Cmc03g0064421 (gene) Melon (Charmono) v1.1

Overview
NameCmc03g0064421
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCMiso1.1chr03: 5254797 .. 5255756 (-)
RNA-Seq ExpressionCmc03g0064421
SyntenyCmc03g0064421
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGCCAAAGGGGAGATTGAAAGGTACAAAGCGCATCTAGTTGCAAAAGGTTATAGACAAAAGGTAGAATATGATTATAACAAAGGTTTTGCTCTAGTTGCAATAATGGAAACAATTAGTCTTATCTTATCTCTAGCGGCACATTTCGAATGGGTTGTTTATCAAATGGATGTGAATCCAGCATTTTTAAATGGAGTTATTGTAGAAGAAGTCTATGTGGAGCAATCCCCTGGGTACATGGAACACTCGAATTAGTACTTACTTCAAAAGGAACAAATTTATTCAATGCCCTTATGAGTATGCATTATATGTGAAGAAAGAAGAAGGTAATTTGCTTATTGTGTCCTTTATGTTGATGATCTTATTTACATGGGGAGCAATAAAAACCTTGTTCTGGATTTTAAACATGCTATGACTCGAGAGTTTGAAATGACCGACTTAGGATTGATGAAATACTTTCTTGGTCTTGAAATTAGACAAGGAAATTTTGGAATTTTTGTTTCATGGGAAGCATATGCCAGAAACATTCTAAAGAAAAATAAGATGGAAAATTACAAGCTTGTAGCAACACCAATGGAGCTTGGCACGAAGCTCTCTAGATTTGAGGGAGGAGATCAAGTAAATGCACATGGATATCGAAGTCTAGTTGGGAGTCTGGGATATCTCGCATGCATAAGACCAGATATTGCATATAGTGCTGGTGTAGTGAGTCGATGCTTGGAAGATTCAAGGCACTCGCACCTCGAAGCCATTAAAAGAATTCTTCGATATATTCGAGGGACAGAGTCACTCAGGCTTCTCTACACAAAATCAAGTGAATACAAGTTGATAGGATACCTTGATAGTAATTGGTGTGGCGATATAGATGATAGAAAAAGTATGAGAGGATACGTGTTCTACATGGAGAATACAACATTCACATGGCTTTCGAAAAAACAACCAATCGTAACTTTGTGA

mRNA sequence

ATGAATGCCAAAGGGGAGATTGAAAGGTACAAAGCGCATCTAGTTGCAAAAGGTTATAGACAAAAGGTAGAATATGATTATAACAAAGGTTTTGCTCTAGTTGCAATAATGGAAACAATTAGTCTTATCTTATCTCTAGCGGCACATTTCGAATGGGTTGTTTATCAAATGGATGTGAATCCAGCATTTTTAAATGGAGTTATTGTAGAAGAAGTCTATGTGGAGCAATCCCCTGGGTACATGGAACACTCGAATTACAATAAAAACCTTGTTCTGGATTTTAAACATGCTATGACTCGAGAGTTTGAAATGACCGACTTAGGATTGATGAAATACTTTCTTGGTCTTGAAATTAGACAAGGAAATTTTGGAATTTTTGTTTCATGGGAAGCATATGCCAGAAACATTCTAAAGAAAAATAAGATGGAAAATTACAAGCTTGTAGCAACACCAATGGAGCTTGGCACGAAGCTCTCTAGATTTGAGGGAGGAGATCAAGTAAATGCACATGGATATCGAAGTCTAGTTGGGAGTCTGGGATATCTCGCATGCATAAGACCAGATATTGCATATAGTGCTGGTGTAGTGAGTCGATGCTTGGAAGATTCAAGGCACTCGCACCTCGAAGCCATTAAAAGAATTCTTCGATATATTCGAGGGACAGAGTCACTCAGGCTTCTCTACACAAAATCAAGTGAATACAAGTTGATAGGATACCTTGATAGTAATTGGTGTGGCGATATAGATGATAGAAAAAGTATGAGAGGATACGTGTTCTACATGGAGAATACAACATTCACATGGCTTTCGAAAAAACAACCAATCGTAACTTTGTGA

Coding sequence (CDS)

