTTGTGTTCCCTCCCTTCAAGAGTATAGGTTCTACAACTGTGTCCCTGAGTTCTAAGGATAAAGAAAAAGTTACTTGGCAACTTTTTCTCCCTAAATCTTGTGGGTCGTTTGGCTTGAAAAAAAAAACCTTTGAGGTTTTGGTCGGTCTTGGCATGTTTTTTGGGAGAATACTAGGTTGTTTAATACTTGCGATGGCCTCTAAGGTCTTTTGTCATTATCCAGTTAGGTGTTATTCTTTTGGATTGGAGACCTTATTTATTTCTTTTTGTAGGTTGGGCCTGTTCTCGTGTGGGCGGTCTTTACGTATGCCCTTTGTATCTCCTTTCATGTTTCTCAATAAAAGCTCTATGTTTTATAACATATAAAAATCAAACAATAACAAGAAGAAGAATCCAAGTTGTTAGATGAATAAATGCCTTGTGGAAATGATGTTTCATAGTTAACTGGTTACCATTAGGTTATGGCCTGTGTCAAACAACATATTTTGTTCACCTACAAAGGATTTTAATATTGAACATATCTTCTAACATAGAGCGATGAAGTTATTTAATGAATTGACCTTGAATATGTTTTTGCTTCTACTTTACCGTAGGACAGTTTGAGTTGTTCTTGAAATTTTTATACGATAGACAAAATCATTTGATTTTTAATCTGACTTCCATAAGTTCACATGAGTGTTTTACTGATGCTTTGCTTGTTAATAGGTTAGCTTTAAAGGCCTTCACTGACCAAAAAAGACGGTTTTTCCCTCATCTTGAAGATGAAAATGCGTCAAATAATGAGCCTGCTTTGAAGAAGCCTTGTTTTTCTCATGGAGTGACAGATGTCAAACAAAATGAGCTTATTGATTCTAGATCACTCTCGGATATTTTATCCTGTGTGGAAAAGGAAGTGCCAGAGCTTAAGATTTTCACTTATGAGCGATTGGACTGGTTAAAACAAGCTTCAGCCCTTCCCTCTCAAGCAAATGAGAATTCAATAGGAGCATTGAAAGAACATAGCTATCATAGTCCTAGGATGAGCCCTGGAGCACTTGGGGCTACTCCTGCAGATAAAGCTGGTGTGATTGAGTTGATTATTCCTTCGGTCTTTAGAGCCGTAGTATCTCTGCATCCAGTTGGTTCTGTTGAACCAGATGCTCTCGCTTTCTTTTCTCCTGATGAGGTACTCTATTTTCCGCATAAGCATTCATTTTCAAAATATTTCGCTCATTAGTCTGTTGTACATACAACAAGAAAATTCTCCAATAAATGGTGTTATTGCCTGATATGGGGTATCTTACCTCCCAGTTGCATGGTCTAAAGATACGCAACCAGTTGATTTATGAAATAGTTGGCGTGAATCCATGGTACTGTGCCATAATTTTTAACGACCTATATTAAGTTCTATTTATATCATTCGCGCACACACACACATATATAATTCAAAACCACATTTTTTAATATTATTGTATTGTTCATCATTTTATTTTAACGGATCTGAGACTAAGCAGACTTGGTGTTTGTTCATTACAAATGCAATTAGACTTCTTAGTTTATTTTTCTAAAATTATTATCTCTACTTGAAGCCTCCACCTGGTTCCATTCATTGTGGCCTTTTTCCCACTGATTTTCGTTGTATCTTACTTCAGTATTTAAGTTGGTAAATGTTGCAATTTTTTTAGAACTTTTTGTGTTTCAACAGAGAGGCAGCCATGTACATGCCAGGGGTTTTTCAAATTATCATGTGTTCAGACATGTTACGGTACCTATCGCTTTGCTCATAATGTTCGCTTTCATTCACATTTATGGAGGTTGCCTTCTCTCAGAGATGATAATTTCATTTTATCTTGATGCAGGAGCATGCTGCCACGGTGCTGCAGTATTTTCTTGGAAATCAACCAAAAGCAGCTCTTTATCCTCTATTGGTAAAACATCACTCATTGAAATTGTACCTTGAGATATTCTTTCTCCTTCCCATTTAAAATCCTCGTCAATTAATTTGTGGTGCTTTCTTGTAGCTTTGGATCTGCAGCTACCAAAATTTGTTTTCAAAAGCTTGTAGGTGAGTCTAAGGGTTTTTAGTGCTTCCACATCTGGTTTTGTATGGATTTGACATTTACCATTGTGTGTTATCTGATCTTGCAGTAAATGTGGACGGCGGCTATCAGTAAACAAACAATCCGATTTATTGTTACCTCCTGTAGTTCGGCCGTACAAACAGTTTTGTGCATCAAAAAACTCATCAGCTGTGCCCATAACCTCACTGAAAGACCAGAAGCTGGATTCTGTTCAAGCTTTCCACATTGATTGTTTCTCAGAAGAAATATAGTCACACATAGCGGTACAGGTACAGTTGGAATAAACCACACAAGTTCCTTTCCAGACTCTTCTGCTCTGTTGGAATGCTTTAAATTTATCATCTCAGGCTCCTGATAACCGAGCATGGAGTGTCATATATTACTTTTTTGTTTATTGATTCTGTTTCTGTATTAGCATGTTTCTTGTCTTTCACCTGAACTGAACCTTGTTTTTCTCAACTTCACTTGTCTAATTGTTAGTTATAATTCGTTTCAGGGCCTCCTGGACTCTGATTCAAATGTTATACGGCAATATCCCCAGAATCAGAGGATGGGCCCTGGCTGCTATGCTATCTTGTGCTGCTTTTGGTGGATGCAATTACATGCACGGAATGATATTCACATTCAGATTATTCATAGGAGCTGATCGTGATTTCGAAAATGACCACCTGTTACTGATGCGGTTATTTTTGTTGGCTCAAGTAGCTTGCCATCATCAAGGCAGGCAAAAGGTACATCCATTTGCTTTTGATATGAGCAATTGCTATTTTTTTTCTCAATCTGCTCAGAAGATAGCTTTGGATTTTGGAATTATTTTGTATCTTTCTTTCCACCTCAGATACAAGAAAAGGATGTTAGCCTTTCGTTAGTAAGAGGTGAGCGTGCGTATGTACAATACTCTAAAGTTTGGATCAGCAGAAGAGCGAAAAACTATAGTAAACGTTTCAACCTCAAGCGTAGATATAGTTATGGAAAACATTTTGCTGTGTTATTAATTATTCTTGAAAGTTGAATATTGAATAATAGTTGGATGTATGATGTATACTTCGTAATTTCTTATGAAAAATTAATTGGTTGGGGTTCTGACGAATGAACAAGAACTAAACCGAAAACAAACATCCTAAAATATTGGAATATATGGATATGG

