Cmc04g0110361 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0110361
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Beta-galactosidase
Location	CMiso1.1chr04: 29651045 .. 29651716 (-)
RNA-Seq Expression	Cmc04g0110361
Synteny	Cmc04g0110361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGAGAATGACAAGTCGGATGTTGCTGTTCTTAAAAATATGGGTGAAAATAACTGTGGTGATGAGATTGTGGTTAGAATAGAAATCAGTAATGATGAAGCAGCACAGGGTCATACAAGGAAACTTGATGAGTATGATCCCTCTCTTGACATTCCCATTGATGAGTATAATCTCTCTTCACAGTTTAGAACGTTTACAGCAAGCCTTGACTCTACCATAATACCGAAAAATATCTACACTTCTATAAAGTGTCATGAATGGAAAAATGCTGTTATGGAAGAGATGAATGCTCTTGAAAAGAATAGAACTTGGGAGATCTGTGCTCTACCCAAGAGACATAAAACTGTAGGATACAAATGGGTGTTCTCTCTCAAATACAAAGCAGATGGTACGCTTGATAGACACAAGGCAAGGTTAGTTGAAAAGAAATTTACTCAGACCTATGGTATTAACTGTTCAGAAACCGTTTCTCCAGTTGCTAAGTTGAATACTGTTAGAGTCTTCCTATCTGTTGTTGTGAACAAAGATTGGCCTCTATACCAGCTGGATGTTAAGAATACTTTTTTGAATGGAGACCTTGTGGAGGAAGTCTACATGAGCCCCCACCAAGATTTGAAGCCCAATTTGCTCAGCAGGTGTGTAAACTCCAAAAATCCCTATATGGTCTGA

mRNA sequence

ATGAGTGAGAATGACAAGTCGGATGTTGCTGTTCTTAAAAATATGGGTGAAAATAACTGTGGTGATGAGATTGTGGTTAGAATAGAAATCAGTAATGATGAAGCAGCACAGGGTCATACAAGGAAACTTGATGAGTATGATCCCTCTCTTGACATTCCCATTGATGAGTATAATCTCTCTTCACAGTTTAGAACGTTTACAGCAAGCCTTGACTCTACCATAATACCGAAAAATATCTACACTTCTATAAAGTGTCATGAATGGAAAAATGCTGTTATGGAAGAGATGAATGCTCTTGAAAAGAATAGAACTTGGGAGATCTGTGCTCTACCCAAGAGACATAAAACTGTAGGATACAAATGGGTGTTCTCTCTCAAATACAAAGCAGATGGTACGCTTGATAGACACAAGGCAAGGTTAGTTGAAAAGAAATTTACTCAGACCTATGGTATTAACTGTTCAGAAACCGTTTCTCCAGTTGCTAAGTTGAATACTGTTAGAGTCTTCCTATCTGTTGTTGTGAACAAAGATTGGCCTCTATACCAGCTGGATGTTAAGAATACTTTTTTGAATGGAGACCTTGTGGAGGAAGTCTACATGAGCCCCCACCAAGATTTGAAGCCCAATTTGCTCAGCAGGTGTGTAAACTCCAAAAATCCCTATATGGTCTGA

Coding sequence (CDS)

ATGAGTGAGAATGACAAGTCGGATGTTGCTGTTCTTAAAAATATGGGTGAAAATAACTGTGGTGATGAGATTGTGGTTAGAATAGAAATCAGTAATGATGAAGCAGCACAGGGTCATACAAGGAAACTTGATGAGTATGATCCCTCTCTTGACATTCCCATTGATGAGTATAATCTCTCTTCACAGTTTAGAACGTTTACAGCAAGCCTTGACTCTACCATAATACCGAAAAATATCTACACTTCTATAAAGTGTCATGAATGGAAAAATGCTGTTATGGAAGAGATGAATGCTCTTGAAAAGAATAGAACTTGGGAGATCTGTGCTCTACCCAAGAGACATAAAACTGTAGGATACAAATGGGTGTTCTCTCTCAAATACAAAGCAGATGGTACGCTTGATAGACACAAGGCAAGGTTAGTTGAAAAGAAATTTACTCAGACCTATGGTATTAACTGTTCAGAAACCGTTTCTCCAGTTGCTAAGTTGAATACTGTTAGAGTCTTCCTATCTGTTGTTGTGAACAAAGATTGGCCTCTATACCAGCTGGATGTTAAGAATACTTTTTTGAATGGAGACCTTGTGGAGGAAGTCTACATGAGCCCCCACCAAGATTTGAAGCCCAATTTGCTCAGCAGGTGTGTAAACTCCAAAAATCCCTATATGGTCTGA

Protein sequence

MSENDKSDVAVLKNMGENNCGDEIVVRIEISNDEAAQGHTRKLDEYDPSLDIPIDEYNLSSQFRTFTASLDSTIIPKNIYTSIKCHEWKNAVMEEMNALEKNRTWEICALPKRHKTVGYKWVFSLKYKADGTLDRHKARLVEKKFTQTYGINCSETVSPVAKLNTVRVFLSVVVNKDWPLYQLDVKNTFLNGDLVEEVYMSPHQDLKPNLLSRCVNSKNPYMV

Homology

[Close]

BLAST of Cmc04g0110361 vs. NCBI nr
Match: KAA0057264.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK05843.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 432.2 bits (1110), Expect = 2.8e-117
Identity = 210/213 (98.59%), Postives = 212/213 (99.53%), Query Frame = 0


Query: 1   MSENDKSDVAVLKNMGENNCGDEIVVRIEISNDEAAQGHTRKLDEYDPSLDIPIDEYNLS 60
           MSENDKSDVAVL+NMGENNCGDEI VRIEISNDEAAQGHTRKLDEYDPSLDIPIDEYNLS
Sbjct: 192 MSENDKSDVAVLENMGENNCGDEIEVRIEISNDEAAQGHTRKLDEYDPSLDIPIDEYNLS 251

Query: 61  SQFRTFTASLDSTIIPKNIYTSIKCHEWKNAVMEEMNALEKNRTWEICALPKRHKTVGYK 120
           SQFRTFTASLDSTIIPKNIYTSIKCHEWKNAVMEEMNALEKNRTWEICALPKRHKTVGYK
Sbjct: 252 SQFRTFTASLDSTIIPKNIYTSIKCHEWKNAVMEEMNALEKNRTWEICALPKRHKTVGYK 311

Query: 121 WVFSLKYKADGTLDRHKARLVEKKFTQTYGINCSETVSPVAKLNTVRVFLSVVVNKDWPL 180
           WVFSLKYKADGTLDRHKARLVEKKFTQTYGINCSETVSPVAKLNTVRVFLSVVVNKDWPL
Sbjct: 312 WVFSLKYKADGTLDRHKARLVEKKFTQTYGINCSETVSPVAKLNTVRVFLSVVVNKDWPL 371

Query: 181 YQLDVKNTFLNGDLVEEVYMSPHQDLKPNLLSR 214
           YQLDVKNTFLNGDLVEEVYMSPHQDLKPNL+SR
Sbjct: 372 YQLDVKNTFLNGDLVEEVYMSPHQDLKPNLVSR 404

[Close]

BLAST of Cmc04g0110361 vs. NCBI nr
Match: KAA0059995.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 350.1 bits (897), Expect = 1.4e-92
Identity = 180/231 (77.92%), Postives = 187/231 (80.95%), Query Frame = 0


Query: 1   MSENDKSDVAVLKNMGENNCGDEIVVRIEISNDEAAQGHTRKLDEYDPSLDIPI------ 60
           MSENDKSDVAVL+NM E N  DE  VRIE SNDEA QGHTRKLDEYDPSLDIPI      
Sbjct: 13  MSENDKSDVAVLENMEEKNRDDETEVRIETSNDEAEQGHTRKLDEYDPSLDIPIVLRKGT 72

Query: 61  ------------DEYNLSSQFRTFTASLDSTIIPKNIYTSIKCHEWKNAVMEEMNALEKN 120
                          NLS QFR FTASLDSTIIP+NIYT+++C EWKN VMEEM ALEKN
Sbjct: 73  RSCTKHPICNYVSYDNLSPQFRAFTASLDSTIIPENIYTALECPEWKNVVMEEMKALEKN 132

Query: 121 RTWEICALPKRHKTVGYKWVFSLKYKADGTLDRHKARLVEKKFTQTYGINCSETVSPVAK 180
           RTWEICALPK HKTVG KWVFSLKYKADGTLDRHKARLV K FTQTYGI+ SET SPVAK
Sbjct: 133 RTWEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTYGIDYSETFSPVAK 192

Query: 181 LNTVRVFLSVVVNKDWPLYQLDVKNTFLNGDLVEEVYMSPHQDLKPNLLSR 214
           LN VRV LSV VNKDWPLYQLDVKN FLNGDLVEEVYMSPHQDLKPNL+SR
Sbjct: 193 LNNVRVLLSVAVNKDWPLYQLDVKNAFLNGDLVEEVYMSPHQDLKPNLVSR 243

[Close]

BLAST of Cmc04g0110361 vs. NCBI nr
Match: TYK06119.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 344.4 bits (882), Expect = 7.6e-91
Identity = 177/228 (77.63%), Postives = 184/228 (80.70%), Query Frame = 0


Query: 1   MSENDKSDVAVLKNMGENNCGDEIVVRIEISNDEAAQGHTRKLDEYDPSLDIPI------ 60
           MSENDKSD+A L+NM E NC DE  VRIE SNDEA QGHTRKLDEYDPSLDIPI      
Sbjct: 676 MSENDKSDIAFLENMEEKNCDDETEVRIETSNDEAEQGHTRKLDEYDPSLDIPIALRKGT 735

Query: 61  ------------DEYNLSSQFRTFTASLDSTIIPKNIYTSIKCHEWKNAVMEEMNALEKN 120
                          NLS QFR FTA+LDSTIIPKNIYT+++C EWKNAVMEEM ALEKN
Sbjct: 736 RSCTKHPICNYVSYDNLSPQFRAFTANLDSTIIPKNIYTALECPEWKNAVMEEMKALEKN 795

Query: 121 RTWEICALPKRHKTVGYKWVFSLKYKADGTLDRHKARLVEKKFTQTYGINCSETVSPVAK 180
           RTWEICALPK HKTVG KWVFSLKYKADGTLDRHKARLV K FTQTYGI+ SET SPVAK
Sbjct: 796 RTWEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTYGIDYSETFSPVAK 855

Query: 181 LNTVRVFLSVVVNKDWPLYQLDVKNTFLNGDLVEEVYMSPHQDLKPNL 211
           LNTVRV LSV VNKDWPLYQLDVKN FLNGDLVEEVYMSP QDLK NL
Sbjct: 856 LNTVRVLLSVAVNKDWPLYQLDVKNGFLNGDLVEEVYMSPRQDLKLNL 903

[Close]

BLAST of Cmc04g0110361 vs. NCBI nr
Match: KAA0067540.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 339.3 bits (869), Expect = 2.4e-89
Identity = 174/220 (79.09%), Postives = 180/220 (81.82%), Query Frame = 0


Query: 1    MSENDKSDVAVLKNMGENNCGDEIVVRIEISNDEAAQGHTRKLDEYDPSLDIPI------ 60
            MSENDKSDVAVL+NM E NC DE  VRIE SNDEA QGHTRKLDEYDPSLDIPI      
Sbjct: 932  MSENDKSDVAVLENMEEKNCDDETEVRIETSNDEAEQGHTRKLDEYDPSLDIPIALRKGT 991

Query: 61   ------------DEYNLSSQFRTFTASLDSTIIPKNIYTSIKCHEWKNAVMEEMNALEKN 120
                           NLS QFR FTASLDSTIIPKNIYT+++C EWKNAVMEEM ALEKN
Sbjct: 992  RSCTKHPICNYVSYDNLSPQFRAFTASLDSTIIPKNIYTALECPEWKNAVMEEMKALEKN 1051

Query: 121  RTWEICALPKRHKTVGYKWVFSLKYKADGTLDRHKARLVEKKFTQTYGINCSETVSPVAK 180
            RTWEICALPK HKTVG KWVFSLKYKADGTLDRHKARLV K+FTQTYGI+ SET SPVAK
Sbjct: 1052 RTWEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKEFTQTYGIDYSETFSPVAK 1111

Query: 181  LNTVRVFLSVVVNKDWPLYQLDVKNTFLNGDLVEEVYMSP 203
            LNTVRV LSV VNKDWPLYQLDVKN FLNGDLVEEVYMSP
Sbjct: 1112 LNTVRVLLSVAVNKDWPLYQLDVKNAFLNGDLVEEVYMSP 1151

[Close]

BLAST of Cmc04g0110361 vs. NCBI nr
Match: KAA0031941.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 336.7 bits (862), Expect = 1.6e-88
Identity = 172/220 (78.18%), Postives = 179/220 (81.36%), Query Frame = 0


Query: 1    MSENDKSDVAVLKNMGENNCGDEIVVRIEISNDEAAQGHTRKLDEYDPSLDIPI------ 60
            MSENDKSD+AVL+NM E NC DE  VRIE SNDEA QGHTRKLDEYDPSLDIPI      
Sbjct: 976  MSENDKSDIAVLENMEEKNCDDETEVRIETSNDEAEQGHTRKLDEYDPSLDIPIALRKGT 1035

Query: 61   ------------DEYNLSSQFRTFTASLDSTIIPKNIYTSIKCHEWKNAVMEEMNALEKN 120
                           NLS QFR FTA+LDSTIIPKNIYT+++C EWKNAVMEEM ALEKN
Sbjct: 1036 RSCTKHPICNYVSYDNLSPQFRAFTANLDSTIIPKNIYTALECPEWKNAVMEEMKALEKN 1095

Query: 121  RTWEICALPKRHKTVGYKWVFSLKYKADGTLDRHKARLVEKKFTQTYGINCSETVSPVAK 180
            RTWEICALPK HKTVG KWVFSLKYKADGTLDRHKARLV K FTQTYGI+ SET SPVAK
Sbjct: 1096 RTWEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTYGIDYSETFSPVAK 1155

Query: 181  LNTVRVFLSVVVNKDWPLYQLDVKNTFLNGDLVEEVYMSP 203
            LNTVRV LSV VNKDWPLYQLDVKN FLNGDLVEEVYMSP
Sbjct: 1156 LNTVRVLLSVAVNKDWPLYQLDVKNAFLNGDLVEEVYMSP 1195

[Close]

BLAST of Cmc04g0110361 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-27
Identity = 59/138 (42.75%), Postives = 88/138 (63.77%), Query Frame = 0


Query: 65   TFTASLDSTIIPKNIYTSIKCHEWKNAVMEEMNALEKNRTWEICALPKRHKT-VGYKWVF 124
            +   SL +   P+    ++K   W+NA+  E+NA   N TW++   P  H T VG +W+F
Sbjct: 945  SLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIF 1004

Query: 125  SLKYKADGTLDRHKARLVEKKFTQTYGINCSETVSPVAKLNTVRVFLSVVVNKDWPLYQL 184
            + KY +DG+L+R+KARLV K + Q  G++ +ET SPV K  ++R+ L V V++ WP+ QL
Sbjct: 1005 TKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQL 1064

Query: 185  DVKNTFLNGDLVEEVYMS 202
            DV N FL G L ++VYMS
Sbjct: 1065 DVNNAFLQGTLTDDVYMS 1082

[Close]

BLAST of Cmc04g0110361 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.2e-26
Identity = 58/142 (40.85%), Postives = 89/142 (62.68%), Query Frame = 0


Query: 61   SQFRTFTASLDSTIIPKNIYTSIKCHEWKNAVMEEMNALEKNRTWEICALPKRHKT-VGY 120
            +Q  ++  SL +   P+    ++K   W+ A+  E+NA   N TW++   P    T VG 
Sbjct: 924  NQKYSYATSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGC 983

Query: 121  KWVFSLKYKADGTLDRHKARLVEKKFTQTYGINCSETVSPVAKLNTVRVFLSVVVNKDWP 180
            +W+F+ K+ +DG+L+R+KARLV K + Q  G++ +ET SPV K  ++R+ L V V++ WP
Sbjct: 984  RWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWP 1043

Query: 181  LYQLDVKNTFLNGDLVEEVYMS 202
            + QLDV N FL G L +EVYMS
Sbjct: 1044 IRQLDVNNAFLQGTLTDEVYMS 1065

[Close]

BLAST of Cmc04g0110361 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 109.4 bits (272), Expect = 5.4e-23
Identity = 56/134 (41.79%), Postives = 81/134 (60.45%), Query Frame = 0


Query: 88   WKNAVMEEMNALEKNRTWEICALPKRHKTVGYKWVFSLKYKADGTLDRHKARLVEKKFTQ 147
            W+ A+  E+NA + N TW I   P+    V  +WVFS+KY   G   R+KARLV + FTQ
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 148  TYGINCSETVSPVAKLNTVRVFLSVVVNKDWPLYQLDVKNTFLNGDLVEEVYMSPHQDLK 207
             Y I+  ET +PVA++++ R  LS+V+  +  ++Q+DVK  FLNG L EE+YM   Q + 
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGIS 1025

Query: 208  PNLLSRCVNSKNPY 222
             N  + C  +K  Y
Sbjct: 1026 CNSDNVCKLNKAIY 1039

[Close]

BLAST of Cmc04g0110361 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.3e-21
Identity = 54/124 (43.55%), Postives = 77/124 (62.10%), Query Frame = 0


Query: 77  KNIYTSIKCHEWKNAVMEEMNALEKNRTWEICALPKRHKTVGYKWVFSLKYKADGTLDRH 136
           K + +  + ++   A+ EEM +L+KN T+++  LPK  + +  KWVF LK   D  L R+
Sbjct: 815 KEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRY 874

Query: 137 KARLVEKKFTQTYGINCSETVSPVAKLNTVRVFLSVVVNKDWPLYQLDVKNTFLNGDLVE 196
           KARLV K F Q  GI+  E  SPV K+ ++R  LS+  + D  + QLDVK  FL+GDL E
Sbjct: 875 KARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEE 934

Query: 197 EVYM 201
           E+YM
Sbjct: 935 EIYM 938

[Close]

BLAST of Cmc04g0110361 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.2e-16
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 76  PKNIYTSIKCHEWKNAVMEEMNALEKNRTWEICALPKRHKTVGYKWVFSLKYKADGTLDR 135
           PK++  ++K   W  A+ EE++AL +N+TW +   P     +G KWVF  K  +DGTLDR
Sbjct: 28  PKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDR 87

Query: 136 HKARLVEKKFTQTYGINCSETVSPVAKLNTVRVFLSV 173
            KARLV K F Q  GI   ET SPV +  T+R  L+V
Sbjct: 88  LKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNV 124

[Close]

BLAST of Cmc04g0110361 vs. ExPASy TrEMBL
Match: A0A5D3C1M2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5764G00010 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 1.3e-117
Identity = 210/213 (98.59%), Postives = 212/213 (99.53%), Query Frame = 0


Query: 1   MSENDKSDVAVLKNMGENNCGDEIVVRIEISNDEAAQGHTRKLDEYDPSLDIPIDEYNLS 60
           MSENDKSDVAVL+NMGENNCGDEI VRIEISNDEAAQGHTRKLDEYDPSLDIPIDEYNLS
Sbjct: 192 MSENDKSDVAVLENMGENNCGDEIEVRIEISNDEAAQGHTRKLDEYDPSLDIPIDEYNLS 251

Query: 61  SQFRTFTASLDSTIIPKNIYTSIKCHEWKNAVMEEMNALEKNRTWEICALPKRHKTVGYK 120
           SQFRTFTASLDSTIIPKNIYTSIKCHEWKNAVMEEMNALEKNRTWEICALPKRHKTVGYK
Sbjct: 252 SQFRTFTASLDSTIIPKNIYTSIKCHEWKNAVMEEMNALEKNRTWEICALPKRHKTVGYK 311

Query: 121 WVFSLKYKADGTLDRHKARLVEKKFTQTYGINCSETVSPVAKLNTVRVFLSVVVNKDWPL 180
           WVFSLKYKADGTLDRHKARLVEKKFTQTYGINCSETVSPVAKLNTVRVFLSVVVNKDWPL
Sbjct: 312 WVFSLKYKADGTLDRHKARLVEKKFTQTYGINCSETVSPVAKLNTVRVFLSVVVNKDWPL 371

Query: 181 YQLDVKNTFLNGDLVEEVYMSPHQDLKPNLLSR 214
           YQLDVKNTFLNGDLVEEVYMSPHQDLKPNL+SR
Sbjct: 372 YQLDVKNTFLNGDLVEEVYMSPHQDLKPNLVSR 404

[Close]

BLAST of Cmc04g0110361 vs. ExPASy TrEMBL
Match: A0A5A7V282 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold340G00390 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 6.7e-93
Identity = 180/231 (77.92%), Postives = 187/231 (80.95%), Query Frame = 0


Query: 1   MSENDKSDVAVLKNMGENNCGDEIVVRIEISNDEAAQGHTRKLDEYDPSLDIPI------ 60
           MSENDKSDVAVL+NM E N  DE  VRIE SNDEA QGHTRKLDEYDPSLDIPI      
Sbjct: 13  MSENDKSDVAVLENMEEKNRDDETEVRIETSNDEAEQGHTRKLDEYDPSLDIPIVLRKGT 72

Query: 61  ------------DEYNLSSQFRTFTASLDSTIIPKNIYTSIKCHEWKNAVMEEMNALEKN 120
                          NLS QFR FTASLDSTIIP+NIYT+++C EWKN VMEEM ALEKN
Sbjct: 73  RSCTKHPICNYVSYDNLSPQFRAFTASLDSTIIPENIYTALECPEWKNVVMEEMKALEKN 132

Query: 121 RTWEICALPKRHKTVGYKWVFSLKYKADGTLDRHKARLVEKKFTQTYGINCSETVSPVAK 180
           RTWEICALPK HKTVG KWVFSLKYKADGTLDRHKARLV K FTQTYGI+ SET SPVAK
Sbjct: 133 RTWEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTYGIDYSETFSPVAK 192

Query: 181 LNTVRVFLSVVVNKDWPLYQLDVKNTFLNGDLVEEVYMSPHQDLKPNLLSR 214
           LN VRV LSV VNKDWPLYQLDVKN FLNGDLVEEVYMSPHQDLKPNL+SR
Sbjct: 193 LNNVRVLLSVAVNKDWPLYQLDVKNAFLNGDLVEEVYMSPHQDLKPNLVSR 243

[Close]

BLAST of Cmc04g0110361 vs. ExPASy TrEMBL
Match: A0A5D3C6W4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold572G00090 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.7e-91
Identity = 177/228 (77.63%), Postives = 184/228 (80.70%), Query Frame = 0


Query: 1   MSENDKSDVAVLKNMGENNCGDEIVVRIEISNDEAAQGHTRKLDEYDPSLDIPI------ 60
           MSENDKSD+A L+NM E NC DE  VRIE SNDEA QGHTRKLDEYDPSLDIPI      
Sbjct: 676 MSENDKSDIAFLENMEEKNCDDETEVRIETSNDEAEQGHTRKLDEYDPSLDIPIALRKGT 735

Query: 61  ------------DEYNLSSQFRTFTASLDSTIIPKNIYTSIKCHEWKNAVMEEMNALEKN 120
                          NLS QFR FTA+LDSTIIPKNIYT+++C EWKNAVMEEM ALEKN
Sbjct: 736 RSCTKHPICNYVSYDNLSPQFRAFTANLDSTIIPKNIYTALECPEWKNAVMEEMKALEKN 795

Query: 121 RTWEICALPKRHKTVGYKWVFSLKYKADGTLDRHKARLVEKKFTQTYGINCSETVSPVAK 180
           RTWEICALPK HKTVG KWVFSLKYKADGTLDRHKARLV K FTQTYGI+ SET SPVAK
Sbjct: 796 RTWEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTYGIDYSETFSPVAK 855

Query: 181 LNTVRVFLSVVVNKDWPLYQLDVKNTFLNGDLVEEVYMSPHQDLKPNL 211
           LNTVRV LSV VNKDWPLYQLDVKN FLNGDLVEEVYMSP QDLK NL
Sbjct: 856 LNTVRVLLSVAVNKDWPLYQLDVKNGFLNGDLVEEVYMSPRQDLKLNL 903

[Close]

BLAST of Cmc04g0110361 vs. ExPASy TrEMBL
Match: A0A5A7VK49 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50G00640 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.2e-89
Identity = 174/220 (79.09%), Postives = 180/220 (81.82%), Query Frame = 0


Query: 1    MSENDKSDVAVLKNMGENNCGDEIVVRIEISNDEAAQGHTRKLDEYDPSLDIPI------ 60
            MSENDKSDVAVL+NM E NC DE  VRIE SNDEA QGHTRKLDEYDPSLDIPI      
Sbjct: 932  MSENDKSDVAVLENMEEKNCDDETEVRIETSNDEAEQGHTRKLDEYDPSLDIPIALRKGT 991

Query: 61   ------------DEYNLSSQFRTFTASLDSTIIPKNIYTSIKCHEWKNAVMEEMNALEKN 120
                           NLS QFR FTASLDSTIIPKNIYT+++C EWKNAVMEEM ALEKN
Sbjct: 992  RSCTKHPICNYVSYDNLSPQFRAFTASLDSTIIPKNIYTALECPEWKNAVMEEMKALEKN 1051

Query: 121  RTWEICALPKRHKTVGYKWVFSLKYKADGTLDRHKARLVEKKFTQTYGINCSETVSPVAK 180
            RTWEICALPK HKTVG KWVFSLKYKADGTLDRHKARLV K+FTQTYGI+ SET SPVAK
Sbjct: 1052 RTWEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKEFTQTYGIDYSETFSPVAK 1111

Query: 181  LNTVRVFLSVVVNKDWPLYQLDVKNTFLNGDLVEEVYMSP 203
            LNTVRV LSV VNKDWPLYQLDVKN FLNGDLVEEVYMSP
Sbjct: 1112 LNTVRVLLSVAVNKDWPLYQLDVKNAFLNGDLVEEVYMSP 1151

[Close]

BLAST of Cmc04g0110361 vs. ExPASy TrEMBL
Match: A0A5A7VLQ7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00690 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 7.6e-89
Identity = 172/220 (78.18%), Postives = 179/220 (81.36%), Query Frame = 0


Query: 1    MSENDKSDVAVLKNMGENNCGDEIVVRIEISNDEAAQGHTRKLDEYDPSLDIPI------ 60
            MSENDKSD+AVL+NM E NC DE  VRIE SNDEA QGHTRKLDEYDPSLDIPI      
Sbjct: 1002 MSENDKSDIAVLENMEEKNCDDETEVRIETSNDEAEQGHTRKLDEYDPSLDIPIALRKGT 1061

Query: 61   ------------DEYNLSSQFRTFTASLDSTIIPKNIYTSIKCHEWKNAVMEEMNALEKN 120
                           NLS QFR FTA+LDSTIIPKNIYT+++C EWKNAVMEEM ALEKN
Sbjct: 1062 RSCTKHPICNYVSYDNLSPQFRAFTANLDSTIIPKNIYTALECPEWKNAVMEEMKALEKN 1121

Query: 121  RTWEICALPKRHKTVGYKWVFSLKYKADGTLDRHKARLVEKKFTQTYGINCSETVSPVAK 180
            RTWEICALPK HKTVG KWVFSLKYKADGTLDRHKARLV K FTQTYGI+ SET SPVAK
Sbjct: 1122 RTWEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTYGIDYSETFSPVAK 1181

Query: 181  LNTVRVFLSVVVNKDWPLYQLDVKNTFLNGDLVEEVYMSP 203
            LNTVRV LSV VNKDWPLYQLDVKN FLNGDLVEEVYMSP
Sbjct: 1182 LNTVRVLLSVAVNKDWPLYQLDVKNAFLNGDLVEEVYMSP 1221

[Close]

BLAST of Cmc04g0110361 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 129.0 bits (323), Expect = 4.7e-30
Identity = 63/136 (46.32%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 88  WKNAVMEEMNALEKNRTWEICALPKRHKTVGYKWVFSLKYKADGTLDRHKARLVEKKFTQ 147
           W  A+ +E+ A+E   TWEIC LP   K +G KWV+ +KY +DGT++R+KARLV K +TQ
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157

Query: 148 TYGINCSETVSPVAKLNTVRVFLSVVVNKDWPLYQLDVKNTFLNGDLVEEVYMSPHQDLK 207
             GI+  ET SPV KL +V++ L++    ++ L+QLD+ N FLNGDL EE+YM     L 
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMK----LP 217

Query: 208 PNLLSRCVNSKNPYMV 224
           P   +R  +S  P  V
Sbjct: 218 PGYAARQGDSLPPNAV 229

[Close]

BLAST of Cmc04g0110361 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-17
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 76  PKNIYTSIKCHEWKNAVMEEMNALEKNRTWEICALPKRHKTVGYKWVFSLKYKADGTLDR 135
           PK++  ++K   W  A+ EE++AL +N+TW +   P     +G KWVF  K  +DGTLDR
Sbjct: 28  PKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDR 87

Query: 136 HKARLVEKKFTQTYGINCSETVSPVAKLNTVRVFLSV 173
            KARLV K F Q  GI   ET SPV +  T+R  L+V
Sbjct: 88  LKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNV 124

The following BLAST results are available for this feature:

BLAST of Cmc04g0110361 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057264.1	2.8e-117	98.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0059995.1	1.4e-92	77.92	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
TYK06119.1	7.6e-91	77.63	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0067540.1	2.4e-89	79.09	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0031941.1	1.6e-88	78.18	Beta-galactosidase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0110361 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.6e-27	42.75	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	5.2e-26	40.85	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	5.4e-23	41.79	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	2.3e-21	43.55	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92520	2.2e-16	45.36	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc04g0110361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1M2	1.3e-117	98.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V282	6.7e-93	77.92	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold340G0...	[more]
A0A5D3C6W4	3.7e-91	77.63	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold572G0...	[more]
A0A5A7VK49	1.2e-89	79.09	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50G00...	[more]
A0A5A7VLQ7	7.6e-89	78.18	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G0...	[more]

BLAST of Cmc04g0110361 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.7e-30	46.32	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.6e-17	45.36	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 102..202 e-value: 2.6E-26 score: 92.7
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 90..204
None	No IPR available	PANTHER	PTHR11439:SF322	CLASSICAL ARABINOGALACTAN PROTEIN 9-LIKE	coord: 90..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0110361.1	Cmc04g0110361.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006116	NADH oxidation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005777	peroxisome
molecular_function	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor
molecular_function	GO:0003954	NADH dehydrogenase activity
molecular_function	GO:0003676	nucleic acid binding