Cmc04g0094161 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0094161
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr04: 6651262 .. 6652122 (+)
RNA-Seq Expression	Cmc04g0094161
Synteny	Cmc04g0094161

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAGGGATCGTAAGAACAAAACACTAGCACTGTCTCAAGCAACCTATATCGAAAAAATGTTGGTTCAATATTCGATGCAGAACTCTAAGAAGGGTTTATTACCTTTCAGGCATGAGGTTCACATGTCTAAGGAACAGTGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACGTATTCCCTATGCCTCAACTGTAGGCAGCTTAATGTATGCAATGCTCTGCACTAGGCCAGACATTTGTTATGTAGTGGGAATAGTCAGTAGGTATCAGTCCAACCCAGGGTTAGACCATTGGACGGCAGTTAAAATTATTCTCAAGTATCTTAAGAGAACGAGAGACTACATGCTTATGTATAGAGCCAAGGATTTGATCCTTACAGGATACACTGACTCTGATTTCCAAACCAATAAGGATTCTAGAAAATCTATGTCTAGATCGATGTTTACCCTGAATGGGGGAACTGTAGTTTGGTGTAGCATCAAGAAAGGATGCATTATAGACTCCACAATGGAGGCTGAATACGTCGCTGCTTGTGGAGCAGCAAAAGAAGCAGTTTGGCTTAGGAAGTTCCGACATGATTTGGAAGTTATTGCAAACATGAACTTGCCCATTACTTTATATTGTGATAACATTGGAGCAGTAGCCAATTCTAAAGAACCTTGTAGCCAAAAACGAGGGAAACACGTAGAGAGGAAGTATCACCTGATACGAGAGATTGTGCAACGAGGGGATGTGATCGTCACCAAGATCGCTTCGAAAAACAACATTGCTGATCCATTTACGAAGACTCTCACAGCTAAAGTGTTTAAGGATCATCTAGAACGTCTAGGTCTACGAGATATGTACATTAGGTAA

mRNA sequence

ATGATAAGGGATCGTAAGAACAAAACACTAGCACTGTCTCAAGCAACCTATATCGAAAAAATGTTGGTTCAATATTCGATGCAGAACTCTAAGAAGGGTTTATTACCTTTCAGGCATGAGGTTCACATGTCTAAGGAACAGTGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACGTATTCCCTATGCCTCAACTGTAGGCAGCTTAATGTATGCAATGCTCTGCACTAGGCCAGACATTTGTTATGTAGTGGGAATAGTCAGTAGGTATCAGTCCAACCCAGGGTTAGACCATTGGACGGCAGTTAAAATTATTCTCAAGTATCTTAAGAGAACGAGAGACTACATGCTTATGTATAGAGCCAAGGATTTGATCCTTACAGGATACACTGACTCTGATTTCCAAACCAATAAGGATTCTAGAAAATCTATGTCTAGATCGATGTTTACCCTGAATGGGGGAACTGTAGTTTGGTGTAGCATCAAGAAAGGATGCATTATAGACTCCACAATGGAGGCTGAATACGTCGCTGCTTGTGGAGCAGCAAAAGAAGCAGTTTGGCTTAGGAAGTTCCGACATGATTTGGAAGTTATTGCAAACATGAACTTGCCCATTACTTTATATTGTGATAACATTGGAGCAGTAGCCAATTCTAAAGAACCTTGTAGCCAAAAACGAGGGAAACACGTAGAGAGGAAGTATCACCTGATACGAGAGATTGTGCAACGAGGGGATGTGATCGTCACCAAGATCGCTTCGAAAAACAACATTGCTGATCCATTTACGAAGACTCTCACAGCTAAAGTGTTTAAGGATCATCTAGAACGTCTAGGTCTACGAGATATGTACATTAGGTAA

Coding sequence (CDS)

ATGATAAGGGATCGTAAGAACAAAACACTAGCACTGTCTCAAGCAACCTATATCGAAAAAATGTTGGTTCAATATTCGATGCAGAACTCTAAGAAGGGTTTATTACCTTTCAGGCATGAGGTTCACATGTCTAAGGAACAGTGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACGTATTCCCTATGCCTCAACTGTAGGCAGCTTAATGTATGCAATGCTCTGCACTAGGCCAGACATTTGTTATGTAGTGGGAATAGTCAGTAGGTATCAGTCCAACCCAGGGTTAGACCATTGGACGGCAGTTAAAATTATTCTCAAGTATCTTAAGAGAACGAGAGACTACATGCTTATGTATAGAGCCAAGGATTTGATCCTTACAGGATACACTGACTCTGATTTCCAAACCAATAAGGATTCTAGAAAATCTATGTCTAGATCGATGTTTACCCTGAATGGGGGAACTGTAGTTTGGTGTAGCATCAAGAAAGGATGCATTATAGACTCCACAATGGAGGCTGAATACGTCGCTGCTTGTGGAGCAGCAAAAGAAGCAGTTTGGCTTAGGAAGTTCCGACATGATTTGGAAGTTATTGCAAACATGAACTTGCCCATTACTTTATATTGTGATAACATTGGAGCAGTAGCCAATTCTAAAGAACCTTGTAGCCAAAAACGAGGGAAACACGTAGAGAGGAAGTATCACCTGATACGAGAGATTGTGCAACGAGGGGATGTGATCGTCACCAAGATCGCTTCGAAAAACAACATTGCTGATCCATTTACGAAGACTCTCACAGCTAAAGTGTTTAAGGATCATCTAGAACGTCTAGGTCTACGAGATATGTACATTAGGTAA

Protein sequence

MIRDRKNKTLALSQATYIEKMLVQYSMQNSKKGLLPFRHEVHMSKEQCPKTPQEVEDMRRIPYASTVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTAVKIILKYLKRTRDYMLMYRAKDLILTGYTDSDFQTNKDSRKSMSRSMFTLNGGTVVWCSIKKGCIIDSTMEAEYVAACGAAKEAVWLRKFRHDLEVIANMNLPITLYCDNIGAVANSKEPCSQKRGKHVERKYHLIREIVQRGDVIVTKIASKNNIADPFTKTLTAKVFKDHLERLGLRDMYIR

Homology

[Close]

BLAST of Cmc04g0094161 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 511.9 bits (1317), Expect = 3.5e-141
Identity = 252/286 (88.11%), Postives = 268/286 (93.71%), Query Frame = 0


Query: 1    MIRDRKNKTLALSQATYIEKMLVQYSMQNSKKGLLPFRHEVHMSKEQCPKTPQEVEDMRR 60
            +IRDRKNKTLALSQATYI+K+LV+YSMQNSKKGLLPFRH VH+SKEQ PKTPQEVEDMRR
Sbjct: 950  IIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRR 1009

Query: 61   IPYASTVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTAVKIILKYLKRTRDYMLMY 120
            IPYAS VGSLMYAMLCTRPDICY VGIVSRYQSNPGLDHWTAVKI+LKYL+RTRDYML+Y
Sbjct: 1010 IPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYMLVY 1069

Query: 121  RAKDLILTGYTDSDFQTNKDSRKSMSRSMFTLNGGTVVWCSIKKGCIIDSTMEAEYVAAC 180
             AKDLILTGYTDSDFQT+KDSRKS S S+FTLNGG VVW SIK+GCI DSTMEAEYVAAC
Sbjct: 1070 GAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAC 1129

Query: 181  GAAKEAVWLRKFRHDLEVIANMNLPITLYCDNIGAVANSKEPCSQKRGKHVERKYHLIRE 240
             AAKEAVWLRKF HDLEV+ NMNLPITLYCDN GAVANSKEP S KRGKH+ERKYHLIRE
Sbjct: 1130 EAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE 1189

Query: 241  IVQRGDVIVTKIASKNNIADPFTKTLTAKVFKDHLERLGLRDMYIR 287
            IVQRGDVIVTKIAS++NIADPFTKTLTAKVF+ HLE LGLRDMYIR
Sbjct: 1190 IVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 1235

[Close]

BLAST of Cmc04g0094161 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 511.9 bits (1317), Expect = 3.5e-141
Identity = 252/286 (88.11%), Postives = 269/286 (94.06%), Query Frame = 0


Query: 1    MIRDRKNKTLALSQATYIEKMLVQYSMQNSKKGLLPFRHEVHMSKEQCPKTPQEVEDMRR 60
            +IRDRKNKTLALSQATYI+K+LV+YSMQNSKKGLLPFRH VH+SKEQ PKTPQEVEDMRR
Sbjct: 950  IIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRR 1009

Query: 61   IPYASTVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTAVKIILKYLKRTRDYMLMY 120
            IPYAS VGSLMYAMLCTRPDICY VGIVSRYQSNPGLDHWTAVKIILKYL+RTRDYML+Y
Sbjct: 1010 IPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVY 1069