mRNA sequence

GAAAAGGGAGGGGGTGGAAATTGAGAAATTAGCGGTCGTCTTGGTCACACCTCCGAAGTTTTTTGGGGGAAACAAATTGGAAGCAGTGAACATCGTCGGAGGGGTAAATGCGACACATTCAGCAGCCATCGCAGGGCCAAACTGCGACGGTCAGCCCTAACACTCACTCTCCCTCCTCTGCCGACGACGCTCCTCCCAAGCAGGTTGCTCTCGCCATGGACAGACTCGGCCACGCCGCTCGTCTTATCGCCGACATCAGACTCGGCGCTGATCGCCTTCTCGAAGCCCTATGCGTTACTGCTCAGCCTCATCAAAGCTCTAAGCCTCTCCATTTGTTTCAGAAAGAAGACGCTTCCATGCGCCAACACCTCCTCGACCTTCGTGCAGTTGGAAAGCAGCTTGAAGAGTCTGGTGTTCTCAGTGAATCTCTTCTTTCGAGAAGTAATTCTTGGGGTCTACATATGCCTTTAGTGTGTCCTGATGGCGCTGTGGTTGCTTATGCTTGGAAACGTCAACTAGCTGGCCAGGCTGGTGCATCTGCAGTTGACCGAACCAGGTTAGCTTTAAAGGCCTTCACTGACCAAAAAAGACGGTTTTTCCCTCATCTTGAAGATGAAAATGCGTCAAATAATGAGCCTGCTTTGAAGAAGCCTTGTTTTTCTCATGGAGTGACAGATGTCAAACAAAATGAGCTTATTGATTCTAGATCACTCTCGGATATTTTATCCTGTGTGGAAAAGGAAGTGCCAGAGCTTAAGATTTTCACTTATGAGCGATTGGACTGGTTAAAACAAGCTTCAGCCCTTCCCTCTCAAGCAAATGAGAATTCAATAGGAGCATTGAAAGAACATAGCTATCATAGTCCTAGGATGAGCCCTGGAGCACTTGGGGCTACTCCTGCAGATAAAGCTGGTGTGATTGAGTTGATTATTCCTTCGGTCTTTAGAGCCGTAGTATCTCTGCATCCAGTTGGTTCTGTTGAACCAGATGCTCTCGCTTTCTTTTCTCCTGATGAGAGAGGCAGCCATGTACATGCCAGGGGTTTTTCAAATTATCATGTGTTCAGACATGTTACGGAGCATGCTGCCACGGTGCTGCAGTATTTTCTTGGAAATCAACCAAAAGCAGCTCTTTATCCTCTATTGCTTTGGATCTGCAGCTACCAAAATTTGTTTTCAAAAGCTTGTAGTAAATGTGGACGGCGGCTATCAGTAAACAAACAATCCGATTTATTGTTACCTCCTGTAGTTCGGCCGTACAAACAGTTTTGTGCATCAAAAAACTCATCAGCTGTGCCCATAACCTCACTGAAAGACCAGAAGCTGGATTCTGTTCAAGCTTTCCACATTGATTGTTTCTCAGAAGAAATATAGTCACACATAGCGGTACAGGGCCTCCTGGACTCTGATTCAAATGTTATACGGCAATATCCCCAGAATCAGAGGATGGGCCCTGGCTGCTATGCTATCTTGTGCTGCTTTTGGTGGATGCAATTACATGCACGGAATGATATTCACATTCAGATTATTCATAGGAGCTGATCGTGATTTCGAAAATGACCACCTGTTACTGATGCGGTTATTTTTGTTGGCTCAAGTAGCTTGCCATCATCAAGGCAGGCAAAAGATACAAGAAAAGGATGTTAGCCTTTCGTTAGTAAGAGGTGAGCGTGCGTATGTACAATACTCTAAAGTTTGGATCAGCAGAAGAGCGAAAAACTATAGTAAACGTTTCAACCTCAAGCGTAGATATAGTTATGGAAAACATTTTGCTGTGTTATTAATTATTCTTGAAAGTTGAATATTGAATAATAGTTGGATGTATGATGTATACTTCGTAATTTCTTATGAAAAATTAATTGGTTGGGGTTCTGACGAATGAACAAGAACTAAACCGAAAACAAACATCCTAAAATATTGGAATATATGGATATGG

Coding sequence (CDS)

ATGCGACACATTCAGCAGCCATCGCAGGGCCAAACTGCGACGGTCAGCCCTAACACTCACTCTCCCTCCTCTGCCGACGACGCTCCTCCCAAGCAGGTTGCTCTCGCCATGGACAGACTCGGCCACGCCGCTCGTCTTATCGCCGACATCAGACTCGGCGCTGATCGCCTTCTCGAAGCCCTATGCGTTACTGCTCAGCCTCATCAAAGCTCTAAGCCTCTCCATTTGTTTCAGAAAGAAGACGCTTCCATGCGCCAACACCTCCTCGACCTTCGTGCAGTTGGAAAGCAGCTTGAAGAGTCTGGTGTTCTCAGTGAATCTCTTCTTTCGAGAAGTAATTCTTGGGGTCTACATATGCCTTTAGTGTGTCCTGATGGCGCTGTGGTTGCTTATGCTTGGAAACGTCAACTAGCTGGCCAGGCTGGTGCATCTGCAGTTGACCGAACCAGGTTAGCTTTAAAGGCCTTCACTGACCAAAAAAGACGGTTTTTCCCTCATCTTGAAGATGAAAATGCGTCAAATAATGAGCCTGCTTTGAAGAAGCCTTGTTTTTCTCATGGAGTGACAGATGTCAAACAAAATGAGCTTATTGATTCTAGATCACTCTCGGATATTTTATCCTGTGTGGAAAAGGAAGTGCCAGAGCTTAAGATTTTCACTTATGAGCGATTGGACTGGTTAAAACAAGCTTCAGCCCTTCCCTCTCAAGCAAATGAGAATTCAATAGGAGCATTGAAAGAACATAGCTATCATAGTCCTAGGATGAGCCCTGGAGCACTTGGGGCTACTCCTGCAGATAAAGCTGGTGTGATTGAGTTGATTATTCCTTCGGTCTTTAGAGCCGTAGTATCTCTGCATCCAGTTGGTTCTGTTGAACCAGATGCTCTCGCTTTCTTTTCTCCTGATGAGAGAGGCAGCCATGTACATGCCAGGGGTTTTTCAAATTATCATGTGTTCAGACATGTTACGGAGCATGCTGCCACGGTGCTGCAGTATTTTCTTGGAAATCAACCAAAAGCAGCTCTTTATCCTCTATTGCTTTGGATCTGCAGCTACCAAAATTTGTTTTCAAAAGCTTGTAGTAAATGTGGACGGCGGCTATCAGTAAACAAACAATCCGATTTATTGTTACCTCCTGTAGTTCGGCCGTACAAACAGTTTTGTGCATCAAAAAACTCATCAGCTGTGCCCATAACCTCACTGAAAGACCAGAAGCTGGATTCTGTTCAAGCTTTCCACATTGATTGTTTCTCAGAAGAAATATAG

Protein sequence

MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEEI

Homology

[Close]

BLAST of Cmc04g0115771 vs. NCBI nr
Match: XP_008442914.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Cucumis melo])

HSP 1 Score: 837.4 bits (2162), Expect = 5.4e-239
Identity = 420/421 (99.76%), Postives = 421/421 (100.00%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
           MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA
Sbjct: 1   MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60

Query: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
           LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP
Sbjct: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120

Query: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
           LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK
Sbjct: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180

Query: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN 240
           KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN
Sbjct: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN 240

Query: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300
           SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHP+GSVEPDALAFFS
Sbjct: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPIGSVEPDALAFFS 300

Query: 301 PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
           PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC
Sbjct: 301 PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360

Query: 361 SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE 420
           SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE
Sbjct: 361 SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE 420

Query: 421 I 422
           I
Sbjct: 421 I 421

[Close]

BLAST of Cmc04g0115771 vs. NCBI nr
Match: XP_004136512.1 (mediator of RNA polymerase II transcription subunit 27 isoform X1 [Cucumis sativus])

HSP 1 Score: 826.6 bits (2134), Expect = 9.5e-236
Identity = 414/421 (98.34%), Postives = 417/421 (99.05%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
           MRHIQQPSQGQTATVSP+THSP S DDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA
Sbjct: 1   MRHIQQPSQGQTATVSPSTHSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60

Query: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
           LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP
Sbjct: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120

Query: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
           LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK
Sbjct: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180

Query: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN 240
           KPCFSHGVTDVKQNELIDSRSLSDILSC+EKEVPELKIFTYERLDWLKQASALPSQANEN
Sbjct: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANEN 240

Query: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300
           SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
Sbjct: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300

Query: 301 PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
           PDERGSHVHARGFSNYH+FRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC
Sbjct: 301 PDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360

Query: 361 SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE 420
           SKCGRRLSVNKQSDLLLPP VRPYKQFCASKNSS VPITSLKDQKLDSVQAFHIDCFSEE
Sbjct: 361 SKCGRRLSVNKQSDLLLPPAVRPYKQFCASKNSSVVPITSLKDQKLDSVQAFHIDCFSEE 420

Query: 421 I 422
           I
Sbjct: 421 I 421

[Close]

BLAST of Cmc04g0115771 vs. NCBI nr
Match: XP_038904949.1 (mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida] >XP_038904950.1 mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida] >XP_038904951.1 mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida] >XP_038904952.1 mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida])

HSP 1 Score: 793.5 bits (2048), Expect = 8.9e-226
Identity = 397/424 (93.63%), Postives = 411/424 (96.93%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MR  QQP+QGQTATVSPNT   HSP+SADDAPPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRQTQQPAQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEN SNNEP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEP 180

Query: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQA 240
           ALKKPCFSHGVTDVKQNEL DSRSLS+IL+C+EKEVPELKIFTYERLDWLKQASALPSQA
Sbjct: 181 ALKKPCFSHGVTDVKQNELNDSRSLSEILTCMEKEVPELKIFTYERLDWLKQASALPSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA 300
           NENSIG LKEHSYHSPRMSPG+LGATP DKAGVIEL+IPSVFRAVVSLHPVGSVEPDA+A
Sbjct: 241 NENSIGVLKEHSYHSPRMSPGSLGATPVDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA 300

Query: 301 FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360
           FFSPDERGSHVHARGFSN+H+FRHVTEHAATVLQYFLGNQ KAALYPLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGNQAKAALYPLLLWICSYQNLFS 360

Query: 361 KACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCF 420
           KACSKCG+ LSVNKQSDLLLPP VRPYKQFCASKNSS+VPITSLKDQKLDSVQAFHIDCF
Sbjct: 361 KACSKCGQLLSVNKQSDLLLPPAVRPYKQFCASKNSSSVPITSLKDQKLDSVQAFHIDCF 420

Query: 421 SEEI 422
           S E+
Sbjct: 421 SGEL 424

[Close]

BLAST of Cmc04g0115771 vs. NCBI nr
Match: XP_022940393.1 (mediator of RNA polymerase II transcription subunit 27 [Cucurbita moschata])

HSP 1 Score: 741.9 bits (1914), Expect = 3.1e-210
Identity = 374/422 (88.63%), Postives = 393/422 (93.13%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MR  Q P+QG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRQTQLPAQGLTATVSPTTVLRHSSGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++EN SN EP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDEENGSNMEP 180

Query: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQA 240
           A KKPCFSHGVTDVKQ EL DS SLSDIL+C+EKEVP+LKIFTYERLDWLKQASALPSQA
Sbjct: 181 AQKKPCFSHGVTDVKQEELNDSSSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA 300
           NENSIGALKEH+YHSPRMSP +L AT  DKA VIELIIPSVFRAVVSLHPVGSVEPDA+A
Sbjct: 241 NENSIGALKEHNYHSPRMSPRSLDATSTDKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA 300

Query: 301 FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360
           FFSPDERGSHVHARGFSN+H+FRHVTEHAATVLQYF+G Q KAAL+PLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFIGIQAKAALHPLLLWICSYQNLFS 360

Query: 361 KACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCF 420
           KACSKCGR LSVNKQSDLLLPP +RPYKQFC SK SS VP+TSLKDQKLDSVQAFHI CF
Sbjct: 361 KACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSKISSVVPVTSLKDQKLDSVQAFHIGCF 420

[Close]

BLAST of Cmc04g0115771 vs. NCBI nr
Match: XP_023539656.1 (mediator of RNA polymerase II transcription subunit 27 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 741.5 bits (1913), Expect = 4.0e-210
Identity = 375/422 (88.86%), Postives = 393/422 (93.13%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MR  Q P+QG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRQTQLPAQGLTATVSPTTVLRHSSGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DEN SN EP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEP 180

Query: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQA 240
           A KKPCFSHGVTDVKQ EL DS SLSDIL+C+EKEVP+LKIFTYERLDWLKQASAL SQA
Sbjct: 181 AQKKPCFSHGVTDVKQEELNDSSSLSDILTCLEKEVPDLKIFTYERLDWLKQASALSSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA 300
           NENSIGALKEH+YHSPRMSP +L AT  DKA VIELIIPSVFRAVVSLHPVGSVEPDA+A
Sbjct: 241 NENSIGALKEHNYHSPRMSPRSLDATSTDKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA 300

Query: 301 FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360
           FFSPDERGSHVHARGFSN+H+FRHVTEHAATVLQYF+G Q KAAL+PLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFIGIQAKAALHPLLLWICSYQNLFS 360

Query: 361 KACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCF 420
           KACSKCGR LSVNKQSDLLLPP +RPYKQFC SK SSAVP+TSLKDQKLDSVQAFHI CF
Sbjct: 361 KACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSKISSAVPVTSLKDQKLDSVQAFHIGCF 420

[Close]

BLAST of Cmc04g0115771 vs. ExPASy Swiss-Prot
Match: Q8RWM3 (Mediator of RNA polymerase II transcription subunit 27 OS=Arabidopsis thaliana OX=3702 GN=MED27 PE=1 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 2.7e-124
Identity = 240/420 (57.14%), Postives = 301/420 (71.67%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
           M+ + Q    Q    + N  S S   DAPPKQVA AM+RL  AAR+IADIRLGADR+LEA
Sbjct: 1   MQTLHQSQLLQNPAEAANNQSES---DAPPKQVAQAMERLNQAARVIADIRLGADRILEA 60

Query: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
           + V +QP  +  PL LF +EDASMRQHL DLR +GK+LEESGVL+ESL SRSNSWGLHMP
Sbjct: 61  MFVASQPRHTDMPLQLFLREDASMRQHLQDLRLIGKKLEESGVLTESLRSRSNSWGLHMP 120

Query: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
           LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPH++D      EP+ K
Sbjct: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHIDD--GLKMEPSSK 180

Query: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN 240
           K   SH + +  + E +D ++L DI S +EK VP +K+ TY RL+WLK+A++LP   +++
Sbjct: 181 KHRASHLLLENGREEPVDYKTLPDIQSRLEKLVPSVKVSTYGRLNWLKRANSLPGSGSDD 240

Query: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300
              A K     S ++  G L     DK  VIEL  PS+FRA+VSL P GSV+PDA+AFFS
Sbjct: 241 PTEASKPIFQSSSKLRSG-LQTEVVDKIAVIELSFPSLFRAIVSLSPAGSVDPDAVAFFS 300

Query: 301 PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
           PDE GS++HARGFS YHV++H+TEHAAT LQYFLG     ALY LLLWICS++++FSK C
Sbjct: 301 PDEGGSYLHARGFSVYHVYKHITEHAATALQYFLGFGTGTALYSLLLWICSFESVFSKPC 360

Query: 361 SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE 420
           +KCGR L+++K+S L+LPP+ R Y++   + N             LD  +A+H  C  ++
Sbjct: 361 TKCGRLLAMDKKSALILPPLHRAYQELPLALN-------------LDVCEAYHSSCSQDD 401

[Close]

BLAST of Cmc04g0115771 vs. ExPASy TrEMBL
Match: A0A1S3B7L6 (mediator of RNA polymerase II transcription subunit 27 OS=Cucumis melo OX=3656 GN=LOC103486676 PE=3 SV=1)

HSP 1 Score: 837.4 bits (2162), Expect = 2.6e-239
Identity = 420/421 (99.76%), Postives = 421/421 (100.00%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
           MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA
Sbjct: 1   MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60

Query: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
           LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP
Sbjct: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120

Query: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
           LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK
Sbjct: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180

Query: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN 240
           KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN
Sbjct: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN 240

Query: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300
           SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHP+GSVEPDALAFFS
Sbjct: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPIGSVEPDALAFFS 300

Query: 301 PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
           PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC
Sbjct: 301 PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360

Query: 361 SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE 420
           SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE
Sbjct: 361 SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE 420

Query: 421 I 422
           I
Sbjct: 421 I 421

[Close]

BLAST of Cmc04g0115771 vs. ExPASy TrEMBL
Match: A0A0A0LGT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G781560 PE=3 SV=1)

HSP 1 Score: 826.6 bits (2134), Expect = 4.6e-236
Identity = 414/421 (98.34%), Postives = 417/421 (99.05%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
           MRHIQQPSQGQTATVSP+THSP S DDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA
Sbjct: 1   MRHIQQPSQGQTATVSPSTHSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60

Query: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
           LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP
Sbjct: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120

Query: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
           LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK
Sbjct: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180

Query: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN 240
           KPCFSHGVTDVKQNELIDSRSLSDILSC+EKEVPELKIFTYERLDWLKQASALPSQANEN
Sbjct: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANEN 240

Query: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300
           SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
Sbjct: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300

Query: 301 PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
           PDERGSHVHARGFSNYH+FRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC
Sbjct: 301 PDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360

Query: 361 SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE 420
           SKCGRRLSVNKQSDLLLPP VRPYKQFCASKNSS VPITSLKDQKLDSVQAFHIDCFSEE
Sbjct: 361 SKCGRRLSVNKQSDLLLPPAVRPYKQFCASKNSSVVPITSLKDQKLDSVQAFHIDCFSEE 420

Query: 421 I 422
           I
Sbjct: 421 I 421

[Close]

BLAST of Cmc04g0115771 vs. ExPASy TrEMBL
Match: A0A6J1FP59 (mediator of RNA polymerase II transcription subunit 27 OS=Cucurbita moschata OX=3662 GN=LOC111446014 PE=3 SV=1)

HSP 1 Score: 741.9 bits (1914), Expect = 1.5e-210
Identity = 374/422 (88.63%), Postives = 393/422 (93.13%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MR  Q P+QG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRQTQLPAQGLTATVSPTTVLRHSSGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++EN SN EP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDEENGSNMEP 180

Query: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQA 240
           A KKPCFSHGVTDVKQ EL DS SLSDIL+C+EKEVP+LKIFTYERLDWLKQASALPSQA
Sbjct: 181 AQKKPCFSHGVTDVKQEELNDSSSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA 300
           NENSIGALKEH+YHSPRMSP +L AT  DKA VIELIIPSVFRAVVSLHPVGSVEPDA+A
Sbjct: 241 NENSIGALKEHNYHSPRMSPRSLDATSTDKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA 300

Query: 301 FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360
           FFSPDERGSHVHARGFSN+H+FRHVTEHAATVLQYF+G Q KAAL+PLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFIGIQAKAALHPLLLWICSYQNLFS 360

Query: 361 KACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCF 420
           KACSKCGR LSVNKQSDLLLPP +RPYKQFC SK SS VP+TSLKDQKLDSVQAFHI CF
Sbjct: 361 KACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSKISSVVPVTSLKDQKLDSVQAFHIGCF 420

[Close]

BLAST of Cmc04g0115771 vs. ExPASy TrEMBL
Match: A0A6J1KZZ9 (mediator of RNA polymerase II transcription subunit 27 OS=Cucurbita maxima OX=3661 GN=LOC111498620 PE=3 SV=1)

HSP 1 Score: 740.3 bits (1910), Expect = 4.3e-210
Identity = 373/422 (88.39%), Postives = 392/422 (92.89%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MR  Q P+QG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRQTQLPAQGLTATVSPTTVLRHSSGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++EN SN EP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDEENGSNMEP 180

Query: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQA 240
           A KKPCFSHGVTDVKQ EL DS SLSDIL+C+EKEVP+LKIFTYERLDWLKQAS LPSQA
Sbjct: 181 AQKKPCFSHGVTDVKQEELNDSSSLSDILTCMEKEVPDLKIFTYERLDWLKQASVLPSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA 300
           NENSIG LKEH+YHSPRMSP +L AT  DKA VIELIIPSVFRAVVSLHPVGSVEPDA+A
Sbjct: 241 NENSIGTLKEHNYHSPRMSPRSLDATSTDKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA 300

Query: 301 FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360
           FFSPDERGSHVHARGFSN+H+FRHVTEHAATVLQYF+G Q KAAL+PLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFIGIQAKAALHPLLLWICSYQNLFS 360

Query: 361 KACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCF 420
           KACSKCGR LSVNKQSDLLLPP +RPYKQFC SK SSAVP+TSLKDQKLDSVQAFHI CF
Sbjct: 361 KACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSKISSAVPVTSLKDQKLDSVQAFHIGCF 420

[Close]

BLAST of Cmc04g0115771 vs. ExPASy TrEMBL
Match: A0A6J1DC62 (mediator of RNA polymerase II transcription subunit 27 OS=Momordica charantia OX=3673 GN=LOC111019372 PE=3 SV=1)

HSP 1 Score: 721.1 bits (1860), Expect = 2.7e-204
Identity = 362/424 (85.38%), Postives = 390/424 (91.98%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MR  QQP+QGQTATVSPNT   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTA PHQS+KPLHLFQKED SMRQHL DLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DE+  N EP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEP 180

Query: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQA 240
           ALKKPCFSHGVT++KQ+EL + R+LSDIL+C+EKEVP+LKIFTYERLDWLKQA AL SQA
Sbjct: 181 ALKKPCFSHGVTEIKQDELNEPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA 300
           N+NSIGALKEH+YHSPRM PG+L A+  DK  VIELIIPSVFRAVVSLHPVGSVEPDA+A
Sbjct: 241 NDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA 300

Query: 301 FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360
           FF+PDERGS+VHARGFS +H+FRHVTEHAATVLQYFLG Q KAALYPLLLWICSYQNLFS
Sbjct: 301 FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFS 360

Query: 361 KACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCF 420
           KACSKCGR LSVNKQSDLLLPP +RPYKQFC S+  SAVPI+SLKDQ+ D VQAFHI CF
Sbjct: 361 KACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVPISSLKDQRSDPVQAFHIGCF 420

Query: 421 SEEI 422
           SEE+
Sbjct: 421 SEEL 424

[Close]

BLAST of Cmc04g0115771 vs. TAIR 10
Match: AT3G09180.1 (CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 446.8 bits (1148), Expect = 1.9e-125
Identity = 240/420 (57.14%), Postives = 301/420 (71.67%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
           M+ + Q    Q    + N  S S   DAPPKQVA AM+RL  AAR+IADIRLGADR+LEA
Sbjct: 1   MQTLHQSQLLQNPAEAANNQSES---DAPPKQVAQAMERLNQAARVIADIRLGADRILEA 60

Query: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
           + V +QP  +  PL LF +EDASMRQHL DLR +GK+LEESGVL+ESL SRSNSWGLHMP
Sbjct: 61  MFVASQPRHTDMPLQLFLREDASMRQHLQDLRLIGKKLEESGVLTESLRSRSNSWGLHMP 120

Query: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
           LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPH++D      EP+ K
Sbjct: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHIDD--GLKMEPSSK 180

Query: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN 240
           K   SH + +  + E +D ++L DI S +EK VP +K+ TY RL+WLK+A++LP   +++
Sbjct: 181 KHRASHLLLENGREEPVDYKTLPDIQSRLEKLVPSVKVSTYGRLNWLKRANSLPGSGSDD 240

Query: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300
              A K     S ++  G L     DK  VIEL  PS+FRA+VSL P GSV+PDA+AFFS
Sbjct: 241 PTEASKPIFQSSSKLRSG-LQTEVVDKIAVIELSFPSLFRAIVSLSPAGSVDPDAVAFFS 300

Query: 301 PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
           PDE GS++HARGFS YHV++H+TEHAAT LQYFLG     ALY LLLWICS++++FSK C
Sbjct: 301 PDEGGSYLHARGFSVYHVYKHITEHAATALQYFLGFGTGTALYSLLLWICSFESVFSKPC 360

Query: 361 SKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEE 420
           +KCGR L+++K+S L+LPP+ R Y++   + N             LD  +A+H  C  ++
Sbjct: 361 TKCGRLLAMDKKSALILPPLHRAYQELPLALN-------------LDVCEAYHSSCSQDD 401

The following BLAST results are available for this feature:

BLAST of Cmc04g0115771 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442914.1	5.4e-239	99.76	PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Cucumis melo]	[more]
XP_004136512.1	9.5e-236	98.34	mediator of RNA polymerase II transcription subunit 27 isoform X1 [Cucumis sativ...	[more]
XP_038904949.1	8.9e-226	93.63	mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida] >XP_0...	[more]
XP_022940393.1	3.1e-210	88.63	mediator of RNA polymerase II transcription subunit 27 [Cucurbita moschata]	[more]
XP_023539656.1	4.0e-210	88.86	mediator of RNA polymerase II transcription subunit 27 [Cucurbita pepo subsp. pe...	[more]

BLAST of Cmc04g0115771 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWM3	2.7e-124	57.14	Mediator of RNA polymerase II transcription subunit 27 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc04g0115771 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B7L6	2.6e-239	99.76	mediator of RNA polymerase II transcription subunit 27 OS=Cucumis melo OX=3656 G...	[more]
A0A0A0LGT1	4.6e-236	98.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G781560 PE=3 SV=1	[more]
A0A6J1FP59	1.5e-210	88.63	mediator of RNA polymerase II transcription subunit 27 OS=Cucurbita moschata OX=...	[more]
A0A6J1KZZ9	4.3e-210	88.39	mediator of RNA polymerase II transcription subunit 27 OS=Cucurbita maxima OX=36...	[more]
A0A6J1DC62	2.7e-204	85.38	mediator of RNA polymerase II transcription subunit 27 OS=Momordica charantia OX...	[more]

BLAST of Cmc04g0115771 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09180.1	1.9e-125	57.14	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627);...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021627	Mediator complex, subunit Med27	PFAM	PF11571	Med27	coord: 314..416 e-value: 1.3E-24 score: 86.4
IPR021627	Mediator complex, subunit Med27	PANTHER	PTHR13130	34 KDA TRANSCRIPTIONAL CO-ACTIVATOR-RELATED	coord: 2..392
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR13130:SF5	BNAC03G36240D PROTEIN	coord: 2..392

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0115771.1	Cmc04g0115771.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003713	transcription coactivator activity