ATGAATGCCAAAGGGGAGATTGAAAGGTACAAAGCGCATCTAGTTGCAAAAGGTTATAGACAAAAGGTAGAATATGATTATAACAAAGGTTTTGCTCTAGTTGCAATAATGGAAACAATTAGTCTTATCTTATCTCTAGCGGCACATTTCGAATGGGTTGTTTATCAAATGGATGTGAATCCAGCATTTTTAAATGGAGTTATTGTAGAAGAAGTCTATGTGGAGCAATCCCCTGGGTACATGGAACACTCGAATTACAATAAAAACCTTGTTCTGGATTTTAAACATGCTATGACTCGAGAGTTTGAAATGACCGACTTAGGATTGATGAAATACTTTCTTGGTCTTGAAATTAGACAAGGAAATTTTGGAATTTTTGTTTCATGGGAAGCATATGCCAGAAACATTCTAAAGAAAAATAAGATGGAAAATTACAAGCTTGTAGCAACACCAATGGAGCTTGGCACGAAGCTCTCTAGATTTGAGGGAGGAGATCAAGTAAATGCACATGGATATCGAAGTCTAGTTGGGAGTCTGGGATATCTCGCATGCATAAGACCAGATATTGCATATAGTGCTGGTGTAGTGAGTCGATGCTTGGAAGATTCAAGGCACTCGCACCTCGAAGCCATTAAAAGAATTCTTCGATATATTCGAGGGACAGAGTCACTCAGGCTTCTCTACACAAAATCAAGTGAATACAAGTTGATAGGATACCTTGATAGTAATTGGTGTGGCGATATAGATGATAGAAAAAGTATGAGAGGATACGTGTTCTACATGGAGAATACAACATTCACATGGCTTTCGAAAAAACAACCAATCGTAACTTTGTGA

Protein sequence

MNAKGEIERYKAHLVAKGYRQKVEYDYNKGFALVAIMETISLILSLAAHFEWVVYQMDVNPAFLNGVIVEEVYVEQSPGYMEHSNYNKNLVLDFKHAMTREFEMTDLGLMKYFLGLEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEGGDQVNAHGYRSLVGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTESLRLLYTKSSEYKLIGYLDSNWCGDIDDRKSMRGYVFYMENTTFTWLSKKQPIVTL
Homology
BLAST of Cmc03g0064421 vs. NCBI nr
Match: KAA0058967.1 (Tpv2-1c [Cucumis melo var. makuwa] >TYK10999.1 Tpv2-1c [Cucumis melo var. makuwa])

HSP 1 Score: 360.9 bits (925), Expect = 9.7e-96
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0

Query: 104 MTDLGLMKYFLGLEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEG 163
           MTDLGLMKYFLGLEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEG
Sbjct: 1   MTDLGLMKYFLGLEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEG 60

Query: 164 GDQVNAHGYRSLVGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTES 223
           GDQVNAHGYRSLVGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTES
Sbjct: 61  GDQVNAHGYRSLVGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTES 120

Query: 224 LRLLYTKSSEYKLIGYLDSNWCGDIDDRKSMRGYVFYMENTTFTWLSKKQPIVTL 279
           LRLLYTKSSEYKLIGYLDSNWCGDIDDRKSMRGYVFYMENTTFTWLSKKQPIVTL
Sbjct: 121 LRLLYTKSSEYKLIGYLDSNWCGDIDDRKSMRGYVFYMENTTFTWLSKKQPIVTL 175

BLAST of Cmc03g0064421 vs. NCBI nr
Match: PKU83305.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum])

HSP 1 Score: 352.1 bits (902), Expect = 4.5e-93
Identity = 189/344 (54.94%), Postives = 225/344 (65.41%), Query Frame = 0

Query: 1    MNAKGEIERYKAHLVAKGYRQKVEYDYNKGFALVAIMETISLILSLAAHFEWVVYQMDVN 60
            MNA+GEI+RYKA LVAKGY QK   DY++ FA V  METI L++S AA FEW +YQMDV 
Sbjct: 722  MNAQGEIDRYKARLVAKGYIQKAGIDYDEVFAPVTRMETIRLLISYAAQFEWPIYQMDVK 781

Query: 61   PAFLNGVIVEEVYVEQSPGY---------------------------------------- 120
             AFLNGVI EE+Y+EQ PGY                                        
Sbjct: 782  SAFLNGVIEEEIYLEQPPGYKKIGEEQKVLKLRKALYGLKQAPRAWNTRIDIYFKKNGFT 841

Query: 121  ---MEHSNY-----------------------NKNLVLDFKHAMTREFEMTDLGLMKYFL 180
                EH+ Y                       N  ++ +FK  M +EFEMTDLGLMKYFL
Sbjct: 842  QCPYEHALYVKKKGGNLLFVALYVDDLLFMGNNGKMIENFKCEMEQEFEMTDLGLMKYFL 901

Query: 181  GLEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEGGDQVNAHGYRS 240
            GLE+RQG  GIFVS EAY+++ILKKNKMEN   V TPMELG K SRF+GGD+V+A  YRS
Sbjct: 902  GLEVRQGKSGIFVSQEAYSKDILKKNKMENCNPVTTPMELGAKFSRFDGGDRVDATKYRS 961