Query: 121  RAKDLILTGYTDSDFQTNKDSRKSMSRSMFTLNGGTVVWCSIKKGCIIDSTMEAEYVAAC 180
             AKDLILTGYT+SDFQT+KDSRKS SRS+FTLNGG VVW SIK+GCI DSTMEAEYVAAC
Sbjct: 1070 GAKDLILTGYTNSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAC 1129

Query: 181  GAAKEAVWLRKFRHDLEVIANMNLPITLYCDNIGAVANSKEPCSQKRGKHVERKYHLIRE 240
             AAKEAVWL+KF HDLEV+ NMNLPITLYCDN GAVANSKEP S KRGKH+ERKYHLIRE
Sbjct: 1130 EAAKEAVWLKKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE 1189

Query: 241  IVQRGDVIVTKIASKNNIADPFTKTLTAKVFKDHLERLGLRDMYIR 287
            IVQRGDVIVTKIAS++NIADPFTKTLTAKVF+ HLE LGLRDMYIR
Sbjct: 1190 IVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 1235

[Close]

BLAST of Cmc04g0094161 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 511.9 bits (1317), Expect = 3.5e-141
Identity = 252/286 (88.11%), Postives = 268/286 (93.71%), Query Frame = 0


Query: 1    MIRDRKNKTLALSQATYIEKMLVQYSMQNSKKGLLPFRHEVHMSKEQCPKTPQEVEDMRR 60
            +IRDRKNKTLALSQATYI+K+LV+YSMQNSKKGLLPFRH VH+SKEQ PKTPQEVEDMRR
Sbjct: 824  IIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRR 883

Query: 61   IPYASTVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTAVKIILKYLKRTRDYMLMY 120
            IPYAS VGSLMYAMLCTRPDICY VGIVSRYQSNPGLDHWTAVKI+LKYL+RTRDYML+Y
Sbjct: 884  IPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYMLVY 943

Query: 121  RAKDLILTGYTDSDFQTNKDSRKSMSRSMFTLNGGTVVWCSIKKGCIIDSTMEAEYVAAC 180
             AKDLILTGYTDSDFQT+KDSRKS S S+FTLNGG VVW SIK+GCI DSTMEAEYVAAC
Sbjct: 944  GAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAC 1003

Query: 181  GAAKEAVWLRKFRHDLEVIANMNLPITLYCDNIGAVANSKEPCSQKRGKHVERKYHLIRE 240
             AAKEAVWLRKF HDLEV+ NMNLPITLYCDN GAVANSKEP S KRGKH+ERKYHLIRE
Sbjct: 1004 EAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE 1063

Query: 241  IVQRGDVIVTKIASKNNIADPFTKTLTAKVFKDHLERLGLRDMYIR 287
            IVQRGDVIVTKIAS++NIADPFTKTLTAKVF+ HLE LGLRDMYIR
Sbjct: 1064 IVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 1109

[Close]

BLAST of Cmc04g0094161 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 510.8 bits (1314), Expect = 7.8e-141
Identity = 252/286 (88.11%), Postives = 267/286 (93.36%), Query Frame = 0


Query: 1   MIRDRKNKTLALSQATYIEKMLVQYSMQNSKKGLLPFRHEVHMSKEQCPKTPQEVEDMRR 60
           +IRDRKNKTLALSQATYI+K+LV+YSMQNSKKGLLPFRH VH+SKEQ PKTPQEVEDMRR
Sbjct: 15  IIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRR 74

Query: 61  IPYASTVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTAVKIILKYLKRTRDYMLMY 120
           IPYAS VGSLMY MLCTRPDICY VGIVSRYQSNPGLDHWTAVKIILKYL+RTRDYML+Y
Sbjct: 75  IPYASAVGSLMYVMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVY 134

Query: 121 RAKDLILTGYTDSDFQTNKDSRKSMSRSMFTLNGGTVVWCSIKKGCIIDSTMEAEYVAAC 180
            AKDLILTGYTDSDFQT+KDSRKS S S+FTLNGG VVW SIK+GCI DSTMEAEYVAAC
Sbjct: 135 GAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAC 194

Query: 181 GAAKEAVWLRKFRHDLEVIANMNLPITLYCDNIGAVANSKEPCSQKRGKHVERKYHLIRE 240
            AAKEAVWLRKF HDLEV+ NMNLPITLYCDN GAVANSKEP S KRGKH+ERKYHLIRE
Sbjct: 195 EAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE 254

Query: 241 IVQRGDVIVTKIASKNNIADPFTKTLTAKVFKDHLERLGLRDMYIR 287
           IVQRGDVIVTKIAS++NIADPFTKTLTAKVF+ HLE LGLRDMYIR
Sbjct: 255 IVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 300

[Close]

BLAST of Cmc04g0094161 vs. NCBI nr
Match: KAA0061170.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 505.4 bits (1300), Expect = 3.3e-139
Identity = 250/286 (87.41%), Postives = 265/286 (92.66%), Query Frame = 0


Query: 1   MIRDRKNKTLALSQATYIEKMLVQYSMQNSKKGLLPFRHEVHMSKEQCPKTPQEVEDMRR 60
           +IRDRKNKTLALSQATYI+K+LV+YSMQNSKKGLLPFRH VH+SKEQ PKTPQEVEDMRR
Sbjct: 111 IIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRR 170

Query: 61  IPYASTVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTAVKIILKYLKRTRDYMLMY 120
           IPYAS VGSLMYAMLCTRPDICY VGIVSRYQSNPGLDHWT VKIILKYL+RTRDYML+Y
Sbjct: 171 IPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIILKYLRRTRDYMLVY 230

Query: 121 RAKDLILTGYTDSDFQTNKDSRKSMSRSMFTLNGGTVVWCSIKKGCIIDSTMEAEYVAAC 180
            AKDLILTGYTDSDFQT+KDSRKS S S+FTLN G VVW SIK+GCI DSTMEAEYVAAC
Sbjct: 231 GAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNEGAVVWRSIKQGCIADSTMEAEYVAAC 290

Query: 181 GAAKEAVWLRKFRHDLEVIANMNLPITLYCDNIGAVANSKEPCSQKRGKHVERKYHLIRE 240
            AAKEAVWLRKF HDLEV+ NMNLPITLYCDN GAVANSKEP S KRGKH+ERKYHLIRE
Sbjct: 291 EAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE 350

Query: 241 IVQRGDVIVTKIASKNNIADPFTKTLTAKVFKDHLERLGLRDMYIR 287
           IVQRGDVIVTKIAS++NIADPFTK LTAKVF+ HLE LGLRDMYIR
Sbjct: 351 IVQRGDVIVTKIASEHNIADPFTKILTAKVFEGHLESLGLRDMYIR 396

[Close]

BLAST of Cmc04g0094161 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.5e-57
Identity = 116/280 (41.43%), Postives = 173/280 (61.79%), Query Frame = 0


Query: 1    MIRDRKNKTLALSQATYIEKMLVQYSMQNSKKGLLPFRHEVHMSKEQCPKTPQEVEDMRR 60
            ++R+R ++ L LSQ  YIE++L +++M+N+K    P    + +SK+ CP T +E  +M +
Sbjct: 1049 IVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAK 1108

Query: 61   IPYASTVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTAVKIILKYLKRTRDYMLMY 120
            +PY+S VGSLMYAM+CTRPDI + VG+VSR+  NPG +HW AVK IL+YL+ T    L +
Sbjct: 1109 VPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF 1168

Query: 121  RAKDLILTGYTDSDFQTNKDSRKSMSRSMFTLNGGTVVWCSIKKGCIIDSTMEAEYVAAC 180
               D IL GYTD+D   + D+RKS +  +FT +GG + W S  + C+  ST EAEY+AA 
Sbjct: 1169 GGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAAT 1228

Query: 181  GAAKEAVWLRKFRHDLEVIANMNLPITLYCDNIGAVANSKEPCSQKRGKHVERKYHLIRE 240
               KE +WL++F   L+ +        +YCD+  A+  SK      R KH++ +YH IRE
Sbjct: 1229 ETGKEMIWLKRF---LQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIRE 1288

Query: 241  IVQRGDVIVTKIASKNNIADPFTKTLTAKVFKDHLERLGL 281
            +V    + V KI++  N AD  TK +    F+   E +G+
Sbjct: 1289 MVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of Cmc04g0094161 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 156.0 bits (393), Expect = 6.4e-37
Identity = 94/277 (33.94%), Postives = 150/277 (54.15%), Query Frame = 0


Query: 12   LSQATYIEKMLVQYSMQNSKKGLLP----FRHEVHMSKEQCPKTPQEVEDMRRIPYASTV 71
            LSQ+ Y++K+L +++M+N      P      +E+  S E C             P  S +
Sbjct: 1137 LSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDC-----------NTPCRSLI 1196

Query: 72   GSLMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTAVKIILKYLKRTRDYMLMYR---AKD 131
            G LMY MLCTRPD+   V I+SRY S    + W  +K +L+YLK T D  L+++   A +
Sbjct: 1197 GCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFE 1256

Query: 132  LILTGYTDSDFQTNKDSRKSMSRSMFTL-NGGTVVWCSIKKGCIIDSTMEAEYVAACGAA 191
              + GY DSD+  ++  RKS +  +F + +   + W + ++  +  S+ EAEY+A   A 
Sbjct: 1257 NKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAV 1316

Query: 192  KEAVWLRKFRHDLEVIANMNLPITLYCDNIGAVANSKEPCSQKRGKHVERKYHLIREIVQ 251
            +EA+WL+     + +   +  PI +Y DN G ++ +  P   KR KH++ KYH  RE VQ
Sbjct: 1317 REALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQ 1376

Query: 252  RGDVIVTKIASKNNIADPFTKTLTAKVFKDHLERLGL 281
               + +  I ++N +AD FTK L A  F +  ++LGL
Sbjct: 1377 NNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc04g0094161 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.3e-29
Identity = 82/272 (30.15%), Postives = 132/272 (48.53%), Query Frame = 0


Query: 10   LALSQATYIEKMLVQYSMQNSKKGLLPFRHEVHMSKEQCPKTPQEVEDMRRIPYASTVGS 69
            L LSQ  Y   +L + +M  +K    P      ++     K P   E      Y   VGS
Sbjct: 1181 LHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTE------YRGIVGS 1240

Query: 70   LMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTAVKIILKYLKRTRDY-MLMYRAKDLILT 129
            L Y +  TRPD+ Y V  +S+Y   P  DHW A+K +L+YL  T D+ + + +   L L 
Sbjct: 1241 LQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLH 1300

Query: 130  GYTDSDFQTNKDSRKSMSRSMFTLNGGTVVWCSIKKGCIIDSTMEAEYVAACGAAKEAVW 189
             Y+D+D+  + D   S +  +  L    + W S K+  ++ S+ EAEY +    + E  W
Sbjct: 1301 AYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQW 1360

Query: 190  LRKFRHDLEVIANMNLPITLYCDNIGAVANSKEPCSQKRGKHVERKYHLIREIVQRGDVI 249
            +     +L +   ++ P  +YCDN+GA      P    R KH+   YH IR  VQ G + 
Sbjct: 1361 ICSLLTELGI--QLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALR 1420

Query: 250  VTKIASKNNIADPFTKTLTAKVFKDHLERLGL 281
            V  +++ + +AD  TK L+   F++   ++G+
Sbjct: 1421 VVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443

[Close]

BLAST of Cmc04g0094161 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.1e-27
Identity = 82/272 (30.15%), Postives = 131/272 (48.16%), Query Frame = 0


Query: 10   LALSQATYIEKMLVQYSMQNSKKGLLPFRHEVHMSKEQCPKTPQEVEDMRRIPYASTVGS 69
            L LSQ  YI  +L + +M  +K    P      +S     K     E      Y   VGS
Sbjct: 1198 LHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTE------YRGIVGS 1257

Query: 70   LMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTAVKIILKYLKRTRDY-MLMYRAKDLILT 129
            L Y +  TRPDI Y V  +S++   P  +H  A+K IL+YL  T ++ + + +   L L 
Sbjct: 1258 LQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLH 1317

Query: 130  GYTDSDFQTNKDSRKSMSRSMFTLNGGTVVWCSIKKGCIIDSTMEAEYVAACGAAKEAVW 189
             Y+D+D+  +KD   S +  +  L    + W S K+  ++ S+ EAEY +    + E  W
Sbjct: 1318 AYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQW 1377

Query: 190  LRKFRHDLEVIANMNLPITLYCDNIGAVANSKEPCSQKRGKHVERKYHLIREIVQRGDVI 249
            +     +L +   +  P  +YCDN+GA      P    R KH+   YH IR  VQ G + 
Sbjct: 1378 ICSLLTELGI--RLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALR 1437

Query: 250  VTKIASKNNIADPFTKTLTAKVFKDHLERLGL 281
            V  +++ + +AD  TK L+   F++   ++G+
Sbjct: 1438 VVHVSTHDQLADTLTKPLSRTAFQNFASKIGV 1460

[Close]

BLAST of Cmc04g0094161 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.6e-25
Identity = 59/133 (44.36%), Postives = 88/133 (66.17%), Query Frame = 0


Query: 58  MRRIPYASTVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTAVKIILKYLKRTRDYM 117
           M+ +PY S VG++MY M+ TRPD+   VG++S++ S+P   HW A+K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 118 LMY-RAKDLILTGYTDSDFQTNKDSRKSMSRSMFTLNGGTVVWCSIKKGCIIDSTMEAEY 177
           L + RA    L GY+D+D+  + +SR+S S  +F LNGG V W S K+  +  S+ E EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 178 VAACGAAKEAVWL 190
           +A   A +EAVWL
Sbjct: 121 MALSEATQEAVWL 133

[Close]

BLAST of Cmc04g0094161 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 1.7e-141
Identity = 252/286 (88.11%), Postives = 268/286 (93.71%), Query Frame = 0


Query: 1    MIRDRKNKTLALSQATYIEKMLVQYSMQNSKKGLLPFRHEVHMSKEQCPKTPQEVEDMRR 60
            +IRDRKNKTLALSQATYI+K+LV+YSMQNSKKGLLPFRH VH+SKEQ PKTPQEVEDMRR
Sbjct: 950  IIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRR 1009

Query: 61   IPYASTVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTAVKIILKYLKRTRDYMLMY 120
            IPYAS VGSLMYAMLCTRPDICY VGIVSRYQSNPGLDHWTAVKI+LKYL+RTRDYML+Y
Sbjct: 1010 IPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYMLVY 1069

Query: 121  RAKDLILTGYTDSDFQTNKDSRKSMSRSMFTLNGGTVVWCSIKKGCIIDSTMEAEYVAAC 180
             AKDLILTGYTDSDFQT+KDSRKS S S+FTLNGG VVW SIK+GCI DSTMEAEYVAAC
Sbjct: 1070 GAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAC 1129

Query: 181  GAAKEAVWLRKFRHDLEVIANMNLPITLYCDNIGAVANSKEPCSQKRGKHVERKYHLIRE 240
             AAKEAVWLRKF HDLEV+ NMNLPITLYCDN GAVANSKEP S KRGKH+ERKYHLIRE
Sbjct: 1130 EAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE 1189

Query: 241  IVQRGDVIVTKIASKNNIADPFTKTLTAKVFKDHLERLGLRDMYIR 287
            IVQRGDVIVTKIAS++NIADPFTKTLTAKVF+ HLE LGLRDMYIR
Sbjct: 1190 IVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 1235

[Close]

BLAST of Cmc04g0094161 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 1.7e-141
Identity = 252/286 (88.11%), Postives = 268/286 (93.71%), Query Frame = 0


Query: 1    MIRDRKNKTLALSQATYIEKMLVQYSMQNSKKGLLPFRHEVHMSKEQCPKTPQEVEDMRR 60
            +IRDRKNKTLALSQATYI+K+LV+YSMQNSKKGLLPFRH VH+SKEQ PKTPQEVEDMRR
Sbjct: 824  IIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRR 883

Query: 61   IPYASTVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTAVKIILKYLKRTRDYMLMY 120
            IPYAS VGSLMYAMLCTRPDICY VGIVSRYQSNPGLDHWTAVKI+LKYL+RTRDYML+Y
Sbjct: 884  IPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYMLVY 943

Query: 121  RAKDLILTGYTDSDFQTNKDSRKSMSRSMFTLNGGTVVWCSIKKGCIIDSTMEAEYVAAC 180
             AKDLILTGYTDSDFQT+KDSRKS S S+FTLNGG VVW SIK+GCI DSTMEAEYVAAC
Sbjct: 944  GAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAC 1003

Query: 181  GAAKEAVWLRKFRHDLEVIANMNLPITLYCDNIGAVANSKEPCSQKRGKHVERKYHLIRE 240
             AAKEAVWLRKF HDLEV+ NMNLPITLYCDN GAVANSKEP S KRGKH+ERKYHLIRE
Sbjct: 1004 EAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE 1063

Query: 241  IVQRGDVIVTKIASKNNIADPFTKTLTAKVFKDHLERLGLRDMYIR 287
            IVQRGDVIVTKIAS++NIADPFTKTLTAKVF+ HLE LGLRDMYIR
Sbjct: 1064 IVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 1109

[Close]

BLAST of Cmc04g0094161 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 1.7e-141
Identity = 252/286 (88.11%), Postives = 269/286 (94.06%), Query Frame = 0


Query: 1    MIRDRKNKTLALSQATYIEKMLVQYSMQNSKKGLLPFRHEVHMSKEQCPKTPQEVEDMRR 60
            +IRDRKNKTLALSQATYI+K+LV+YSMQNSKKGLLPFRH VH+SKEQ PKTPQEVEDMRR
Sbjct: 950  IIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRR 1009

Query: 61   IPYASTVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTAVKIILKYLKRTRDYMLMY 120
            IPYAS VGSLMYAMLCTRPDICY VGIVSRYQSNPGLDHWTAVKIILKYL+RTRDYML+Y
Sbjct: 1010 IPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVY 1069

Query: 121  RAKDLILTGYTDSDFQTNKDSRKSMSRSMFTLNGGTVVWCSIKKGCIIDSTMEAEYVAAC 180
             AKDLILTGYT+SDFQT+KDSRKS SRS+FTLNGG VVW SIK+GCI DSTMEAEYVAAC
Sbjct: 1070 GAKDLILTGYTNSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAC 1129

Query: 181  GAAKEAVWLRKFRHDLEVIANMNLPITLYCDNIGAVANSKEPCSQKRGKHVERKYHLIRE 240
             AAKEAVWL+KF HDLEV+ NMNLPITLYCDN GAVANSKEP S KRGKH+ERKYHLIRE
Sbjct: 1130 EAAKEAVWLKKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE 1189

Query: 241  IVQRGDVIVTKIASKNNIADPFTKTLTAKVFKDHLERLGLRDMYIR 287
            IVQRGDVIVTKIAS++NIADPFTKTLTAKVF+ HLE LGLRDMYIR
Sbjct: 1190 IVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 1235

[Close]

BLAST of Cmc04g0094161 vs. ExPASy TrEMBL
Match: A0A5A7TKM4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00470 PE=4 SV=1)

HSP 1 Score: 510.8 bits (1314), Expect = 3.8e-141
Identity = 252/286 (88.11%), Postives = 267/286 (93.36%), Query Frame = 0


Query: 1   MIRDRKNKTLALSQATYIEKMLVQYSMQNSKKGLLPFRHEVHMSKEQCPKTPQEVEDMRR 60
           +IRDRKNKTLALSQATYI+K+LV+YSMQNSKKGLLPFRH VH+SKEQ PKTPQEVEDMRR
Sbjct: 15  IIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRR 74

Query: 61  IPYASTVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTAVKIILKYLKRTRDYMLMY 120
           IPYAS VGSLMY MLCTRPDICY VGIVSRYQSNPGLDHWTAVKIILKYL+RTRDYML+Y
Sbjct: 75  IPYASAVGSLMYVMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVY 134

Query: 121 RAKDLILTGYTDSDFQTNKDSRKSMSRSMFTLNGGTVVWCSIKKGCIIDSTMEAEYVAAC 180
            AKDLILTGYTDSDFQT+KDSRKS S S+FTLNGG VVW SIK+GCI DSTMEAEYVAAC
Sbjct: 135 GAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAC 194

Query: 181 GAAKEAVWLRKFRHDLEVIANMNLPITLYCDNIGAVANSKEPCSQKRGKHVERKYHLIRE 240
            AAKEAVWLRKF HDLEV+ NMNLPITLYCDN GAVANSKEP S KRGKH+ERKYHLIRE
Sbjct: 195 EAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE 254

Query: 241 IVQRGDVIVTKIASKNNIADPFTKTLTAKVFKDHLERLGLRDMYIR 287
           IVQRGDVIVTKIAS++NIADPFTKTLTAKVF+ HLE LGLRDMYIR
Sbjct: 255 IVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 300

[Close]

BLAST of Cmc04g0094161 vs. ExPASy TrEMBL
Match: A0A5A7V1F5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00440 PE=4 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 1.6e-139
Identity = 250/286 (87.41%), Postives = 265/286 (92.66%), Query Frame = 0


Query: 1   MIRDRKNKTLALSQATYIEKMLVQYSMQNSKKGLLPFRHEVHMSKEQCPKTPQEVEDMRR 60
           +IRDRKNKTLALSQATYI+K+LV+YSMQNSKKGLLPFRH VH+SKEQ PKTPQEVEDMRR
Sbjct: 111 IIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRR 170

Query: 61  IPYASTVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTAVKIILKYLKRTRDYMLMY 120
           IPYAS VGSLMYAMLCTRPDICY VGIVSRYQSNPGLDHWT VKIILKYL+RTRDYML+Y
Sbjct: 171 IPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIILKYLRRTRDYMLVY 230

Query: 121 RAKDLILTGYTDSDFQTNKDSRKSMSRSMFTLNGGTVVWCSIKKGCIIDSTMEAEYVAAC 180
            AKDLILTGYTDSDFQT+KDSRKS S S+FTLN G VVW SIK+GCI DSTMEAEYVAAC
Sbjct: 231 GAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNEGAVVWRSIKQGCIADSTMEAEYVAAC 290

Query: 181 GAAKEAVWLRKFRHDLEVIANMNLPITLYCDNIGAVANSKEPCSQKRGKHVERKYHLIRE 240
            AAKEAVWLRKF HDLEV+ NMNLPITLYCDN GAVANSKEP S KRGKH+ERKYHLIRE
Sbjct: 291 EAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE 350

Query: 241 IVQRGDVIVTKIASKNNIADPFTKTLTAKVFKDHLERLGLRDMYIR 287
           IVQRGDVIVTKIAS++NIADPFTK LTAKVF+ HLE LGLRDMYIR
Sbjct: 351 IVQRGDVIVTKIASEHNIADPFTKILTAKVFEGHLESLGLRDMYIR 396

[Close]

BLAST of Cmc04g0094161 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-20
Identity = 60/179 (33.52%), Postives = 95/179 (53.07%), Query Frame = 0


Query: 63  YASTVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTAVKIILKYLKRTRDYMLMYRA 122
           Y   +G LMY  + TR DI + V  +S++   P L H  AV  IL Y+K T    L Y +
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 123 K-DLILTGYTDSDFQTNKDSRKSMSRSMFTLNGGTVVWCSIKKGCIIDSTMEAEYVAACG 182
           + ++ L  ++D+ FQ+ KD+R+S +     L    + W S K+  +  S+ EAEY A   
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 497

Query: 183 AAKEAVWLRKFRHDLEVIANMNLPITLYCDNIGAVANSKEPCSQKRGKHVERKYHLIRE 241
           A  E +WL +F  +L++   ++ P  L+CDN  A+  +      +R KH+E   H +RE
Sbjct: 498 ATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]

BLAST of Cmc04g0094161 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-09
Identity = 51/180 (28.33%), Postives = 83/180 (46.11%), Query Frame = 0


Query: 10  LALSQATYIEKMLVQYSMQNSKKGLLPFRHEVHMSKEQCPKTPQEVEDMRRIPYASTVGS 69
           L LSQ  Y E++L    M + K    P   +++ S     K P   +      + S VG+
Sbjct: 54  LFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSD------FRSIVGA 113

Query: 70  LMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTAVKIILKYLKRTRDY-MLMYRAKDLILT 129
           L Y  L TRPDI Y V IV +    P L  +  +K +L+Y+K T  + + +++   L + 
Sbjct: 114 LQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQ 173

Query: 130 GYTDSDFQTNKDSRKSMSRSMFTLNGGTVVWCSIKKGCIIDSTMEAEYVAACGAAKEAVW 189
            + DSD+     +R+S +     L    + W + ++  +  S+ E EY A    A E  W
Sbjct: 174 AFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

The following BLAST results are available for this feature:

BLAST of Cmc04g0094161 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025945.1	3.5e-141	88.11	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0035907.1	3.5e-141	88.11	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0059226.1	3.5e-141	88.11	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0042496.1	7.8e-141	88.11	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061170.1	3.3e-139	87.41	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0094161 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.5e-57	41.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	6.4e-37	33.94	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.3e-29	30.15	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.1e-27	30.15	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P0CV72	5.6e-25	44.36	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc04g0094161 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	1.7e-141	88.11	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	1.7e-141	88.11	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5A7T2V9	1.7e-141	88.11	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5A7TKM4	3.8e-141	88.11	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G0047...	[more]
A0A5A7V1F5	1.6e-139	87.41	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G0044...	[more]

BLAST of Cmc04g0094161 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.5e-20	33.52	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.6e-09	28.33	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 146..272
None	No IPR available	PANTHER	PTHR11439:SF343	SUBFAMILY NOT NAMED	coord: 146..272
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 128..269 e-value: 1.51586E-55 score: 174.194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0094161.1	Cmc04g0094161.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding