Cmc04g0093581 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0093581
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	AP complex subunit sigma
Location	CMiso1.1chr04: 5928338 .. 5928773 (-)
RNA-Seq Expression	Cmc04g0093581
Synteny	Cmc04g0093581

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATGGTCGGTGATAGTGATGAATACTGAAAGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGGTTCCTTTTTGGGATTTGTGTTGATTTTTTTGTACTGTTTGGGTCATTTCTATCGAATGATCTGTCTGATGATGAATTCGTGAATCCAGCCCATAGAGAAGCAACAGGAGCTCATTCGCAGCGTCTATGGAGGTTGGCAATTCTATATTTAATATTTCAAATTAGAATTTTATAAATTATTAAAATGGTCAGTGGTATTTCCACTATTGTAACTATGGTTTCTTTAACTTGTATTTCTATTTTGATATCTTTTGTTTCCTATTTTGGTACAGTACTTTGCAGTCGAGGTGAGAACATCAGCAATTTCGTGGAGGCTGAGTCCATCTTCGGTTCGGTAATATTTCCTTGTCCAATAATTTCCTTATAG

mRNA sequence

ATGATATGGTCGGTGATAGTGATGAATACTGAAAGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGCCCATAGAGAAGCAACAGGAGCTCATTCGCAGCGTCTATGGAGTACTTTGCAGTCGAGGTGAGAACATCAGCAATTTCGTGGAGGCTGAGTCCATCTTCGGTTCGGTAATATTTCCTTGTCCAATAATTTCCTTATAG

Coding sequence (CDS)

ATGATATGGTCGGTGATAGTGATGAATACTGAAAGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGCCCATAGAGAAGCAACAGGAGCTCATTCGCAGCGTCTATGGAGTACTTTGCAGTCGAGGTGAGAACATCAGCAATTTCGTGGAGGCTGAGTCCATCTTCGGTTCGGTAATATTTCCTTGTCCAATAATTTCCTTATAG

Protein sequence

MIWSVIVMNTESKPRFAKFYDFQPIEKQQELIRSVYGVLCSRGENISNFVEAESIFGSVIFPCPIISL

Homology

[Close]

BLAST of Cmc04g0093581 vs. NCBI nr
Match: XP_008452384.1 (PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452386.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452387.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452388.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452389.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452390.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452391.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_016901330.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 3.3e-21
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MIWSVIVMNTESKPRFAKFYDFQPIEKQQELIRSVYGVLCSRGENISNFVEAESIFGS 59
          MI SVIVMNTE KPRFAKFYDFQPIEKQQELIRSVYGVLCSR ENISNFVEAESIFGS
Sbjct: 1  MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGS 58

[Close]

BLAST of Cmc04g0093581 vs. NCBI nr
Match: KAA0058373.1 (AP-3 complex subunit sigma [Cucumis melo var. makuwa] >TYK23419.1 AP-3 complex subunit sigma [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 3.3e-21
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MIWSVIVMNTESKPRFAKFYDFQPIEKQQELIRSVYGVLCSRGENISNFVEAESIFGS 59
          MI SVIVMNTE KPRFAKFYDFQPIEKQQELIRSVYGVLCSR ENISNFVEAESIFGS
Sbjct: 1  MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGS 58

[Close]

BLAST of Cmc04g0093581 vs. NCBI nr
Match: KAA0050601.1 (AP-3 complex subunit sigma [Cucumis melo var. makuwa] >TYK07840.1 AP-3 complex subunit sigma [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 2.1e-20
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MIWSVIVMNTESKPRFAKFYDFQPIEKQQELIRSVYGVLCSRGENISNFVEAESIFGS 59
          MI SVIVMN+E KPRFAKFYDFQPIEKQQELIRSVYGVLCS+ ENISNFVEAESIFGS
Sbjct: 1  MILSVIVMNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGS 58

[Close]

BLAST of Cmc04g0093581 vs. NCBI nr
Match: XP_011655957.1 (AP-3 complex subunit sigma [Cucumis sativus] >XP_031741534.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741535.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741536.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741537.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741538.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741539.1 AP-3 complex subunit sigma [Cucumis sativus] >KAE8648882.1 hypothetical protein Csa_008325 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-20
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1  MIWSVIVMNTESKPRFAKFYDFQPIEKQQELIRSVYGVLCSRGENISNFVEAESIFG 58
          MI SVIVMNTE KPRFAKFYDFQPIEKQQELIRSVYGVLCSR EN+SNFVE ESIFG
Sbjct: 1  MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFG 57

[Close]

BLAST of Cmc04g0093581 vs. NCBI nr
Match: XP_038893159.1 (AP-3 complex subunit sigma [Benincasa hispida] >XP_038893161.1 AP-3 complex subunit sigma [Benincasa hispida] >XP_038893162.1 AP-3 complex subunit sigma [Benincasa hispida] >XP_038893163.1 AP-3 complex subunit sigma [Benincasa hispida])

HSP 1 Score: 104.8 bits (260), Expect = 3.1e-19
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1  MIWSVIVMNTESKPRFAKFYDFQPIEKQQELIRSVYGVLCSRGENISNFVEAESIFG 58
          MI +VIVMNT+ KPRFAKFY+FQP+EKQQELIRSVYGVLCSR EN+SNFVEAESIFG
Sbjct: 1  MIRAVIVMNTQGKPRFAKFYNFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFG 57

[Close]

BLAST of Cmc04g0093581 vs. ExPASy Swiss-Prot
Match: Q8VZ37 (AP-3 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At3g50860 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.9e-17
Identity = 39/57 (68.42%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1  MIWSVIVMNTESKPRFAKFYDFQPIEKQQELIRSVYGVLCSRGENISNFVEAESIFG 58
          MI +V++MNT+ KPR AKFYD+ P+EKQQELIR V+ VLCSR EN+SNF+E ES+FG
Sbjct: 1  MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFG 57

[Close]

BLAST of Cmc04g0093581 vs. ExPASy Swiss-Prot
Match: Q1JQA3 (AP-3 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-06
Identity = 22/57 (38.60%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 1  MIWSVIVMNTESKPRFAKFYDFQPIEKQQELIRSVYGVLCSRGENISNFVEAESIFG 58
          MI +++V N   KPR  +FY   P E QQ+++R  + ++  R +NI NF+E  S+ G
Sbjct: 1  MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIG 57

[Close]

BLAST of Cmc04g0093581 vs. ExPASy Swiss-Prot
Match: P59780 (AP-3 complex subunit sigma-2 OS=Homo sapiens OX=9606 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-06
Identity = 22/57 (38.60%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 1  MIWSVIVMNTESKPRFAKFYDFQPIEKQQELIRSVYGVLCSRGENISNFVEAESIFG 58
          MI +++V N   KPR  +FY   P E QQ+++R  + ++  R +NI NF+E  S+ G
Sbjct: 1  MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIG 57

[Close]

BLAST of Cmc04g0093581 vs. ExPASy Swiss-Prot
Match: Q8BSZ2 (AP-3 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap3s2 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-06
Identity = 22/57 (38.60%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 1  MIWSVIVMNTESKPRFAKFYDFQPIEKQQELIRSVYGVLCSRGENISNFVEAESIFG 58
          MI +++V N   KPR  +FY   P E QQ+++R  + ++  R +NI NF+E  S+ G
Sbjct: 1  MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIG 57

[Close]

BLAST of Cmc04g0093581 vs. ExPASy Swiss-Prot
Match: Q5RDP9 (AP-3 complex subunit sigma-2 OS=Pongo abelii OX=9601 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-06
Identity = 22/57 (38.60%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 1  MIWSVIVMNTESKPRFAKFYDFQPIEKQQELIRSVYGVLCSRGENISNFVEAESIFG 58
          MI +++V N   KPR  +FY   P E QQ+++R  + ++  R +NI NF+E  S+ G
Sbjct: 1  MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIG 57

[Close]

BLAST of Cmc04g0093581 vs. ExPASy TrEMBL
Match: A0A1S3BT37 (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103493438 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.6e-21
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MIWSVIVMNTESKPRFAKFYDFQPIEKQQELIRSVYGVLCSRGENISNFVEAESIFGS 59
          MI SVIVMNTE KPRFAKFYDFQPIEKQQELIRSVYGVLCSR ENISNFVEAESIFGS
Sbjct: 1  MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGS 58

[Close]

BLAST of Cmc04g0093581 vs. ExPASy TrEMBL
Match: A0A5A7UR76 (AP-3 complex subunit sigma OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1359G00170 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.6e-21
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MIWSVIVMNTESKPRFAKFYDFQPIEKQQELIRSVYGVLCSRGENISNFVEAESIFGS 59
          MI SVIVMNTE KPRFAKFYDFQPIEKQQELIRSVYGVLCSR ENISNFVEAESIFGS
Sbjct: 1  MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGS 58

[Close]

BLAST of Cmc04g0093581 vs. ExPASy TrEMBL
Match: A0A5D3C931 (AP-3 complex subunit sigma OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001390 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-20
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MIWSVIVMNTESKPRFAKFYDFQPIEKQQELIRSVYGVLCSRGENISNFVEAESIFGS 59
          MI SVIVMN+E KPRFAKFYDFQPIEKQQELIRSVYGVLCS+ ENISNFVEAESIFGS
Sbjct: 1  MILSVIVMNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGS 58

[Close]

BLAST of Cmc04g0093581 vs. ExPASy TrEMBL
Match: A0A6J1IUE1 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111478508 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1  MIWSVIVMNTESKPRFAKFYDFQPIEKQQELIRSVYGVLCSRGENISNFVEAESIFG 58
          MI +VIVMNT+ KPRFAKFYDFQP+EKQQELIRSV+GVLCSR EN+SNFVEAESIFG
Sbjct: 1  MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFG 57

[Close]

BLAST of Cmc04g0093581 vs. ExPASy TrEMBL
Match: A0A6J1KSX1 (AP-3 complex subunit sigma-like OS=Cucurbita maxima OX=3661 GN=LOC111497304 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.9e-19
Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1  MIWSVIVMNTESKPRFAKFYDFQPIEKQQELIRSVYGVLCSRGENISNFVEAESIFG 58
          MI +VIVMNT+ KPRFAKFYDFQPIEKQ ELIRSVYGVLCSR EN+SNFVEAESIFG
Sbjct: 1  MIRAVIVMNTQGKPRFAKFYDFQPIEKQLELIRSVYGVLCSRAENVSNFVEAESIFG 57

[Close]

BLAST of Cmc04g0093581 vs. TAIR 10
Match: AT3G50860.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 88.2 bits (217), Expect = 2.8e-18
Identity = 39/57 (68.42%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1  MIWSVIVMNTESKPRFAKFYDFQPIEKQQELIRSVYGVLCSRGENISNFVEAESIFG 58
          MI +V++MNT+ KPR AKFYD+ P+EKQQELIR V+ VLCSR EN+SNF+E ES+FG
Sbjct: 1  MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFG 57

The following BLAST results are available for this feature:

BLAST of Cmc04g0093581 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452384.1	3.3e-21	94.83	PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452386.1 PREDICTED: ...	[more]
KAA0058373.1	3.3e-21	94.83	AP-3 complex subunit sigma [Cucumis melo var. makuwa] >TYK23419.1 AP-3 complex s...	[more]
KAA0050601.1	2.1e-20	91.38	AP-3 complex subunit sigma [Cucumis melo var. makuwa] >TYK07840.1 AP-3 complex s...	[more]
XP_011655957.1	3.6e-20	91.23	AP-3 complex subunit sigma [Cucumis sativus] >XP_031741534.1 AP-3 complex subuni...	[more]
XP_038893159.1	3.1e-19	85.96	AP-3 complex subunit sigma [Benincasa hispida] >XP_038893161.1 AP-3 complex subu...	[more]

BLAST of Cmc04g0093581 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZ37	3.9e-17	68.42	AP-3 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At3g50860 PE=2 SV=...	[more]
Q1JQA3	1.8e-06	38.60	AP-3 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP3S2 PE=2 SV=1	[more]
P59780	1.8e-06	38.60	AP-3 complex subunit sigma-2 OS=Homo sapiens OX=9606 GN=AP3S2 PE=2 SV=1	[more]
Q8BSZ2	1.8e-06	38.60	AP-3 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap3s2 PE=1 SV=1	[more]
Q5RDP9	1.8e-06	38.60	AP-3 complex subunit sigma-2 OS=Pongo abelii OX=9601 GN=AP3S2 PE=2 SV=1	[more]

BLAST of Cmc04g0093581 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BT37	1.6e-21	94.83	AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103493438 PE=3 SV=1	[more]
A0A5A7UR76	1.6e-21	94.83	AP-3 complex subunit sigma OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5D3C931	1.0e-20	91.38	AP-3 complex subunit sigma OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A6J1IUE1	1.5e-19	85.96	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111478508 PE=3 SV=1	[more]
A0A6J1KSX1	1.9e-19	87.72	AP-3 complex subunit sigma-like OS=Cucurbita maxima OX=3661 GN=LOC111497304 PE=3...	[more]

BLAST of Cmc04g0093581 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50860.1	2.8e-18	68.42	Clathrin adaptor complex small chain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 1..54 e-value: 4.4E-8 score: 33.2
None	No IPR available	GENE3D	3.30.450.60		coord: 1..62 e-value: 5.7E-12 score: 47.7
None	No IPR available	PANTHER	PTHR11753:SF42	AP COMPLEX SUBUNIT SIGMA	coord: 1..55
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 1..55
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0093581.1	Cmc04g0093581.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006896	Golgi to vacuole transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0030123	AP-3 adaptor complex
cellular_component	GO:0030659	cytoplasmic vesicle membrane