Query: 241  LVGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTESLRLLYTKSSEY 279
            LVGSL YL   RPDI+YS GVVSR +E+  ++H +A+KRILRY+RGTESL L Y+K+ EY
Sbjct: 962  LVGSLRYLTSTRPDISYSVGVVSRFMEEPTYTHWKALKRILRYVRGTESLGLFYSKTDEY 1021

BLAST of Cmc03g0064421 vs. NCBI nr
Match: KAE8735514.1 (hypothetical protein F3Y22_tig00000340pilonHSYRG00533 [Hibiscus syriacus])

HSP 1 Score: 347.4 bits (890), Expect = 1.1e-91
Identity = 184/344 (53.49%), Postives = 225/344 (65.41%), Query Frame = 0

Query: 1   MNAKGEIERYKAHLVAKGYRQKVEYDYNKGFALVAIMETISLILSLAAHFEWVVYQMDVN 60
           MNA+GEIERYKA LVAKGYRQK   DY++ FALV  METI L++S  A F+W ++QMDV 
Sbjct: 434 MNAQGEIERYKAMLVAKGYRQKAGIDYDEMFALVTRMETIRLLISQTAQFKWKIFQMDVK 493

Query: 61  PAFLNGVIVEEVYVEQSPGYM--------------------------------------- 120
             FLNGV+ EEVYVEQ P YM                                       
Sbjct: 494 STFLNGVLEEEVYVEQPPRYMKIGEEKKVLKLKKALYGLKQALRTWNTCIDTYFKKNGFT 553

Query: 121 ----EHSNY-----------------------NKNLVLDFKHAMTREFEMTDLGLMKYFL 180
               EH+ Y                       N+ ++ DFK AMTREFEMT+LGLMKYFL
Sbjct: 554 QCPYEHALYVKKEKGNLLFVALYVDDLIFMGNNEEMIKDFKEAMTREFEMTNLGLMKYFL 613

Query: 181 GLEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEGGDQVNAHGYRS 240
           GLE+RQ N GIFVS E YA+ ILK+NKME+   V TPME G KLS+F+GG++V+A  YRS
Sbjct: 614 GLEVRQENIGIFVSQEKYAKEILKRNKMEDCNPVLTPMEPGAKLSKFDGGERVDATKYRS 673

Query: 241 LVGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTESLRLLYTKSSEY 279
           LVGSL YL C R DI+YS  VVSR +E+  ++HL+A+KRILRYI GTESL L YTK+ ++
Sbjct: 674 LVGSLRYLTCTRSDISYSVSVVSRFMEEPVYTHLKAVKRILRYIHGTESLGLFYTKAEDF 733

BLAST of Cmc03g0064421 vs. NCBI nr
Match: KAE8671027.1 (hypothetical protein F3Y22_tig00112000pilonHSYRG00251 [Hibiscus syriacus])

HSP 1 Score: 340.5 bits (872), Expect = 1.4e-89
Identity = 181/344 (52.62%), Postives = 224/344 (65.12%), Query Frame = 0

Query: 1    MNAKGEIERYKAHLVAKGYRQKVEYDYNKGFALVAIMETISLILSLAAHFEWVVYQMDVN 60
            MNA+GEIERYKA LVAKGY+QK   DY++ FA VA METI L++S AA F+W ++QMDV 
Sbjct: 700  MNAQGEIERYKARLVAKGYKQKAGIDYDEVFAPVARMETIRLLISQAAQFKWPIFQMDVK 759

Query: 61   PAFLNGVIVEEVYVEQSPGYM--------------------------------------- 120
             AFLNGV+ E++Y+EQ PGY+                                       
Sbjct: 760  SAFLNGVLEEDIYIEQPPGYVKVEEDKKVLKLKKALYGLKQAPRAWNTRIDTYFMENGFK 819

Query: 121  ----EHSNY-----------------------NKNLVLDFKHAMTREFEMTDLGLMKYFL 180
                EH+ Y                       N  ++ +FK  MTREFEMTDLGLMK+FL
Sbjct: 820  KCPYEHALYAKKNGGNVLFVALYVDDLIFMGNNDEMIEEFKGTMTREFEMTDLGLMKFFL 879

Query: 181  GLEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEGGDQVNAHGYRS 240
            GLE+RQ   GIFVS E YA+ ILKK  MEN   V+TPME G KLS+F+GG++V+A  YRS
Sbjct: 880  GLEVRQVETGIFVSQETYAKEILKKYNMENCNPVSTPMEPGAKLSKFDGGERVDASRYRS 939

Query: 241  LVGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTESLRLLYTKSSEY 279
            LVGSL YL C RPD++ S G+VSR +E+  +SH +A+KRILRYI+GT SL L Y+K+ +Y
Sbjct: 940  LVGSLRYLTCTRPDLSLSVGIVSRFMEEPVYSHWKALKRILRYIQGTVSLGLFYSKAEDY 999

BLAST of Cmc03g0064421 vs. NCBI nr
Match: AGW47867.1 (polyprotein [Phaseolus vulgaris])

HSP 1 Score: 339.7 bits (870), Expect = 2.3e-89
Identity = 181/344 (52.62%), Postives = 223/344 (64.83%), Query Frame = 0

Query: 1    MNAKGEIERYKAHLVAKGYRQKVEYDYNKGFALVAIMETISLILSLAAHFEWVVYQMDVN 60
            MNA+GEIERYKA LVAKGY+QK   DY++ FA V  METI L++S AA F+W ++QMDV 
Sbjct: 888  MNAQGEIERYKARLVAKGYKQKEGIDYDEVFAPVVRMETIRLLISQAAQFKWPIFQMDVK 947

Query: 61   PAFLNGVIVEEVYVEQSPGYM--------------------------------------- 120
             AFLNGV+ EEVY+EQ PGYM                                       
Sbjct: 948  SAFLNGVLEEEVYIEQPPGYMKIGEEKKVLKLKKALYGLKQAPRAWNTRIDTYFKENGFK 1007

Query: 121  ----EHSNYNKN-----------------------LVLDFKHAMTREFEMTDLGLMKYFL 180
                EH+ Y KN                       ++ +FK  M REFEMTDLGLMK+FL
Sbjct: 1008 QCPYEHALYAKNNGGNMIFVALYVDDLIFMGNNNDMIEEFKGTMRREFEMTDLGLMKFFL 1067

Query: 181  GLEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEGGDQVNAHGYRS 240
            GLE+RQ   GIFVS E YA+ ILKK KMEN   V+ PME G KLS+F+GG++V+A  YRS
Sbjct: 1068 GLEVRQKETGIFVSQEKYAKEILKKYKMENCNPVSIPMEPGAKLSKFDGGERVDASRYRS 1127

Query: 241  LVGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTESLRLLYTKSSEY 279
            LVGSL YL C RPD++ S G++SR +E+  +SH +A+KR+LRYI+GT SL L Y+K+ +Y
Sbjct: 1128 LVGSLRYLTCTRPDLSLSVGIISRFMEEPVYSHWKALKRVLRYIQGTVSLGLFYSKAEDY 1187

BLAST of Cmc03g0064421 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.5e-40
Identity = 105/338 (31.07%), Postives = 157/338 (46.45%), Query Frame = 0

Query: 2    NAKGEIERYKAHLVAKGYRQKVEYDYNKGFALVAIMETISLILSLAAHFEWVVYQMDVNP 61
            N+ G + RYKA LVAKGY Q+   DY + F+ V    +I ++L +A    W + Q+DVN 
Sbjct: 1009 NSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNN 1068

Query: 62   AFLNGVIVEEVYVEQSPG---------------------------YMEHSNY-------- 121
            AFL G + ++VY+ Q PG                           Y+E  NY        
Sbjct: 1069 AFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVN 1128

Query: 122  ------------NKNLVLDFKHA-------------------MTREFEMTDLGLMKYFLG 181
                         K++V    +                    +++ F + D   + YFLG
Sbjct: 1129 SVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLG 1188

Query: 182  LEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEGGDQVNAHGYRSL 241
            +E ++   G+ +S   Y  ++L +  M   K V TPM    KLS + G    +   YR +
Sbjct: 1189 IEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGI 1248

Query: 242  VGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTESLRLLYTKSSEYK 274
            VGSL YLA  RPDI+Y+   +S+ +      HL+A+KRILRY+ GT +  +   K +   
Sbjct: 1249 VGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLS 1308

BLAST of Cmc03g0064421 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.5e-38
Identity = 103/338 (30.47%), Postives = 153/338 (45.27%), Query Frame = 0

Query: 2    NAKGEIERYKAHLVAKGYRQKVEYDYNKGFALVAIMETISLILSLAAHFEWVVYQMDVNP 61
            N+ G + RYKA LVAKGY Q+   DY + F+ V    +I ++L +A    W + Q+DVN 
Sbjct: 992  NSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNN 1051

Query: 62   AFLNGVIVEEVYVEQSPG---------------------------YMEHSNY-------- 121
            AFL G + +EVY+ Q PG                           Y+E   Y        
Sbjct: 1052 AFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVN 1111

Query: 122  ----------------------------NKNLVLDFKH---AMTREFEMTDLGLMKYFLG 181
                                          N  +  KH   A+++ F + +   + YFLG
Sbjct: 1112 SISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLG 1171

Query: 182  LEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEGGDQVNAHGYRSL 241
            +E ++   G+ +S   Y  ++L +  M   K VATPM    KL+   G    +   YR +
Sbjct: 1172 IEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGI 1231

Query: 242  VGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTESLRLLYTKSSEYK 274
            VGSL YLA  RPD++Y+   +S+ +      H  A+KR+LRY+ GT    +   K +   
Sbjct: 1232 VGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLS 1291

BLAST of Cmc03g0064421 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 157.5 bits (397), Expect = 2.1e-37
Identity = 105/342 (30.70%), Postives = 158/342 (46.20%), Query Frame = 0

Query: 2    NAKGEIERYKAHLVAKGYRQKVEYDYNKGFALVAIMETISLILSLAAHFEWVVYQMDVNP 61
            N  G   RYKA LVA+G+ QK + DY + FA VA + +   ILSL   +   V+QMDV  
Sbjct: 946  NELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKT 1005

Query: 62   AFLNGVIVEEVYVEQSPG------------------------------------------ 121
            AFLNG + EE+Y+    G                                          
Sbjct: 1006 AFLNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSS 1065

Query: 122  ------YMEHSNYNKNLVL------------------DFKHAMTREFEMTDLGLMKYFLG 181
                   ++  N N+N+ +                  +FK  +  +F MTDL  +K+F+G
Sbjct: 1066 VDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIG 1125

Query: 182  LEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEGGDQVNAHGYRSL 241
            + I      I++S  AY + IL K  MEN   V+TP+            +  N    RSL
Sbjct: 1126 IRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNT-PCRSL 1185

Query: 242  VGSLGY-LACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTESLRLLYTK--SS 274
            +G L Y + C RPD+  +  ++SR    +     + +KR+LRY++GT  ++L++ K  + 
Sbjct: 1186 IGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAF 1245

BLAST of Cmc03g0064421 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.8e-37
Identity = 116/349 (33.24%), Postives = 167/349 (47.85%), Query Frame = 0

Query: 6    EIERYKAHLVAKGYRQKVEYDYNKGFALVAIMETISLILSLAAHFEWVVYQMDVNPAFLN 65
            ++ RYKA LV KG+ QK   D+++ F+ V  M +I  ILSLAA  +  V Q+DV  AFL+
Sbjct: 870  KLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLH 929

Query: 66   GVIVEEVYVEQSPG---------------------------YMEHSNY------------ 125
            G + EE+Y+EQ  G                           YM+  ++            
Sbjct: 930  GDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSD 989

Query: 126  ----------------------------NKNLVLDFKHAMTREFEMTDLGLMKYFLGLEI 185
                                        +K L+   K  +++ F+M DLG  +  LG++I
Sbjct: 990  PCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKI 1049

Query: 186  --RQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEGGDQVNAHG----- 245
               + +  +++S E Y   +L++  M+N K V+TP+    KLS+      V   G     
Sbjct: 1050 VRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKV 1109

Query: 246  -YRSLVGSLGY-LACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTESLRLLYT 279
             Y S VGSL Y + C RPDIA++ GVVSR LE+    H EA+K ILRY+RGT    L + 
Sbjct: 1110 PYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF- 1169

BLAST of Cmc03g0064421 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.8e-23
Identity = 58/180 (32.22%), Postives = 99/180 (55.00%), Query Frame = 0

Query: 98  MTREFEMTDLGLMKYFLGLEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTK 157
           ++  F M DLG + YFLG++I+    G+F+S   YA  IL    M + K ++TP+ L   
Sbjct: 27  LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN 86

Query: 158 LSRFEGGDQVNAHGYRSLVGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRY 217
            S        +   +RS+VG+L YL   RPDI+Y+  +V + + +   +  + +KR+LRY
Sbjct: 87  -SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRY 146

Query: 218 IRGTESLRLLYTKSSEYKLIGYLDSNWCGDIDDRKSMRGYVFYMENTTFTWLSKKQPIVT 277
           ++GT    L   K+S+  +  + DS+W G    R+S  G+  ++     +W +K+QP V+
Sbjct: 147 VKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVS 205

BLAST of Cmc03g0064421 vs. ExPASy TrEMBL
Match: A0A5D3CL83 (Tpv2-1c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00360 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 4.7e-96
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0

Query: 104 MTDLGLMKYFLGLEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEG 163
           MTDLGLMKYFLGLEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEG
Sbjct: 1   MTDLGLMKYFLGLEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEG 60

Query: 164 GDQVNAHGYRSLVGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTES 223
           GDQVNAHGYRSLVGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTES
Sbjct: 61  GDQVNAHGYRSLVGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTES 120

Query: 224 LRLLYTKSSEYKLIGYLDSNWCGDIDDRKSMRGYVFYMENTTFTWLSKKQPIVTL 279
           LRLLYTKSSEYKLIGYLDSNWCGDIDDRKSMRGYVFYMENTTFTWLSKKQPIVTL
Sbjct: 121 LRLLYTKSSEYKLIGYLDSNWCGDIDDRKSMRGYVFYMENTTFTWLSKKQPIVTL 175

BLAST of Cmc03g0064421 vs. ExPASy TrEMBL
Match: A0A2I0X5W4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catenatum OX=906689 GN=MA16_Dca023640 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 2.2e-93
Identity = 189/344 (54.94%), Postives = 225/344 (65.41%), Query Frame = 0

Query: 1    MNAKGEIERYKAHLVAKGYRQKVEYDYNKGFALVAIMETISLILSLAAHFEWVVYQMDVN 60
            MNA+GEI+RYKA LVAKGY QK   DY++ FA V  METI L++S AA FEW +YQMDV 
Sbjct: 722  MNAQGEIDRYKARLVAKGYIQKAGIDYDEVFAPVTRMETIRLLISYAAQFEWPIYQMDVK 781

Query: 61   PAFLNGVIVEEVYVEQSPGY---------------------------------------- 120
             AFLNGVI EE+Y+EQ PGY                                        
Sbjct: 782  SAFLNGVIEEEIYLEQPPGYKKIGEEQKVLKLRKALYGLKQAPRAWNTRIDIYFKKNGFT 841

Query: 121  ---MEHSNY-----------------------NKNLVLDFKHAMTREFEMTDLGLMKYFL 180
                EH+ Y                       N  ++ +FK  M +EFEMTDLGLMKYFL
Sbjct: 842  QCPYEHALYVKKKGGNLLFVALYVDDLLFMGNNGKMIENFKCEMEQEFEMTDLGLMKYFL 901

Query: 181  GLEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEGGDQVNAHGYRS 240
            GLE+RQG  GIFVS EAY+++ILKKNKMEN   V TPMELG K SRF+GGD+V+A  YRS
Sbjct: 902  GLEVRQGKSGIFVSQEAYSKDILKKNKMENCNPVTTPMELGAKFSRFDGGDRVDATKYRS 961

Query: 241  LVGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTESLRLLYTKSSEY 279
            LVGSL YL   RPDI+YS GVVSR +E+  ++H +A+KRILRY+RGTESL L Y+K+ EY
Sbjct: 962  LVGSLRYLTSTRPDISYSVGVVSRFMEEPTYTHWKALKRILRYVRGTESLGLFYSKTDEY 1021

BLAST of Cmc03g0064421 vs. ExPASy TrEMBL
Match: A0A6A3D4Q3 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000340pilonHSYRG00533 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 5.4e-92
Identity = 184/344 (53.49%), Postives = 225/344 (65.41%), Query Frame = 0

Query: 1   MNAKGEIERYKAHLVAKGYRQKVEYDYNKGFALVAIMETISLILSLAAHFEWVVYQMDVN 60
           MNA+GEIERYKA LVAKGYRQK   DY++ FALV  METI L++S  A F+W ++QMDV 
Sbjct: 434 MNAQGEIERYKAMLVAKGYRQKAGIDYDEMFALVTRMETIRLLISQTAQFKWKIFQMDVK 493

Query: 61  PAFLNGVIVEEVYVEQSPGYM--------------------------------------- 120
             FLNGV+ EEVYVEQ P YM                                       
Sbjct: 494 STFLNGVLEEEVYVEQPPRYMKIGEEKKVLKLKKALYGLKQALRTWNTCIDTYFKKNGFT 553

Query: 121 ----EHSNY-----------------------NKNLVLDFKHAMTREFEMTDLGLMKYFL 180
               EH+ Y                       N+ ++ DFK AMTREFEMT+LGLMKYFL
Sbjct: 554 QCPYEHALYVKKEKGNLLFVALYVDDLIFMGNNEEMIKDFKEAMTREFEMTNLGLMKYFL 613

Query: 181 GLEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEGGDQVNAHGYRS 240
           GLE+RQ N GIFVS E YA+ ILK+NKME+   V TPME G KLS+F+GG++V+A  YRS
Sbjct: 614 GLEVRQENIGIFVSQEKYAKEILKRNKMEDCNPVLTPMEPGAKLSKFDGGERVDATKYRS 673

Query: 241 LVGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTESLRLLYTKSSEY 279
           LVGSL YL C R DI+YS  VVSR +E+  ++HL+A+KRILRYI GTESL L YTK+ ++
Sbjct: 674 LVGSLRYLTCTRSDISYSVSVVSRFMEEPVYTHLKAVKRILRYIHGTESLGLFYTKAEDF 733

BLAST of Cmc03g0064421 vs. ExPASy TrEMBL
Match: A0A6A2YCU6 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112000pilonHSYRG00251 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 6.6e-90
Identity = 181/344 (52.62%), Postives = 224/344 (65.12%), Query Frame = 0

Query: 1    MNAKGEIERYKAHLVAKGYRQKVEYDYNKGFALVAIMETISLILSLAAHFEWVVYQMDVN 60
            MNA+GEIERYKA LVAKGY+QK   DY++ FA VA METI L++S AA F+W ++QMDV 
Sbjct: 700  MNAQGEIERYKARLVAKGYKQKAGIDYDEVFAPVARMETIRLLISQAAQFKWPIFQMDVK 759

Query: 61   PAFLNGVIVEEVYVEQSPGYM--------------------------------------- 120
             AFLNGV+ E++Y+EQ PGY+                                       
Sbjct: 760  SAFLNGVLEEDIYIEQPPGYVKVEEDKKVLKLKKALYGLKQAPRAWNTRIDTYFMENGFK 819

Query: 121  ----EHSNY-----------------------NKNLVLDFKHAMTREFEMTDLGLMKYFL 180
                EH+ Y                       N  ++ +FK  MTREFEMTDLGLMK+FL
Sbjct: 820  KCPYEHALYAKKNGGNVLFVALYVDDLIFMGNNDEMIEEFKGTMTREFEMTDLGLMKFFL 879

Query: 181  GLEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEGGDQVNAHGYRS 240
            GLE+RQ   GIFVS E YA+ ILKK  MEN   V+TPME G KLS+F+GG++V+A  YRS
Sbjct: 880  GLEVRQVETGIFVSQETYAKEILKKYNMENCNPVSTPMEPGAKLSKFDGGERVDASRYRS 939

Query: 241  LVGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTESLRLLYTKSSEY 279
            LVGSL YL C RPD++ S G+VSR +E+  +SH +A+KRILRYI+GT SL L Y+K+ +Y
Sbjct: 940  LVGSLRYLTCTRPDLSLSVGIVSRFMEEPVYSHWKALKRILRYIQGTVSLGLFYSKAEDY 999

BLAST of Cmc03g0064421 vs. ExPASy TrEMBL
Match: A0A059QBK0 (Polyprotein OS=Phaseolus vulgaris OX=3885 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 1.1e-89
Identity = 181/344 (52.62%), Postives = 223/344 (64.83%), Query Frame = 0

Query: 1    MNAKGEIERYKAHLVAKGYRQKVEYDYNKGFALVAIMETISLILSLAAHFEWVVYQMDVN 60
            MNA+GEIERYKA LVAKGY+QK   DY++ FA V  METI L++S AA F+W ++QMDV 
Sbjct: 888  MNAQGEIERYKARLVAKGYKQKEGIDYDEVFAPVVRMETIRLLISQAAQFKWPIFQMDVK 947

Query: 61   PAFLNGVIVEEVYVEQSPGYM--------------------------------------- 120
             AFLNGV+ EEVY+EQ PGYM                                       
Sbjct: 948  SAFLNGVLEEEVYIEQPPGYMKIGEEKKVLKLKKALYGLKQAPRAWNTRIDTYFKENGFK 1007

Query: 121  ----EHSNYNKN-----------------------LVLDFKHAMTREFEMTDLGLMKYFL 180
                EH+ Y KN                       ++ +FK  M REFEMTDLGLMK+FL
Sbjct: 1008 QCPYEHALYAKNNGGNMIFVALYVDDLIFMGNNNDMIEEFKGTMRREFEMTDLGLMKFFL 1067

Query: 181  GLEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEGGDQVNAHGYRS 240
            GLE+RQ   GIFVS E YA+ ILKK KMEN   V+ PME G KLS+F+GG++V+A  YRS
Sbjct: 1068 GLEVRQKETGIFVSQEKYAKEILKKYKMENCNPVSIPMEPGAKLSKFDGGERVDASRYRS 1127

Query: 241  LVGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTESLRLLYTKSSEY 279
            LVGSL YL C RPD++ S G++SR +E+  +SH +A+KR+LRYI+GT SL L Y+K+ +Y
Sbjct: 1128 LVGSLRYLTCTRPDLSLSVGIISRFMEEPVYSHWKALKRVLRYIQGTVSLGLFYSKAEDY 1187

BLAST of Cmc03g0064421 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 160.6 bits (405), Expect = 1.8e-39
Identity = 103/346 (29.77%), Postives = 166/346 (47.98%), Query Frame = 0

Query: 2   NAKGEIERYKAHLVAKGYRQKVEYDYNKGFALVAIMETISLILSLAAHFEWVVYQMDVNP 61
           N+ G IERYKA LVAKGY Q+   D+ + F+ V  + ++ LIL+++A + + ++Q+D++ 
Sbjct: 138 NSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISN 197

Query: 62  AFLNGVIVEEVYVEQSPGY----------------------------------------- 121
           AFLNG + EE+Y++  PGY                                         
Sbjct: 198 AFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGF 257

Query: 122 ---MEHSNY--------------------------NKNLVLDFKHAMTREFEMTDLGLMK 181
                HS++                          N   V + K  +   F++ DLG +K
Sbjct: 258 GFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLK 317

Query: 182 YFLGLEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTKLSRFEGGDQVNAHG 241
           YFLGLEI +   GI +    YA ++L +  +   K  + PM+     S   GGD V+A  
Sbjct: 318 YFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKA 377

Query: 242 YRSLVGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTESLRLLYTKS 278
           YR L+G L YL   R DI+++   +S+  E  R +H +A+ +IL YI+GT    L Y+  
Sbjct: 378 YRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQ 437

BLAST of Cmc03g0064421 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-24
Identity = 58/180 (32.22%), Postives = 99/180 (55.00%), Query Frame = 0

Query: 98  MTREFEMTDLGLMKYFLGLEIRQGNFGIFVSWEAYARNILKKNKMENYKLVATPMELGTK 157
           ++  F M DLG + YFLG++I+    G+F+S   YA  IL    M + K ++TP+ L   
Sbjct: 27  LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN 86

Query: 158 LSRFEGGDQVNAHGYRSLVGSLGYLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRY 217
            S        +   +RS+VG+L YL   RPDI+Y+  +V + + +   +  + +KR+LRY
Sbjct: 87  -SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRY 146

Query: 218 IRGTESLRLLYTKSSEYKLIGYLDSNWCGDIDDRKSMRGYVFYMENTTFTWLSKKQPIVT 277
           ++GT    L   K+S+  +  + DS+W G    R+S  G+  ++     +W +K+QP V+
Sbjct: 147 VKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVS 205

BLAST of Cmc03g0064421 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-08
Identity = 24/77 (31.17%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 181 YLACIRPDIAYSAGVVSRCLEDSRHSHLEAIKRILRYIRGTESLRLLYTKSSEYKLIGYL 240
           YL   RPD+ ++   +S+    SR + ++A+ ++L Y++GT    L Y+ +S+ +L  + 
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61

Query: 241 DSNWCGDIDDRKSMRGY 258
           DS+W    D R+S+ G+
Sbjct: 62  DSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0058967.19.7e-96100.00Tpv2-1c [Cucumis melo var. makuwa] >TYK10999.1 Tpv2-1c [Cucumis melo var. makuwa... [more]
PKU83305.14.5e-9354.94Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatu... [more]
KAE8735514.11.1e-9153.49hypothetical protein F3Y22_tig00000340pilonHSYRG00533 [Hibiscus syriacus][more]
KAE8671027.11.4e-8952.62hypothetical protein F3Y22_tig00112000pilonHSYRG00251 [Hibiscus syriacus][more]
AGW47867.12.3e-8952.62polyprotein [Phaseolus vulgaris][more]
Match NameE-valueIdentityDescription
Q94HW23.5e-4031.07Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT942.5e-3830.47Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P041462.1e-3730.70Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P109784.8e-3733.24Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P925191.8e-2332.22Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A5D3CL834.7e-96100.00Tpv2-1c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00360 PE=4 S... [more]
A0A2I0X5W42.2e-9354.94Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catena... [more]
A0A6A3D4Q35.4e-9253.49Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000340pilon... [more]
A0A6A2YCU66.6e-9052.62Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112000pilon... [more]
A0A059QBK01.1e-8952.62Polyprotein OS=Phaseolus vulgaris OX=3885 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G23160.11.8e-3929.77cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.11.3e-2432.22DNA/RNA polymerases superfamily protein [more]
ATMG00240.11.6e-0831.17Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 8..92
e-value: 2.8E-21
score: 76.2
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 85..261
coord: 2..83
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 3..276

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc03g0064421.1Cmc03g0064421.1mRNA