Cmc04g0104381 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0104381
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr04: 22062586 .. 22063380 (-)
RNA-Seq Expression	Cmc04g0104381
Synteny	Cmc04g0104381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTTCTTATCAAATACCATGTGGCGTTGGACTACTCCAATAAGGAGATAATATTGAGGAACCCTGGAAAGTTCGAAATCAAACTCGTAGGCAAGGAAGTTGATGAAGAAAGGACATATGCCTACCTGGCACGTACGGTAGTTACTCAGGCCCCACAAACTGAACCAAGTAAAGTGCCTATAATTTGCGAATACTTGGATGTATATCCAGAAGAATTGAGTGGATTGCCGTCAAAGAGAGAAATTAAGTTCACAATTGATGTGGCGCCTGGGACTACACCCATTTCTCAAACCCCCTATCGCATGGCACCGCCAAGCGAACTGAAGGAATCGAAAAACCAATTGGAGGAATTAATAGAGAAAGGGTACATTCGGCCTAGTACTTCACCATGGGGAGCCCATGTCCTATTCGTAAAGAAAAAGGATGGATCAATGAGATTGTGCATCGATTACCAACAATTAAACAAAGTAACAATTAAGAATATGTATCCCTTGCTGCAAATTATAAACGATCTTTTCTATCAATTAAAAGGAGCCTCAGTATTCTCTAAAATAGAATTGTATTCAGGTTACCACCAATTAAGAATTAAGAAGTCAGACGTGCCTAAAACGACATTTAGAATGCGTTATGAACATTATGAGTTCTTGGTGATGTCTTTTGGATTAACCAACACCCAAGCAACTTTTATGGACCTAATCAATCAAGTGTTTCACCACTATTTAGATCAGTTTGTTATTGTCTTCATCAGCGACATTTTAGTTTACTCTCCAGATGCAAAGAGACACGTATAA

mRNA sequence

ATGGATTTTCTTATCAAATACCATGTGGCGTTGGACTACTCCAATAAGGAGATAATATTGAGGAACCCTGGAAAGTTCGAAATCAAACTCGTAGGCAAGGAAGTTGATGAAGAAAGGACATATGCCTACCTGGCACGTACGGTAGTTACTCAGGCCCCACAAACTGAACCAAGTAAAGTGCCTATAATTTGCGAATACTTGGATGTATATCCAGAAGAATTGAGTGGATTGCCGTCAAAGAGAGAAATTAAGTTCACAATTGATGTGGCGCCTGGGACTACACCCATTTCTCAAACCCCCTATCGCATGGCACCGCCAAGCGAACTGAAGGAATCGAAAAACCAATTGGAGGAATTAATAGAGAAAGGGTACATTCGGCCTAGTACTTCACCATGGGGAGCCCATGTCCTATTCGTAAAGAAAAAGGATGGATCAATGAGATTGTGCATCGATTACCAACAATTAAACAAAGTAACAATTAAGAATATGTATCCCTTGCTGCAAATTATAAACGATCTTTTCTATCAATTAAAAGGAGCCTCAGTATTCTCTAAAATAGAATTGTATTCAGGTTACCACCAATTAAGAATTAAGAAGTCAGACGTGCCTAAAACGACATTTAGAATGCGTTATGAACATTATGAGTTCTTGGTGATGTCTTTTGGATTAACCAACACCCAAGCAACTTTTATGGACCTAATCAATCAAGTGTTTCACCACTATTTAGATCAGTTTGTTATTGTCTTCATCAGCGACATTTTAGTTTACTCTCCAGATGCAAAGAGACACGTATAA

Coding sequence (CDS)

