Cmc04g0103791 (gene) Melon (Charmono) v1.1

Overview
NameCmc04g0103791
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotransposon protein
LocationCMiso1.1chr04: 21021429 .. 21022079 (+)
RNA-Seq ExpressionCmc04g0103791
SyntenyCmc04g0103791
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCAAACATTCGCAATTCTATACCATTTACTTAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATACAACGAGAATTTGTACGCTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATCATAGAAGTTCACTATAATTGACCTTTAAGTACATCGCAGTTAATTCATCGTGTTTCTTTCAACCTGCAGAATTGCCTAGGCGCGTTAGACGGGACGTACATAAAGGTCAACGTCCCCGTAGGAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTGCCACAAACATTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGACGCGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTCTTTATAA

mRNA sequence

ATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCAAACATTCGCAATTCTATACCATTTACTTAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATACAACGAGAATTTGTACGCTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGAATTGCCTAGGCGCGTTAGACGGGACGTACATAAAGGTCAACGTCCCCGTAGGAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTGCCACAAACATTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGACGCGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTCTTTATAA

Coding sequence (CDS)

ATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCAAACATTCGCAATTCTATACCATTTACTTAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATACAACGAGAATTTGTACGCTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGAATTGCCTAGGCGCGTTAGACGGGACGTACATAAAGGTCAACGTCCCCGTAGGAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTGCCACAAACATTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGACGCGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTCTTTATAA

Protein sequence

MIHESDLVCRQSTRMDRQTFAILYHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPVGDRPTFRTRKGEIATNILGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGISSL
Homology
[Close]
BLAST of Cmc04g0103791 vs. NCBI nr
Match: KAA0062587.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 337.0 bits (863), Expect = 9.5e-89
Identity = 167/172 (97.09%), Postives = 170/172 (98.84%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRQTFAILYHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDR+TFAIL HLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPVGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVP GDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGEIATNILGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
           TRKGEIATN+LGVCDTKGDFVYVLAGWEGSAADS+ILRDAISRENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSQILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc04g0103791 vs. NCBI nr
Match: KAA0051443.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 336.3 bits (861), Expect = 1.6e-88
Identity = 167/172 (97.09%), Postives = 170/172 (98.84%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRQTFAILYHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MI+ESDLVCRQSTRMDR+TFAIL HLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIYESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPVGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVP GDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPTGDRPTFR 145

Query: 121 TRKGEIATNILGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
           TRKGEIATN+LGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc04g0103791 vs. NCBI nr
Match: KAA0036923.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 335.9 bits (860), Expect = 2.1e-88
Identity = 166/172 (96.51%), Postives = 170/172 (98.84%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRQTFAILYHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDR+TFAIL HLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPVGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEEL+KRPVPNCLGALDGTYIKVNVP GDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELMKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGEIATNILGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
           TRKGEIATN+LGVCDTKGDFVYVLAGWEGSAADSRILRDAIS+ENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 197

[Close]
BLAST of Cmc04g0103791 vs. NCBI nr
Match: KAA0068154.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 335.9 bits (860), Expect = 2.1e-88
Identity = 172/186 (92.47%), Postives = 172/186 (92.47%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRQTFAILYHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDRQTFAILYHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRQTFAILYHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVP--------------NCLGALDGTY 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVP              NCLGALDGTY
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTY 145

Query: 121 IKVNVPVGDRPTFRTRKGEIATNILGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENG 173
           IKVNVPVGDRPTFRTRKGEIATNILGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENG
Sbjct: 146 IKVNVPVGDRPTFRTRKGEIATNILGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENG 205

[Close]
BLAST of Cmc04g0103791 vs. NCBI nr
Match: KAA0062150.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 332.0 bits (850), Expect = 3.1e-87
Identity = 165/172 (95.93%), Postives = 169/172 (98.26%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRQTFAILYHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVC QSTRMDR+TFAIL HLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCLQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPVGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKV+VP GDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVSVPAGDRPTFR 145

Query: 121 TRKGEIATNILGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
           TRKGEIAT++LGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG
Sbjct: 146 TRKGEIATDVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc04g0103791 vs. ExPASy TrEMBL
Match: A0A5A7V6J9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00810 PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.6e-89
Identity = 167/172 (97.09%), Postives = 170/172 (98.84%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRQTFAILYHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDR+TFAIL HLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPVGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVP GDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGEIATNILGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
           TRKGEIATN+LGVCDTKGDFVYVLAGWEGSAADS+ILRDAISRENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSQILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc04g0103791 vs. ExPASy TrEMBL
Match: A0A5A7U6C1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001970 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 7.9e-89
Identity = 167/172 (97.09%), Postives = 170/172 (98.84%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRQTFAILYHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MI+ESDLVCRQSTRMDR+TFAIL HLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIYESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPVGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVP GDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPTGDRPTFR 145

Query: 121 TRKGEIATNILGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
           TRKGEIATN+LGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc04g0103791 vs. ExPASy TrEMBL
Match: A0A5A7T1V5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00150 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.0e-88
Identity = 166/172 (96.51%), Postives = 170/172 (98.84%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRQTFAILYHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDR+TFAIL HLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPVGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEEL+KRPVPNCLGALDGTYIKVNVP GDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELMKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGEIATNILGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
           TRKGEIATN+LGVCDTKGDFVYVLAGWEGSAADSRILRDAIS+ENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 197

[Close]
BLAST of Cmc04g0103791 vs. ExPASy TrEMBL
Match: A0A5A7VL61 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001220 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.0e-88
Identity = 172/186 (92.47%), Postives = 172/186 (92.47%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRQTFAILYHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDRQTFAILYHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRQTFAILYHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVP--------------NCLGALDGTY 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVP              NCLGALDGTY
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTY 145

Query: 121 IKVNVPVGDRPTFRTRKGEIATNILGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENG 173
           IKVNVPVGDRPTFRTRKGEIATNILGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENG
Sbjct: 146 IKVNVPVGDRPTFRTRKGEIATNILGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENG 205

[Close]
BLAST of Cmc04g0103791 vs. ExPASy TrEMBL
Match: A0A5A7V4C6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005200 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.5e-87
Identity = 165/172 (95.93%), Postives = 169/172 (98.26%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRQTFAILYHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVC QSTRMDR+TFAIL HLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCLQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPVGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKV+VP GDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVSVPAGDRPTFR 145

Query: 121 TRKGEIATNILGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
           TRKGEIAT++LGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG
Sbjct: 146 TRKGEIATDVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc04g0103791 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 118.6 bits (296), Expect = 5.0e-27
Identity = 66/177 (37.29%), Postives = 99/177 (55.93%), Query Frame = 0 

Query: 9   CRQSTRMDRQTFAILYHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 68
           C ++ RMD+  F  L  LL+    L  T  + +E  +A+FL ++ H+++ R +Q  F  S
Sbjct: 42  CFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYS 101

Query: 69  GETVSRHFNIVLLAVLRLYEELIKRPVPN-------------CLGALDGTYIKVNVPVGD 128
           GET+SRHFN VL AV+ + ++   +P  N             C+G +D  +I V V V +
Sbjct: 102 GETISRHFNNVLNAVIAISKDFF-QPNSNSDTLENDDPYFKDCVGVVDSFHIPVMVGVDE 161

Query: 129 RPTFRTRKGEIATNILGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
           +  FR   G +  N+L        F YVLAGWEGSA+D ++L  A++R N LQVP+G
Sbjct: 162 QGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQG 217

[Close]
BLAST of Cmc04g0103791 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 81.3 bits (199), Expect = 8.8e-16
Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 0 

Query: 97  NCLGALDGTYIKVNVPVGDRPTFRTRKGEIATNILGVCDTKGDFVYVLAGWEGSAADSRI 156
           +C+GA+D T+I   V     P+FR RKG+I+ N+L  C+   +F+YVL+GWEGSA DS++
Sbjct: 24  DCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSKV 83

Query: 157 LRDAISR-ENGLQVPK 172
           L DA++R  N L VP+
Sbjct: 84  LNDALTRNSNRLPVPE 99

[Close]
BLAST of Cmc04g0103791 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 78.2 bits (191), Expect = 7.4e-15
Identity = 55/190 (28.95%), Postives = 84/190 (44.21%), Query Frame = 0 

Query: 2   IHESDLVCRQSTRMDRQTFAILYHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVI 61
           + +    C Q  RM    F  L ++L+    L  T  + +EE VAMFL +  H+   R +
Sbjct: 59  LQQDAAACLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDV 118

Query: 62  QREFVRSGETVSRHFNIVLLAVLRLYEELIKRP-------VPNCL--------------G 121
              F R+ ETV R F  VL A   L  + I+ P       +P  L              G
Sbjct: 119 GLRFGRNQETVQRKFREVLTATELLACDYIRTPTRQELYRIPERLQVDQRYWPYFSGFVG 178

Query: 122 ALDGTYIKVNVPVGDRPTFRTRKGEIATNILGVCDTKGDFVYVLAGWEGSAADSRILRDA 171
           A+DGT++ V V    +  +  R    + NI+ +CD K  F Y+  G  GS  D+ +L+ A
Sbjct: 179 AMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQIA 238

[Close]
BLAST of Cmc04g0103791 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-13
Identity = 51/169 (30.18%), Postives = 79/169 (46.75%), Query Frame = 0 

Query: 2   IHESDLVCRQSTRMDRQTFAILYHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVI 61
           I+ +++ C+   RM  + F  L  +L    GL S+  + ++E VA+FL + A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 62  QREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPVGDRPTFRT 121
              F  + ET+ R F+ VL A+ RL  E I+   P  +  L     ++       P    
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERLAVEYIR---PRKVEELRAISNRLQDDTRYWPFLMD 136

Query: 122 RKGEIATNILGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVP 171
             G  + N+L +CD    F Y   G  GS  D+R+L  AIS +    VP
Sbjct: 137 LLGIASFNVLAICDLDMLFTYCFVGMAGSTHDARVLSAAISDDPLFHVP 182

The following BLAST results are available for this feature:
BLAST of Cmc04g0103791 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062587.19.5e-8997.09retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0051443.11.6e-8897.09retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0036923.12.1e-8896.51retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0068154.12.1e-8892.47retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0062150.13.1e-8795.93retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Cmc04g0103791 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc04g0103791 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V6J94.6e-8997.09Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U6C17.9e-8997.09Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7T1V51.0e-8896.51Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VL611.0e-8892.47Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7V4C61.5e-8795.93Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Cmc04g0103791 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G41980.15.0e-2737.29CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
AT5G28950.18.8e-1648.68unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G43722.17.4e-1528.95unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G28730.11.8e-1330.18unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027806Harbinger transposase-derived nuclease domainPFAMPF13359DDE_Tnp_4coord: 102..159
e-value: 5.9E-7
score: 29.3
NoneNo IPR availablePANTHERPTHR22930:SF216OS11G0577650 PROTEINcoord: 1..168
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 1..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc04g0103791.1Cmc04g0103791.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0046872 metal ion binding