Cmc04g0099401 (gene) Melon (Charmono) v1.1

Overview
NameCmc04g0099401
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionphotosystem I reaction center subunit VI, chloroplastic
LocationCMiso1.1chr04: 15106661 .. 15112373 (-)
RNA-Seq ExpressionCmc04g0099401
SyntenyCmc04g0099401
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCCAAGATCCTATTTCGCCACGTGTCAATGGAAAATCCAATCAACAAAATCGAAAATCCCATTTGAAGCCTCACTTCCTCCCTCAGCCTCACTTTGCTACTCCAAATTTGTTCCTTTCCAAACCAAAGGCAGGCAACAATGGCTTCCTTAGCAACATTAGCTGCCGTTCAACCGGCCACCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGAGCCAAGCTCCCTCTCAGACCATCTCGCCAGAGCTTCAGACCAAAAAACTTCAAGTACCAAAAACCTCTCTATTTCTGTTTTTTTTTTTTTTTTTTTTATTTATTTATTTATTTATAAAATTGTGGAGGGTTTTTTATTTTTCTTGTTTCTGTTACTCTCTGTTTCAGGGCTGGTGCTGTTGTTGCTAAGTATGGTGACAAAAGTGTTTACTTTGATTTGGAGGACTTGGGCAACACTACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCATACAATTCTCTTCAGGTTTCTAACTCATTGTATTGCTTTAATGAACTCTAATCATTTTCATTGTGTATGGAAGTGATTTTAAATCAAAGAGCGTTTTGAAAACTGAGTTGCTTATTATAGTAAGTCGATTTTAATAGTTAGTGTTAAGTGTTGGTAGAAAATAGTAAACATAGTAAGTAAGAGAGAAACAAAGGATGAGTAAAAAATAGTGAACACCGCACGAAATATCAACATGAAATAGAAACATCGTAGTTAATTGCAAGTTATAATCGTCTAAAAAATTCATTATTATTATAATTGGAGTCGGAAACATGGATTGAGTTATAATAGCAAACACCTACTTAGTAGTTTAAGTAAAAATACTTCCATTATAATCACTTTTTTAGTGCTTTCCTGACATGTGAAAAGTTCTTTATAAGCTCTTCATAAAGAATATCTTGTATTAGCATTTTTAACACAATTCAGTCCAATTATATATAATGATTTTGAGGGGGGAAGTACTTTTGAGTAAGGCACAAGTGATTTGGCAGGGGTTGAAGTAAAGGTTTATATTGCGACTGACTTATTTCGGTACATTTTGTAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTACTAGGTGGTGGTGCTACTTTAGCTTATTACAGTGCTACTGCCCCAGATGATGTTCTTCCCATTAAGAAAGGACCTCAACTTCCACCGAAACTTGGGCCACGTGGCAAGATCTAATCCGCTTTTGAATCTTCTCGTTTTCTGGGGTTTTTGTTGTATGTAAATCTTCTCTCTTAACTCTCCTTCCCAGTATGTTTCAAATATACCGTATAGGAGTGTTATTTGAGCAATTGTTATTATGTGATGAATGTACTTTTACAAAGTGGTCTTGCCAGTTTCTTTAAAAGACTGATAAAGATATGGGTTAAAAAGACTTAACTCTTTCTAACAAAATTTACTTATAGATACCCCTGTTGCAGAAGAACCATATTAAAAATACTCCAAAACCAAATGAATTGTGCTCATCCTTCATATTTACAACACGAATGAATTGAATGGACTTGGTAATTACAGTTCTAAAGAAAAACTCGGTCAAAAGGAGGTTGAGCTTTTAACTGTGTTCTTCTGTTATGCCCTCTCTTCTCGAGTCAATGTCGTGCCGTGGGGCTTTTCAAGCCACCTATGTTCTCAAGGTAGGAGACCAATTTGTTATTGGTCACTATGTTTTGAAGCTTGTGCACATGCTTCACTTCACCTTCTGTTGATAAGTTATCGGAATTCGCTGGTGGTGACTCCTTCTTTACCTCATTATCAGCAATATCTGGACCCCAATTCATGAAATCCAATAGTGTCATTGAAGTAGGTGTCTCTGCAGCATTTTGTGTTTCTTCTCCGGGTGGAAACTTATCCGTCCCCGACGATACTGGGTTTTCCCGTGAAGGGTTCTTCTTACCTGATGCTTGTGATGGATTTTGAGCAACGTAATCTGCATAGAGTACATCCTCAATCCTTGACATCACTGTGAAGGCCAAGCTTTCAAGGATTCTGGAGTAACTCTCTAGAACAGCTTGTCCAACATCCTGTAAATACAGAGAAGCAGTCTTGCAATAGTTCAAATTTACACAATAACATAAAATTAGAGAATAGTGCAAATACAAACAGAACTGTTCTCGGATTTCAGCCTCCTCAAGATTTTAAACAAAGGACTTTCCAAAAAAACATGTTTTGTACCCGATTGTATTGGATTTTGCTAATGTCTAATGCTGATTGAGGAGTGCCTGGGAAACGATGTTTGAGGATGAGTAAAATTGTTTCCGCTCTCTCCTCGAAAAGCTCTCGCTTCTCCAAGCTTACAGCTGAGCCCCAAGCAGATTTTCCATCTTTCTGGTTCATTTTCCTCTTCCATATCACAATGGAAGCCTCAATTCTATCCTTTAGATCTAGGATTTTGTGCTCTGAAGATAAATCCATGGTAGACAGAAACTGATCCGGGTCAAAGAATTCAACCGTTATGTTTCTGTAGATAGAGTCTCCAAGGCTTTCCCTTCCATTCTGCAAATGAATATTCAATCAGAAAAATAAGAGCATTCGCGATATCAAGTACTTGTTCGGGTAAAATTTTGTTCACCTTAGGCAATGATTCAATGTAGTTTTCTGGGATCTCCATTTCTGATAGAACTTGTGCATTTATAGCCATGGCTGCTTTAAGGACTTGGTTTACACAATCCTTTTGATACTGCATAAATTTCCTTGAGTTTTCAGATAAACCATTTGTAGGAACTTTAGGAGTAGGTAGCCACCATTTGTCATCTTTTCGTTTTGAAGCGTTGTCTTTATTTGAATCATTAGAATCTCTGGATACATAGTAGAACTCGGATTGGTCCTTAAAATTATCCAAACAATCCTACGCATCATGTGAAACCATTAGAGAGATTCATGTATCATTTCCAAAGAAAACCAAGAAATCTTATAAAACAGGAAATAAAGAAAGTAGAGCAAGATTAGCAATCTTTTCCTACAATAAGCATGGCATCAAGCTTCCGCAGTGCTGGGATGTTCATGTGAAGATCGTTGCGTTGACGGGTAACCATGATCTGTTAAATCAAAGAGCGTAAAGTGTATTATGGTCAGTAATTTCATTTTCTTGCACTTCTGCTTGTTTTTGTTTTGAAGATCAGAGAGAGAGAGAGAGATTATTGCCTCCATGTTTGTTCCATCCTTAGATTTCTGTTGGGAAGGAACAAATTCAACAATGTAATCAGTTACTGATAATAGCAAATCAATCTCTTTTCTCCACCTTGCTTTTCGCTCTACTGACATCGGCTCAAGACGCCATTGTTCCCCAAACACAGAAGCTACAAAATGATAGGAGAAAAATGAAAAAAAGATCATCTCTTGACAATCTCCCTAGATTAAACTAGAAAATTTGTTAAGATTTTGCCCTGAATTATGTTTCTAATTACAGGGTTTCTTCCTTTAACCACATCTAGACGAAAACACAGTAAAACCAACGTCGTTTTAATTCTCGTTAGAAAACAGAAGATCAATACACGATGACGTACCTGCAAGATTTGTAATTGCATTCGACAAAGCTAAAGCTGATGAAACACCCTTTCCTCCACCAGACATATCTTCACCCAAAAGCAACTTAGCAAACCGCTCCTTCATCTGTTCTATTTCTGATCATATCCAAGAACAGAAAATTTTCAAACCAAGCTCAAGAATGGTCTTTTAATTCATACAAAACAATAATACAGGTTGACTTTTCATATGCAATTAAATGGCTCAAATCCATTTCTGAGTTTAAGTTTAGGATTCGACATCGAAATGTTGAGAAAATTTTCTTTCCAAGATGTAATGAAAATGTCAACCATATGAATAAAAATATCAATAATGATGTTCACAACTCATTTGAGTAGTAAAAAGCTATGGTTTATTAATTCAAATACTTCTCTAGGACGCCCATTATCCTTTTCTCAAAATCATTTCAATCAAAATCTCCACTCCAAACATCATCAAACATTCCAAAAACAGAAAAAAAAAATATTTATTTGAGAACCTGTTGGTGGCTGATCTTTAGGCTGTTTGATTGCAGCATCATCTCTGGAAAGCTTAGCTTTAGGCCCTTTGTCTTGTCGACTCATAGGAGGTTTTTCTGCAATGTTATCACTTATCGGAGTCGATCCCTGACTTCTGTTGGAAAACAAATCATTATTATCTGAAGAAAACAGGACACTTGCACTCTCCATGCTCAAGCTTTTGGAGTGTTTGGTTGCATTATTATTCTCCTGCATTGCTTTGAAATGGAACAATTTGGACCTGTAATTCTCTTCATCTTGTTCCATTTCTCGTACCATCTTCAGCTTTTTGATGAATCTTTTGATAGAATAAACGAGAGAGAACAAACCAGCAATCTTGACTGACCTGAAAAAACAAAGTTCATAGAAAAAGAACAAAGGACAAAAAGAGCCTTAAGCTTAATCAAATTTCCACAATTAGAACATAAAAAAAAAACAAAGAATAAGTTGGATTCGGTTTTGGTTTTGGTTTTGGTTTTGTGGGGGTTTTTTGTTTTTGAACTGAAATGGAAGAAAGTGGGTTACATGCAAGGTTTGATAGATTTGTTGAGAGATGGTTTAAGAATCGAGAGAAAATAGAGAAGGGAATTGATGATTGGTGTTTGTTTGTTTGTTAGTTTTTTTTTTTTTTTTAGATCTTTTTGTTAATTATTGTTGTTGGTGGGATTATGGATGGTTGTGGTTTTTCATTGGAAGGTCAAAGGTTCCTAAAAACAGGAGAAGACAGACATGCTTGCATGCCTAACCACCATTTTTTTCTCTAAAACTCACAGCTCAGATCTTAAGAACCAATGGTAACTTCTTGTTTCCTCTTCTATTTTCACGACATTGTACAAAATTATGTACTTGTTTTTGCTAAATATATTTGTTTTTCTGTTGTAACTAATCATTATCTGTTTGGTTTTGGGTTGGATGGTAATTTCCTGTTTGACCTTAGTTTGAAGGGGATTTGACAACATTTGTCCTCAAATTGTGGGAATTAGAAAATCATACCATTGATTGGGTTGAAACTTCCTTGACCATATTTGATGAACATTAGGCTAAAAGGAATGATGGATTTACTTGAAAAGAAGCTTTGTCCACATTATTCATGTCATTCAAAAGATTTATTTCTCATTTTATCTTTTATTTAAGTTCTAAAATCAAACTTACGAGGAGTTTTAGATGAGACTACAACATTTGATCTAGCATGTTGCATGTTATTGAAGACTTAATAATATACTTTGGTATTAGGTAATCTGAAAACATAAATTAAAAAACGAGGAGTTTAATAGAAATCGAGTTGTATGATATGTTTTCATATATGTGTTCAGTAATAGATTTTAAAATATATGTCCTAAATGTTTTTGATAATATATATTTGACTAGATAAAAAAATCGTGAAAAAATAAGTAAAAGACAATATATCTATCGTAGAAGGTCTTTTGACTGAATATTGCATATTAAATAAAATTCCACCAAAGATGACATTCTGAGTACATGATGCCAACTACTTTGTTCAATATTTGAGAATTCATATACTGTTTTACGTTACTATATAACTTTGAGACTCATCAATTTATCCTTTGTTCAACAAGAAGCTTGTATCAAACTCATCAAGTTCATCCACTTTGCT

mRNA sequence

TCTTCCAAGATCCTATTTCGCCACGTGTCAATGGAAAATCCAATCAACAAAATCGAAAATCCCATTTGAAGCCTCACTTCCTCCCTCAGCCTCACTTTGCTACTCCAAATTTGTTCCTTTCCAAACCAAAGGCAGGCAACAATGGCTTCCTTAGCAACATTAGCTGCCGTTCAACCGGCCACCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGAGCCAAGCTCCCTCTCAGACCATCTCGCCAGAGCTTCAGACCAAAAAACTTCAAGGCTGGTGCTGTTGTTGCTAAGTATGGTGACAAAAGTGTTTACTTTGATTTGGAGGACTTGGGCAACACTACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTACTAGGTGGTGGTGCTACTTTAGCTTATTACAGTGCTACTGCCCCAGATGATGTTCTTCCCATTAAGAAAGGACCTCAACTTCCACCGAAACTTGGGCCACGTGGCAAGATCTAATCCGCTTTTGAATCTTCTCGTTTTCTGGGGTTTTTGTTGTCAAAGGTTCCTAAAAACAGGAGAAGACAGACATGCTTGCATGCCTAACCACCATTTTTTTCTCTAAAACTCACAGCTCAGATCTTAAGAACCAATGGTAACTTCTTGTTTCCTCTTCTATTTTCACGACATTGTACAAAATTATGTACTTGTTTTTGCTAAATATATTTGTTTTTCTGTTGTAACTAATCATTATCTGTTTGGTTTTGGGTTGGATGGTAATTTCCTGTTTGACCTTAGTTTGAAGGGGATTTGACAACATTTGTCCTCAAATTGTGGGAATTAGAAAATCATACCATTGATTGGGTTGAAACTTCCTTGACCATATTTGATGAACATTAGGCTAAAAGGAATGATGGATTTACTTGAAAAGAAGCTTTGTCCACATTATTCATGTCATTCAAAAGATTTATTTCTCATTTTATCTTTTATTTAAGTTCTAAAATCAAACTTACGAGGAGTTTTAGATGAGACTACAACATTTGATCTAGCATGTTGCATGTTATTGAAGACTTAATAATATACTTTGGTATTAGGTAATCTGAAAACATAAATTAAAAAACGAGGAGTTTAATAGAAATCGAGTTGTATGATATGTTTTCATATATGTGTTCAGTAATAGATTTTAAAATATATGTCCTAAATGTTTTTGATAATATATATTTGACTAGATAAAAAAATCGTGAAAAAATAAGTAAAAGACAATATATCTATCGTAGAAGGTCTTTTGACTGAATATTGCATATTAAATAAAATTCCACCAAAGATGACATTCTGAGTACATGATGCCAACTACTTTGTTCAATATTTGAGAATTCATATACTGTTTTACGTTACTATATAACTTTGAGACTCATCAATTTATCCTTTGTTCAACAAGAAGCTTGTATCAAACTCATCAAGTTCATCCACTTTGCT

Coding sequence (CDS)

ATGGCTTCCTTAGCAACATTAGCTGCCGTTCAACCGGCCACCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGAGCCAAGCTCCCTCTCAGACCATCTCGCCAGAGCTTCAGACCAAAAAACTTCAAGGCTGGTGCTGTTGTTGCTAAGTATGGTGACAAAAGTGTTTACTTTGATTTGGAGGACTTGGGCAACACTACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTACTAGGTGGTGGTGCTACTTTAGCTTATTACAGTGCTACTGCCCCAGATGATGTTCTTCCCATTAAGAAAGGACCTCAACTTCCACCGAAACTTGGGCCACGTGGCAAGATCTAA

Protein sequence

MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
Homology
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BLAST of Cmc04g0099401 vs. NCBI nr
Match: XP_008447512.1 (PREDICTED: photosystem I reaction center subunit VI, chloroplastic [Cucumis melo] >KAA0050789.1 photosystem I reaction center subunit VI [Cucumis melo var. makuwa] >TYK08557.1 photosystem I reaction center subunit VI [Cucumis melo var. makuwa])

HSP 1 Score: 286.6 bits (732), Expect = 1.2e-73
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

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BLAST of Cmc04g0099401 vs. NCBI nr
Match: XP_011651500.1 (photosystem I reaction center subunit VI, chloroplastic [Cucumis sativus] >KGN58074.1 hypothetical protein Csa_023410 [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 2.3e-72
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0 

Query: 1   MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQP TVKGLGGSSLAGAKLPLRPSRQ+FRPKNFKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

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BLAST of Cmc04g0099401 vs. NCBI nr
Match: XP_022955723.1 (photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata] >XP_022979288.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 281.6 bits (719), Expect = 3.9e-72
Identity = 141/144 (97.92%), Postives = 142/144 (98.61%), Query Frame = 0 

Query: 1   MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQP TVKGLGGSSLAG KLPLRPSRQSFRPK+FKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

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BLAST of Cmc04g0099401 vs. NCBI nr
Match: KAG7018324.1 (Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.4 bits (716), Expect = 8.7e-72
Identity = 140/144 (97.22%), Postives = 142/144 (98.61%), Query Frame = 0 

Query: 1   MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQP TVKGLGGSSLAG KLPLRP+RQSFRPK+FKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

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BLAST of Cmc04g0099401 vs. NCBI nr
Match: KAG6581890.1 (Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 280.4 bits (716), Expect = 8.7e-72
Identity = 140/144 (97.22%), Postives = 142/144 (98.61%), Query Frame = 0 

Query: 1   MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQP TVKGLGGSSLAG KLPLRP+RQSFRPK+FKAGAVVAKYGDKSVYFDL
Sbjct: 468 MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 527

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT
Sbjct: 528 EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 587

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 588 APDDVLPIKKGPQLPPKLGPRGKI 611

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BLAST of Cmc04g0099401 vs. ExPASy Swiss-Prot
Match: P22179 (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAH PE=1 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.1e-61
Identity = 115/144 (79.86%), Postives = 129/144 (89.58%), Query Frame = 0 

Query: 1   MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQP T+KGL GSS+AG KL ++P+RQSF+  N ++GA+VAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120
           ED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA 
Sbjct: 61  EDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSAN 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           AP DVLPI +GPQ PPKLGPRGKI
Sbjct: 121 APQDVLPITRGPQQPPKLGPRGKI 144

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BLAST of Cmc04g0099401 vs. ExPASy Swiss-Prot
Match: Q9SUI6 (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAH2 PE=2 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.2e-61
Identity = 119/145 (82.07%), Postives = 131/145 (90.34%), Query Frame = 0 

Query: 1   MASLATLAAVQP-ATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFD 60
           MAS AT+AAVQP A VKGLGGSSLAGAKL ++PSRQSF+ K+ +AGAVVAKYGDKSVYFD
Sbjct: 1   MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
            +  DVLPIK+GPQ PPKLGPRGK+
Sbjct: 121 NSTGDVLPIKRGPQEPPKLGPRGKL 145

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BLAST of Cmc04g0099401 vs. ExPASy Swiss-Prot
Match: O04006 (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica campestris OX=3711 GN=PSAH PE=2 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 7.2e-61
Identity = 118/145 (81.38%), Postives = 131/145 (90.34%), Query Frame = 0 

Query: 1   MASLATLAAVQP-ATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFD 60
           MAS AT+AAVQP + VKGLGGSSL GAKL ++PSRQSF+PK+ +AGAVVAKYGDKSVYFD
Sbjct: 1   MASFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSA 120
           LEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           ++  DVLPIK+GPQ  PKLGPRGK+
Sbjct: 121 SSTGDVLPIKRGPQEKPKLGPRGKL 145

[Close]
BLAST of Cmc04g0099401 vs. ExPASy Swiss-Prot
Match: Q9SUI7 (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAH1 PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.2e-60
Identity = 116/145 (80.00%), Postives = 131/145 (90.34%), Query Frame = 0 

Query: 1   MASLATLAAVQP-ATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFD 60
           MASLAT+AAV+P A +KGLGGSSLAGAKL ++PSR SF+PK+ +A  VVAKYGDKSVYFD
Sbjct: 1   MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           T+  +VLPIK+GPQ PPKLGPRGK+
Sbjct: 121 TSTGEVLPIKRGPQEPPKLGPRGKL 145

[Close]
BLAST of Cmc04g0099401 vs. ExPASy Swiss-Prot
Match: A2Y7D9 (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=PSAH PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-52
Identity = 106/142 (74.65%), Postives = 117/142 (82.39%), Query Frame = 0 

Query: 4   LATLAAVQPATVKGLGGSSLAGAKLPLRPS-RQSFRPKNFKAGAVVAKYGDKSVYFDLED 63
           +A+L AVQP  VKGL GSS++G KL +RPS R   R       AVVAKYG+KSVYFDLED
Sbjct: 1   MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLED 60

Query: 64  LGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSATAP 123
           +GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLLLKFLLLGGG+ +AY SA+A 
Sbjct: 61  IGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASAS 120

Query: 124 DDVLPIKKGPQLPPKLGPRGKI 145
            D+LPIKKGPQLPP  GPRGKI
Sbjct: 121 PDLLPIKKGPQLPPTPGPRGKI 142

[Close]
BLAST of Cmc04g0099401 vs. ExPASy TrEMBL
Match: A0A5D3C9C3 (Photosystem I reaction center subunit VI OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G001000 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 5.9e-74
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]
BLAST of Cmc04g0099401 vs. ExPASy TrEMBL
Match: A0A1S3BI80 (photosystem I reaction center subunit VI, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489943 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 5.9e-74
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]
BLAST of Cmc04g0099401 vs. ExPASy TrEMBL
Match: A0A0A0LAW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G483830 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.1e-72
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0 

Query: 1   MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQP TVKGLGGSSLAGAKLPLRPSRQ+FRPKNFKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]
BLAST of Cmc04g0099401 vs. ExPASy TrEMBL
Match: A0A6J1IVS0 (photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111479056 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.9e-72
Identity = 141/144 (97.92%), Postives = 142/144 (98.61%), Query Frame = 0 

Query: 1   MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQP TVKGLGGSSLAG KLPLRPSRQSFRPK+FKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]
BLAST of Cmc04g0099401 vs. ExPASy TrEMBL
Match: A0A6J1GUS6 (photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111457635 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.9e-72
Identity = 141/144 (97.92%), Postives = 142/144 (98.61%), Query Frame = 0 

Query: 1   MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQP TVKGLGGSSLAG KLPLRPSRQSFRPK+FKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]
BLAST of Cmc04g0099401 vs. TAIR 10
Match: AT1G52230.1 (photosystem I subunit H2 )

HSP 1 Score: 235.7 bits (600), Expect = 2.3e-62
Identity = 119/145 (82.07%), Postives = 131/145 (90.34%), Query Frame = 0 

Query: 1   MASLATLAAVQP-ATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFD 60
           MAS AT+AAVQP A VKGLGGSSLAGAKL ++PSRQSF+ K+ +AGAVVAKYGDKSVYFD
Sbjct: 1   MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
            +  DVLPIK+GPQ PPKLGPRGK+
Sbjct: 121 NSTGDVLPIKRGPQEPPKLGPRGKL 145

[Close]
BLAST of Cmc04g0099401 vs. TAIR 10
Match: AT3G16140.1 (photosystem I subunit H-1 )

HSP 1 Score: 233.8 bits (595), Expect = 8.7e-62
Identity = 116/145 (80.00%), Postives = 131/145 (90.34%), Query Frame = 0 

Query: 1   MASLATLAAVQP-ATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFD 60
           MASLAT+AAV+P A +KGLGGSSLAGAKL ++PSR SF+PK+ +A  VVAKYGDKSVYFD
Sbjct: 1   MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           T+  +VLPIK+GPQ PPKLGPRGK+
Sbjct: 121 TSTGEVLPIKRGPQEPPKLGPRGKL 145

The following BLAST results are available for this feature:
BLAST of Cmc04g0099401 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008447512.11.2e-73100.00PREDICTED: photosystem I reaction center subunit VI, chloroplastic [Cucumis melo... [more]
XP_011651500.12.3e-7297.92photosystem I reaction center subunit VI, chloroplastic [Cucumis sativus] >KGN58... [more]
XP_022955723.13.9e-7297.92photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata... [more]
KAG7018324.18.7e-7297.22Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argy... [more]
KAG6581890.18.7e-7297.22Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argy... [more]
BLAST of Cmc04g0099401 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P221791.1e-6179.86Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea OX=... [more]
Q9SUI63.2e-6182.07Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thalian... [more]
O040067.2e-6181.38Photosystem I reaction center subunit VI, chloroplastic OS=Brassica campestris O... [more]
Q9SUI71.2e-6080.00Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thalian... [more]
A2Y7D91.2e-5274.65Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. i... [more]
BLAST of Cmc04g0099401 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C9C35.9e-74100.00Photosystem I reaction center subunit VI OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S3BI805.9e-74100.00photosystem I reaction center subunit VI, chloroplastic OS=Cucumis melo OX=3656 ... [more]
A0A0A0LAW41.1e-7297.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G483830 PE=3 SV=1[more]
A0A6J1IVS01.9e-7297.92photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita maxima... [more]
A0A6J1GUS61.9e-7297.92photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita moscha... [more]
BLAST of Cmc04g0099401 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G52230.12.3e-6282.07photosystem I subunit H2 [more]
AT3G16140.18.7e-6280.00photosystem I subunit H-1 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004928Photosystem I PsaH, reaction centre subunit VIPFAMPF03244PSI_PsaHcoord: 7..144
e-value: 2.7E-70
score: 234.3
IPR004928Photosystem I PsaH, reaction centre subunit VIPANTHERPTHR34787PHOTOSYSTEM I REACTION CENTER SUBUNIT VI-2, CHLOROPLASTICcoord: 1..144
NoneNo IPR availableGENE3D1.20.5.220coord: 98..120
e-value: 2.7E-10
score: 41.8
NoneNo IPR availablePANTHERPTHR34787:SF6PHOTOSYSTEM I REACTION CENTER SUBUNIT VI-1, CHLOROPLASTIC-LIKEcoord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc04g0099401.1Cmc04g0099401.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009538 photosystem I reaction center
cellular_component GO:0009522 photosystem I