ATGGATTTTCTTATCAAATACCATGTGGCGTTGGACTACTCCAATAAGGAGATAATATTGAGGAACCCTGGAAAGTTCGAAATCAAACTCGTAGGCAAGGAAGTTGATGAAGAAAGGACATATGCCTACCTGGCACGTACGGTAGTTACTCAGGCCCCACAAACTGAACCAAGTAAAGTGCCTATAATTTGCGAATACTTGGATGTATATCCAGAAGAATTGAGTGGATTGCCGTCAAAGAGAGAAATTAAGTTCACAATTGATGTGGCGCCTGGGACTACACCCATTTCTCAAACCCCCTATCGCATGGCACCGCCAAGCGAACTGAAGGAATCGAAAAACCAATTGGAGGAATTAATAGAGAAAGGGTACATTCGGCCTAGTACTTCACCATGGGGAGCCCATGTCCTATTCGTAAAGAAAAAGGATGGATCAATGAGATTGTGCATCGATTACCAACAATTAAACAAAGTAACAATTAAGAATATGTATCCCTTGCTGCAAATTATAAACGATCTTTTCTATCAATTAAAAGGAGCCTCAGTATTCTCTAAAATAGAATTGTATTCAGGTTACCACCAATTAAGAATTAAGAAGTCAGACGTGCCTAAAACGACATTTAGAATGCGTTATGAACATTATGAGTTCTTGGTGATGTCTTTTGGATTAACCAACACCCAAGCAACTTTTATGGACCTAATCAATCAAGTGTTTCACCACTATTTAGATCAGTTTGTTATTGTCTTCATCAGCGACATTTTAGTTTACTCTCCAGATGCAAAGAGACACGTATAA

Protein sequence

MDFLIKYHVALDYSNKEIILRNPGKFEIKLVGKEVDEERTYAYLARTVVTQAPQTEPSKVPIICEYLDVYPEELSGLPSKREIKFTIDVAPGTTPISQTPYRMAPPSELKESKNQLEELIEKGYIRPSTSPWGAHVLFVKKKDGSMRLCIDYQQLNKVTIKNMYPLLQIINDLFYQLKGASVFSKIELYSGYHQLRIKKSDVPKTTFRMRYEHYEFLVMSFGLTNTQATFMDLINQVFHHYLDQFVIVFISDILVYSPDAKRHV

Homology

[Close]

BLAST of Cmc04g0104381 vs. NCBI nr
Match: TYK27290.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 323.2 bits (827), Expect = 2.1e-84
Identity = 163/278 (58.63%), Postives = 205/278 (73.74%), Query Frame = 0


Query: 1   MDFLIKYHVALDYSNKEIILRNPGKFEIKLVGKEVDEERTY---------------AYLA 60
           MDFL  ++ ++D   KE++ R PG  E+   G      R+                A+LA
Sbjct: 477 MDFLFAHYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLA 536

Query: 61  RTVVTQAPQTEPSKVPIICEYLDVYPEELSGLPSKREIKFTIDVAPGTTPISQTPYRMAP 120
             VV Q  + +P  VP++ E+LDV+P++LSGLP  REI+FTI++ PGT PISQ PYRMA 
Sbjct: 537 HIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMA- 596

Query: 121 PSELKESKNQLEELIEKGYIRPSTSPWGAHVLFVKKKDGSMRLCIDYQQLNKVTIKNMYP 180
           PSELKE K QL+EL++KGYIRPS SPWGA VLFVKKKDG++RLCIDY+QLNKVTI+N YP
Sbjct: 597 PSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYP 656

Query: 181 LLQIINDLFYQLKGASVFSKIELYSGYHQLRIKKSDVPKTTFRMRYEHYEFLVMSFGLTN 240
           L + I+DLF QL+GA++FSKI+L SGYHQL++++SD+ KT FR RY HYEF VM FGLTN
Sbjct: 657 LPR-IDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTN 716

Query: 241 TQATFMDLINQVFHHYLDQFVIVFISDILVYSPDAKRH 264
             A FMDL+N++FH YLDQFVIVFI DILVYS D + H
Sbjct: 717 APAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESH 752

[Close]

BLAST of Cmc04g0104381 vs. NCBI nr
Match: KAA0050527.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 323.2 bits (827), Expect = 2.1e-84
Identity = 163/278 (58.63%), Postives = 205/278 (73.74%), Query Frame = 0


Query: 1   MDFLIKYHVALDYSNKEIILRNPGKFEIKLVGKEVDEERTY---------------AYLA 60
           MDFL  ++ ++D   KE++ R PG  E+   G      R+                A+LA
Sbjct: 209 MDFLFAHYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLA 268

Query: 61  RTVVTQAPQTEPSKVPIICEYLDVYPEELSGLPSKREIKFTIDVAPGTTPISQTPYRMAP 120
             VV Q  + +P  VP++ E+LDV+P++LSGLP  REI+FTI++ PGT PISQ PYRMA 
Sbjct: 269 HIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMA- 328

Query: 121 PSELKESKNQLEELIEKGYIRPSTSPWGAHVLFVKKKDGSMRLCIDYQQLNKVTIKNMYP 180
           PSELKE K QL+EL++KGYIRPS SPWGA VLFVKKKDG++RLCIDY+QLNKVTI+N YP
Sbjct: 329 PSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYP 388

Query: 181 LLQIINDLFYQLKGASVFSKIELYSGYHQLRIKKSDVPKTTFRMRYEHYEFLVMSFGLTN 240
           L + I+DLF QL+GA++FSKI+L SGYHQL++++SD+ KT FR RY HYEF VM FGLTN
Sbjct: 389 LPR-IDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTN 448

Query: 241 TQATFMDLINQVFHHYLDQFVIVFISDILVYSPDAKRH 264
             A FMDL+N++FH YLDQFVIVFI DILVYS D + H
Sbjct: 449 APAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESH 484

[Close]

BLAST of Cmc04g0104381 vs. NCBI nr
Match: KAA0066849.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 323.2 bits (827), Expect = 2.1e-84
Identity = 163/278 (58.63%), Postives = 205/278 (73.74%), Query Frame = 0


Query: 1   MDFLIKYHVALDYSNKEIILRNPGKFEIKLVGKEVDEERTY---------------AYLA 60
           MDFL  ++ ++D   KE++ R PG  E+   G      R+                A+LA
Sbjct: 548 MDFLFAHYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLA 607

Query: 61  RTVVTQAPQTEPSKVPIICEYLDVYPEELSGLPSKREIKFTIDVAPGTTPISQTPYRMAP 120
             VV Q  + +P  VP++ E+LDV+P++LSGLP  REI+FTI++ PGT PISQ PYRMA 
Sbjct: 608 HIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMA- 667

Query: 121 PSELKESKNQLEELIEKGYIRPSTSPWGAHVLFVKKKDGSMRLCIDYQQLNKVTIKNMYP 180
           PSELKE K QL+EL++KGYIRPS SPWGA VLFVKKKDG++RLCIDY+QLNKVTI+N YP
Sbjct: 668 PSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYP 727

Query: 181 LLQIINDLFYQLKGASVFSKIELYSGYHQLRIKKSDVPKTTFRMRYEHYEFLVMSFGLTN 240
           L + I+DLF QL+GA++FSKI+L SGYHQL++++SD+ KT FR RY HYEF VM FGLTN
Sbjct: 728 LPR-IDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTN 787

Query: 241 TQATFMDLINQVFHHYLDQFVIVFISDILVYSPDAKRH 264
             A FMDL+N++FH YLDQFVIVFI DILVYS D + H
Sbjct: 788 APAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESH 823

[Close]

BLAST of Cmc04g0104381 vs. NCBI nr
Match: KAA0042295.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 323.2 bits (827), Expect = 2.1e-84
Identity = 164/278 (58.99%), Postives = 204/278 (73.38%), Query Frame = 0


Query: 1   MDFLIKYHVALDYSNKEIILRNPGKFEIKLVGKEVDEERTY---------------AYLA 60
           MDFL  ++ ++D   KE++ R PG  E+   G      R+                A+LA
Sbjct: 525 MDFLFAHYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLA 584

Query: 61  RTVVTQAPQTEPSKVPIICEYLDVYPEELSGLPSKREIKFTIDVAPGTTPISQTPYRMAP 120
             VV Q  + +P  VP++ E+LDV+P +LSGLP  REI+FTI++ PGT PISQ PYRMA 
Sbjct: 585 HIVVVQREKLKPEDVPVVKEFLDVFPNDLSGLPPDREIEFTIELLPGTAPISQAPYRMA- 644

Query: 121 PSELKESKNQLEELIEKGYIRPSTSPWGAHVLFVKKKDGSMRLCIDYQQLNKVTIKNMYP 180
           PSELKE K QL+EL++KGYIRPS SPWGA VLFVKKKDG++RLCIDY+QLNKVTI+N YP
Sbjct: 645 PSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYP 704

Query: 181 LLQIINDLFYQLKGASVFSKIELYSGYHQLRIKKSDVPKTTFRMRYEHYEFLVMSFGLTN 240
           L +I  DLF QL+GA++FSKI+L SGYHQL++++SD+ KTTFR RY HYEF VM FGLTN
Sbjct: 705 LPRIY-DLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTN 764

Query: 241 TQATFMDLINQVFHHYLDQFVIVFISDILVYSPDAKRH 264
             A FMDL+N++FH YLDQFVIVFI DILVYS D + H
Sbjct: 765 APAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESH 800

[Close]

BLAST of Cmc04g0104381 vs. NCBI nr
Match: KAA0035455.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01987.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK03719.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK25877.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 323.2 bits (827), Expect = 2.1e-84
Identity = 163/278 (58.63%), Postives = 205/278 (73.74%), Query Frame = 0


Query: 1   MDFLIKYHVALDYSNKEIILRNPGKFEIKLVGKEVDEERTY---------------AYLA 60
           MDFL  ++ ++D   KE++ R PG  E+   G      R+                A+LA
Sbjct: 548 MDFLFAHYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLA 607

Query: 61  RTVVTQAPQTEPSKVPIICEYLDVYPEELSGLPSKREIKFTIDVAPGTTPISQTPYRMAP 120
             VV Q  + +P  VP++ E+LDV+P++LSGLP  REI+FTI++ PGT PISQ PYRMA 
Sbjct: 608 HIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMA- 667

Query: 121 PSELKESKNQLEELIEKGYIRPSTSPWGAHVLFVKKKDGSMRLCIDYQQLNKVTIKNMYP 180
           PSELKE K QL+EL++KGYIRPS SPWGA VLFVKKKDG++RLCIDY+QLNKVTI+N YP
Sbjct: 668 PSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYP 727

Query: 181 LLQIINDLFYQLKGASVFSKIELYSGYHQLRIKKSDVPKTTFRMRYEHYEFLVMSFGLTN 240
           L + I+DLF QL+GA++FSKI+L SGYHQL++++SD+ KT FR RY HYEF VM FGLTN
Sbjct: 728 LPR-IDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTN 787

Query: 241 TQATFMDLINQVFHHYLDQFVIVFISDILVYSPDAKRH 264
             A FMDL+N++FH YLDQFVIVFI DILVYS D + H
Sbjct: 788 APAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESH 823

[Close]

BLAST of Cmc04g0104381 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 123.2 bits (308), Expect = 4.3e-27
Identity = 82/263 (31.18%), Postives = 135/263 (51.33%), Query Frame = 0


Query: 20  LRNPG-------KFEIKLVGKEVDEERTYAYLARTVVTQAPQ-TEPSKVPIIC------- 79
           L NPG       +F I      ++E+  Y+ +  T+ +  P  T+ S     C       
Sbjct: 502 LDNPGSTQSTFAQFPIPEEASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQ 561

Query: 80  -EYLDVYPEELSGLP---SKREIKFTIDVAPGTTPISQTPYRMAPPSELKESKNQLEELI 139
            +Y ++   +L   P   +   +K  I++ PG       PY +   +E +E    +++L+
Sbjct: 562 QKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNE-QEINKIVQKLL 621

Query: 140 EKGYIRPSTSPWGAHVLFVKKKDGSMRLCIDYQQLNKVTIKNMYPLLQIINDLFYQLKGA 199
           +  +I PS SP  + V+ V KKDG+ RLC+DY+ LNK TI + +PL +I N L  ++  A
Sbjct: 622 DNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDN-LLSRIGNA 681

Query: 200 SVFSKIELYSGYHQLRIKKSDVPKTTFRMRYEHYEFLVMSFGLTNTQATFMDLINQVFHH 259
            +F+ ++L+SGYHQ+ ++  D  KT F      YE+ VM FGL N  +TF   +   F  
Sbjct: 682 QIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRD 741

Query: 260 YLDQFVIVFISDILVYSPDAKRH 264
              +FV V++ DIL++S   + H
Sbjct: 742 L--RFVNVYLDDILIFSESPEEH 760

[Close]

BLAST of Cmc04g0104381 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 123.2 bits (308), Expect = 4.3e-27
Identity = 82/263 (31.18%), Postives = 135/263 (51.33%), Query Frame = 0


Query: 20  LRNPG-------KFEIKLVGKEVDEERTYAYLARTVVTQAPQ-TEPSKVPIIC------- 79
           L NPG       +F I      ++E+  Y+ +  T+ +  P  T+ S     C       
Sbjct: 528 LDNPGSTQSTFAQFPIPEEASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQ 587

Query: 80  -EYLDVYPEELSGLP---SKREIKFTIDVAPGTTPISQTPYRMAPPSELKESKNQLEELI 139
            +Y ++   +L   P   +   +K  I++ PG       PY +   +E +E    +++L+
Sbjct: 588 QKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNE-QEINKIVQKLL 647

Query: 140 EKGYIRPSTSPWGAHVLFVKKKDGSMRLCIDYQQLNKVTIKNMYPLLQIINDLFYQLKGA 199
           +  +I PS SP  + V+ V KKDG+ RLC+DY+ LNK TI + +PL +I N L  ++  A
Sbjct: 648 DNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDN-LLSRIGNA 707

Query: 200 SVFSKIELYSGYHQLRIKKSDVPKTTFRMRYEHYEFLVMSFGLTNTQATFMDLINQVFHH 259
            +F+ ++L+SGYHQ+ ++  D  KT F      YE+ VM FGL N  +TF   +   F  
Sbjct: 708 QIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRD 767

Query: 260 YLDQFVIVFISDILVYSPDAKRH 264
              +FV V++ DIL++S   + H
Sbjct: 768 L--RFVNVYLDDILIFSESPEEH 786

[Close]

BLAST of Cmc04g0104381 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-26
Identity = 61/113 (53.98%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 145 SMRLCIDYQQLNKVTIKNMYPLLQIINDLFYQLKGASVFSKIELYSGYHQLRIKKSDVPK 204
           S+R+CIDY+ L KVTIKN YP+ + ++DLF +L  A+ F+K++L SGY Q+RI K D PK
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPR-VDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPK 64

Query: 205 TTFRMRYEHYEFLVMSFGLTNTQATFMDLINQVFHHYLDQFVIVFISDILVYS 258
           TT   RY  +EF VM FGLTN  ATF +L+N V + YLD FV+V++ D++VY+
Sbjct: 65  TTCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYT 116

[Close]

BLAST of Cmc04g0104381 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.0e-25
Identity = 69/207 (33.33%), Postives = 112/207 (54.11%), Query Frame = 0


Query: 62  IICEYLDVYPEELSGLPSKREIKFTIDVAPGTTPISQTPYRMAPPSELKESKNQLEELIE 121
           ++ E+  ++   LSG+  +  +K  I       PI    Y   P +   E + Q++EL++
Sbjct: 91  LLGEFPRIFEPPLSGMSVETAVKAEIRTNT-QDPIYAKSYPY-PVNMRGEVERQIDELLQ 150

Query: 122 KGYIRPSTSPWGAHVLFVKKK-----DGSMRLCIDYQQLNKVTIKNMYPLLQIINDLFYQ 181
            G IRPS SP+ + +  V KK     +   R+ +D+++LN VTI + YP+   IN     
Sbjct: 151 DGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPD-INATLAS 210

Query: 182 LKGASVFSKIELYSGYHQLRIKKSDVPKTTFRMRYEHYEFLVMSFGLTNTQATFMDLINQ 241
           L  A  F+ ++L SG+HQ+ +K+SD+PKT F      YEFL + FGL N  A F  +I+ 
Sbjct: 211 LGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDD 270

Query: 242 VFHHYLDQFVIVFISDILVYSPDAKRH 264
           +   ++ +   V+I DI+V+S D   H
Sbjct: 271 ILREHIGKVCYVYIDDIIVFSEDYDTH 294

[Close]

BLAST of Cmc04g0104381 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.8e-24
Identity = 65/213 (30.52%), Postives = 116/213 (54.46%), Query Frame = 0


Query: 56  EPSKVPIICEYLDVYPE-ELSGLPSK-REIKFTIDVAPGT--TPISQTPYRMAPPSELKE 115
           EP    I  E+ D+  E     LP   + ++F +++       PI   P    PP +++ 
Sbjct: 371 EPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYP---LPPGKMQA 430

Query: 116 SKNQLEELIEKGYIRPSTSPWGAHVLFVKKKDGSMRLCIDYQQLNKVTIKNMYPLLQIIN 175
             +++ + ++ G IR S +     V+FV KK+G++R+ +DY+ LNK    N+YP L +I 
Sbjct: 431 MNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYP-LPLIE 490

Query: 176 DLFYQLKGASVFSKIELYSGYHQLRIKKSDVPKTTFRMRYEHYEFLVMSFGLTNTQATFM 235
            L  +++G+++F+K++L S YH +R++K D  K  FR     +E+LVM +G++   A F 
Sbjct: 491 QLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQ 550

Query: 236 DLINQVFHHYLDQFVIVFISDILVYSPDAKRHV 265
             IN +     +  V+ ++ DIL++S     HV
Sbjct: 551 YFINTILGEAKESHVVCYMDDILIHSKSESEHV 579

[Close]

BLAST of Cmc04g0104381 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.0e-84
Identity = 163/278 (58.63%), Postives = 205/278 (73.74%), Query Frame = 0


Query: 1   MDFLIKYHVALDYSNKEIILRNPGKFEIKLVGKEVDEERTY---------------AYLA 60
           MDFL  ++ ++D   KE++ R PG  E+   G      R+                A+LA
Sbjct: 510 MDFLFAHYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLA 569

Query: 61  RTVVTQAPQTEPSKVPIICEYLDVYPEELSGLPSKREIKFTIDVAPGTTPISQTPYRMAP 120
             VV Q  + +P  VP++ E+LDV+P++LSGLP  REI+FTI++ PGT PISQ PYRMA 
Sbjct: 570 HIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMA- 629

Query: 121 PSELKESKNQLEELIEKGYIRPSTSPWGAHVLFVKKKDGSMRLCIDYQQLNKVTIKNMYP 180
           PSELKE K QL+EL++KGYIRPS SPWGA VLFVKKKDG++RLCIDY+QLNKVTI+N YP
Sbjct: 630 PSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYP 689

Query: 181 LLQIINDLFYQLKGASVFSKIELYSGYHQLRIKKSDVPKTTFRMRYEHYEFLVMSFGLTN 240
           L + I+DLF QL+GA++FSKI+L SGYHQL++++SD+ KT FR RY HYEF VM FGLTN
Sbjct: 690 LPR-IDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTN 749

Query: 241 TQATFMDLINQVFHHYLDQFVIVFISDILVYSPDAKRH 264
             A FMDL+N++FH YLDQFVIVFI DILVYS D + H
Sbjct: 750 APAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESH 785

[Close]

BLAST of Cmc04g0104381 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.0e-84
Identity = 163/278 (58.63%), Postives = 205/278 (73.74%), Query Frame = 0


Query: 1   MDFLIKYHVALDYSNKEIILRNPGKFEIKLVGKEVDEERTY---------------AYLA 60
           MDFL  ++ ++D   KE++ R PG  E+   G      R+                A+LA
Sbjct: 548 MDFLFAHYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLA 607

Query: 61  RTVVTQAPQTEPSKVPIICEYLDVYPEELSGLPSKREIKFTIDVAPGTTPISQTPYRMAP 120
             VV Q  + +P  VP++ E+LDV+P++LSGLP  REI+FTI++ PGT PISQ PYRMA 
Sbjct: 608 HIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMA- 667

Query: 121 PSELKESKNQLEELIEKGYIRPSTSPWGAHVLFVKKKDGSMRLCIDYQQLNKVTIKNMYP 180
           PSELKE K QL+EL++KGYIRPS SPWGA VLFVKKKDG++RLCIDY+QLNKVTI+N YP
Sbjct: 668 PSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYP 727

Query: 181 LLQIINDLFYQLKGASVFSKIELYSGYHQLRIKKSDVPKTTFRMRYEHYEFLVMSFGLTN 240
           L + I+DLF QL+GA++FSKI+L SGYHQL++++SD+ KT FR RY HYEF VM FGLTN
Sbjct: 728 LPR-IDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTN 787

Query: 241 TQATFMDLINQVFHHYLDQFVIVFISDILVYSPDAKRH 264
             A FMDL+N++FH YLDQFVIVFI DILVYS D + H
Sbjct: 788 APAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESH 823

[Close]

BLAST of Cmc04g0104381 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.0e-84
Identity = 163/278 (58.63%), Postives = 205/278 (73.74%), Query Frame = 0


Query: 1   MDFLIKYHVALDYSNKEIILRNPGKFEIKLVGKEVDEERTY---------------AYLA 60
           MDFL  ++ ++D   KE++ R PG  E+   G      R+                A+LA
Sbjct: 548 MDFLFAHYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLA 607

Query: 61  RTVVTQAPQTEPSKVPIICEYLDVYPEELSGLPSKREIKFTIDVAPGTTPISQTPYRMAP 120
             VV Q  + +P  VP++ E+LDV+P++LSGLP  REI+FTI++ PGT PISQ PYRMA 
Sbjct: 608 HIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMA- 667

Query: 121 PSELKESKNQLEELIEKGYIRPSTSPWGAHVLFVKKKDGSMRLCIDYQQLNKVTIKNMYP 180
           PSELKE K QL+EL++KGYIRPS SPWGA VLFVKKKDG++RLCIDY+QLNKVTI+N YP
Sbjct: 668 PSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYP 727

Query: 181 LLQIINDLFYQLKGASVFSKIELYSGYHQLRIKKSDVPKTTFRMRYEHYEFLVMSFGLTN 240
           L + I+DLF QL+GA++FSKI+L SGYHQL++++SD+ KT FR RY HYEF VM FGLTN
Sbjct: 728 LPR-IDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTN 787

Query: 241 TQATFMDLINQVFHHYLDQFVIVFISDILVYSPDAKRH 264
             A FMDL+N++FH YLDQFVIVFI DILVYS D + H
Sbjct: 788 APAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESH 823

[Close]

BLAST of Cmc04g0104381 vs. ExPASy TrEMBL
Match: A0A5A7T1Y5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00980 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.0e-84
Identity = 163/278 (58.63%), Postives = 205/278 (73.74%), Query Frame = 0


Query: 1   MDFLIKYHVALDYSNKEIILRNPGKFEIKLVGKEVDEERTY---------------AYLA 60
           MDFL  ++ ++D   KE++ R PG  E+   G      R+                A+LA
Sbjct: 548 MDFLFAHYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLA 607

Query: 61  RTVVTQAPQTEPSKVPIICEYLDVYPEELSGLPSKREIKFTIDVAPGTTPISQTPYRMAP 120
             VV Q  + +P  VP++ E+LDV+P++LSGLP  REI+FTI++ PGT PISQ PYRMA 
Sbjct: 608 HIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMA- 667

Query: 121 PSELKESKNQLEELIEKGYIRPSTSPWGAHVLFVKKKDGSMRLCIDYQQLNKVTIKNMYP 180
           PSELKE K QL+EL++KGYIRPS SPWGA VLFVKKKDG++RLCIDY+QLNKVTI+N YP
Sbjct: 668 PSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYP 727

Query: 181 LLQIINDLFYQLKGASVFSKIELYSGYHQLRIKKSDVPKTTFRMRYEHYEFLVMSFGLTN 240
           L + I+DLF QL+GA++FSKI+L SGYHQL++++SD+ KT FR RY HYEF VM FGLTN
Sbjct: 728 LPR-IDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTN 787

Query: 241 TQATFMDLINQVFHHYLDQFVIVFISDILVYSPDAKRH 264
             A FMDL+N++FH YLDQFVIVFI DILVYS D + H
Sbjct: 788 APAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESH 823

[Close]

BLAST of Cmc04g0104381 vs. ExPASy TrEMBL
Match: A0A5A7T3K4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold510G00170 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.0e-84
Identity = 163/278 (58.63%), Postives = 205/278 (73.74%), Query Frame = 0


Query: 1   MDFLIKYHVALDYSNKEIILRNPGKFEIKLVGKEVDEERTY---------------AYLA 60
           MDFL  ++ ++D   KE++ R PG  E+   G      R+                A+LA
Sbjct: 149 MDFLFAHYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLA 208

Query: 61  RTVVTQAPQTEPSKVPIICEYLDVYPEELSGLPSKREIKFTIDVAPGTTPISQTPYRMAP 120
             VV Q  + +P  VP++ E+LDV+P++LSGLP  REI+FTI++ PGT PISQ PYRMA 
Sbjct: 209 HIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMA- 268

Query: 121 PSELKESKNQLEELIEKGYIRPSTSPWGAHVLFVKKKDGSMRLCIDYQQLNKVTIKNMYP 180
           PSELKE K QL+EL++KGYIRPS SPWGA VLFVKKKDG++RLCIDY+QLNKVTI+N YP
Sbjct: 269 PSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYP 328

Query: 181 LLQIINDLFYQLKGASVFSKIELYSGYHQLRIKKSDVPKTTFRMRYEHYEFLVMSFGLTN 240
           L + I+DLF QL+GA++FSKI+L SGYHQL++++SD+ KT FR RY HYEF VM FGLTN
Sbjct: 329 LPR-IDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTN 388

Query: 241 TQATFMDLINQVFHHYLDQFVIVFISDILVYSPDAKRH 264
             A FMDL+N++FH YLDQFVIVFI DILVYS D + H
Sbjct: 389 APAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESH 424

The following BLAST results are available for this feature:

BLAST of Cmc04g0104381 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27290.1	2.1e-84	58.63	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0050527.1	2.1e-84	58.63	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0066849.1	2.1e-84	58.63	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0042295.1	2.1e-84	58.99	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0035455.1	2.1e-84	58.63	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1...	[more]

BLAST of Cmc04g0104381 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	4.3e-27	31.18	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	4.3e-27	31.18	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P31843	1.2e-26	53.98	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q8I7P9	4.0e-25	33.33	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P0CT41	5.8e-24	30.52	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc04g0104381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U2V7	1.0e-84	58.63	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BS67	1.0e-84	58.63	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]
A0A5D3BHI1	1.0e-84	58.63	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1Y5	1.0e-84	58.63	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold43...	[more]
A0A5A7T3K4	1.0e-84	58.63	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold51...	[more]

BLAST of Cmc04g0104381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 139..263 e-value: 2.9E-8 score: 33.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 164..264 e-value: 1.6E-60 score: 206.1
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 83..225 e-value: 1.6E-60 score: 206.1
None	No IPR available	PANTHER	PTHR24559:SF382	SUBFAMILY NOT NAMED	coord: 172..235 coord: 44..170
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 172..235 coord: 44..170
None	No IPR available	CDD	cd01647	RT_LTR	coord: 123..264 e-value: 5.40366E-61 score: 188.573
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 62..263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0104381.1	Cmc04g0104381.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding