Cmc02g0052381 (gene) Melon (Charmono) v1.1

Overview
NameCmc02g0052381
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCMiso1.1chr02: 19695169 .. 19696009 (+)
RNA-Seq ExpressionCmc02g0052381
SyntenyCmc02g0052381
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATACAGAAAATGAGACTGGACGACGTGACATTTGTAGGGCTTCTCTTGGCTTGCACACACGGAGGCATGGTTACAGAAGGTCGACAACTCTTTGAATCAATGGAGAGTAAGTTTCAAATTGCTCCCAAATTGGAGCACTATGGCTGCTTGGTAGATTTATTAGGGAGAGCTGGAGAGCTACATGAAGCTTACAATCTCATTCAAAACATGCCAATGGCTCCTGACTCTGTTATATGGGGAACTCTTTTGGGAGCTTGTAGCTTCCATGGAAATGTTGAATTGGGTGAAGTAGCAGCTGAGTCCCTCTTCAAGCTTGAGCCATGGAACCCTGGAAATTATGTCATTCTTTCTAACATTTACGCCAAGGCTGGTGATTGGTCTGGAGTTGCAAGGTTAAGGAAGATGATGAAAGGAGCACATATTACAAAGAGAGCAGGATATAGTTATATTGAAGTGGGAGATGGGATTCATGAGTTCATTGTAGAAGATAGATCACATTTGAAGAGTGGTGAAATATATGCTTTACTTCATAGGATTTATGCCATTATTAAACTTCATAAGCATGCACATCACGATCAAAACGAAGATGAAGAACTACTCAATTCTTAGTAAGTTTTTGGCGGTTTGATTGAAATGTTTATATTGCTTCATGGTTATGGTATTAGATATGATTATGGTTTATAAGGACAATCGTCAAAAATGGTAAAATTGGTAAAATATTTCTACTTCATGGCAAAATCGTAAGTAGTCGAATTTTGTACTTGGTTTGTGTCATAAAGTGTTAATACTTTTATACCTATGAATTTTACTCATTTAAAATGATGGTACTTTTTTTATCAT

mRNA sequence

GATACAGAAAATGAGACTGGACGACGTGACATTTGTAGGGCTTCTCTTGGCTTGCACACACGGAGGCATGGTTACAGAAGGTCGACAACTCTTTGAATCAATGGAGAGTAAGTTTCAAATTGCTCCCAAATTGGAGCACTATGGCTGCTTGGTAGATTTATTAGGGAGAGCTGGAGAGCTACATGAAGCTTACAATCTCATTCAAAACATGCCAATGGCTCCTGACTCTGTTATATGGGGAACTCTTTTGGGAGCTTGTAGCTTCCATGGAAATGTTGAATTGGGTGAAGTAGCAGCTGAGTCCCTCTTCAAGCTTGAGCCATGGAACCCTGGAAATTATGTCATTCTTTCTAACATTTACGCCAAGGCTGGTGATTGGTCTGGAGTTGCAAGGTTAAGGAAGATGATGAAAGGAGCACATATTACAAAGAGAGCAGGATATAGTTATATTGAAGTGGGAGATGGGATTCATGAGTTCATTGTAGAAGATAGATCACATTTGAAGAGTGGTGAAATATATGCTTTACTTCATAGGATTTATGCCATTATTAAACTTCATAAGCATGCACATCACGATCAAAACGAAGATGAAGAACTACTCAATTCTTAGTAAGTTTTTGGCGGTTTGATTGAAATGTTTATATTGCTTCATGGTTATGGTATTAGATATGATTATGGTTTATAAGGACAATCGTCAAAAATGGTAAAATTGGTAAAATATTTCTACTTCATGGCAAAATCGTAAGTAGTCGAATTTTGTACTTGGTTTGTGTCATAAAGTGTTAATACTTTTATACCTATGAATTTTACTCATTTAAAATGATGGTACTTTTTTTATCAT

Coding sequence (CDS)

ATGAGACTGGACGACGTGACATTTGTAGGGCTTCTCTTGGCTTGCACACACGGAGGCATGGTTACAGAAGGTCGACAACTCTTTGAATCAATGGAGAGTAAGTTTCAAATTGCTCCCAAATTGGAGCACTATGGCTGCTTGGTAGATTTATTAGGGAGAGCTGGAGAGCTACATGAAGCTTACAATCTCATTCAAAACATGCCAATGGCTCCTGACTCTGTTATATGGGGAACTCTTTTGGGAGCTTGTAGCTTCCATGGAAATGTTGAATTGGGTGAAGTAGCAGCTGAGTCCCTCTTCAAGCTTGAGCCATGGAACCCTGGAAATTATGTCATTCTTTCTAACATTTACGCCAAGGCTGGTGATTGGTCTGGAGTTGCAAGGTTAAGGAAGATGATGAAAGGAGCACATATTACAAAGAGAGCAGGATATAGTTATATTGAAGTGGGAGATGGGATTCATGAGTTCATTGTAGAAGATAGATCACATTTGAAGAGTGGTGAAATATATGCTTTACTTCATAGGATTTATGCCATTATTAAACTTCATAAGCATGCACATCACGATCAAAACGAAGATGAAGAACTACTCAATTCTTAG

Protein sequence

MRLDDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKAGDWSGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAIIKLHKHAHHDQNEDEELLNS
Homology
BLAST of Cmc02g0052381 vs. NCBI nr
Match: XP_008453708.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g08510-like [Cucumis melo])

HSP 1 Score: 415.6 bits (1067), Expect = 2.4e-112
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0

Query: 1   MRLDDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEA 60
           MRLDDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEA
Sbjct: 88  MRLDDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEA 147

Query: 61  YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKA 120
           YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKA
Sbjct: 148 YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKA 207

Query: 121 GDWSGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAII 180
           GDWSGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAII
Sbjct: 208 GDWSGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAII 267

Query: 181 KLHKHAHHDQNEDEELLNS 200
           KLHKHAHHDQNEDEELLNS
Sbjct: 268 KLHKHAHHDQNEDEELLNS 286

BLAST of Cmc02g0052381 vs. NCBI nr
Match: XP_031745381.1 (pentatricopeptide repeat-containing protein At5g08510-like [Cucumis sativus])

HSP 1 Score: 392.9 bits (1008), Expect = 1.7e-105
Identity = 188/199 (94.47%), Postives = 190/199 (95.48%), Query Frame = 0

Query: 1   MRLDDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEA 60
           MR DDVTFVGLLLACTHGGMV EGRQLFESMESKFQ+APKLEHYGCLVDLLGRAGEL EA
Sbjct: 254 MRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEA 313

Query: 61  YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKA 120
           YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYA A
Sbjct: 314 YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYALA 373

Query: 121 GDWSGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAII 180
           GDWSGVARLRKMMKG HITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLH+IY II
Sbjct: 374 GDWSGVARLRKMMKGGHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHKIYDII 433

Query: 181 KLHKHAHHDQNEDEELLNS 200
           KLHKH HHD NEDEELL S
Sbjct: 434 KLHKHVHHDPNEDEELLYS 452

BLAST of Cmc02g0052381 vs. NCBI nr
Match: KAE8637264.1 (hypothetical protein CSA_017680 [Cucumis sativus])

HSP 1 Score: 392.9 bits (1008), Expect = 1.7e-105
Identity = 188/199 (94.47%), Postives = 190/199 (95.48%), Query Frame = 0

Query: 1   MRLDDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEA 60
           MR DDVTFVGLLLACTHGGMV EGRQLFESMESKFQ+APKLEHYGCLVDLLGRAGEL EA
Sbjct: 259 MRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEA 318

Query: 61  YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKA 120
           YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYA A
Sbjct: 319 YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYALA 378

Query: 121 GDWSGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAII 180
           GDWSGVARLRKMMKG HITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLH+IY II
Sbjct: 379 GDWSGVARLRKMMKGGHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHKIYDII 438

Query: 181 KLHKHAHHDQNEDEELLNS 200
           KLHKH HHD NEDEELL S
Sbjct: 439 KLHKHVHHDPNEDEELLYS 457

BLAST of Cmc02g0052381 vs. NCBI nr
Match: XP_011660274.1 (pentatricopeptide repeat-containing protein At5g08510 [Cucumis sativus] >KGN66775.1 hypothetical protein Csa_007193 [Cucumis sativus])

HSP 1 Score: 392.9 bits (1008), Expect = 1.7e-105
Identity = 188/199 (94.47%), Postives = 190/199 (95.48%), Query Frame = 0

Query: 1   MRLDDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEA 60
           MR DDVTFVGLLLACTHGGMV EGRQLFESMESKFQ+APKLEHYGCLVDLLGRAGEL EA
Sbjct: 313 MRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEA 372

Query: 61  YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKA 120
           YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYA A
Sbjct: 373 YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYALA 432

Query: 121 GDWSGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAII 180
           GDWSGVARLRKMMKG HITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLH+IY II
Sbjct: 433 GDWSGVARLRKMMKGGHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHKIYDII 492

Query: 181 KLHKHAHHDQNEDEELLNS 200
           KLHKH HHD NEDEELL S
Sbjct: 493 KLHKHVHHDPNEDEELLYS 511

BLAST of Cmc02g0052381 vs. NCBI nr
Match: XP_038877076.1 (pentatricopeptide repeat-containing protein At5g08510-like [Benincasa hispida])

HSP 1 Score: 372.9 bits (956), Expect = 1.8e-99
Identity = 179/199 (89.95%), Postives = 184/199 (92.46%), Query Frame = 0

Query: 1   MRLDDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEA 60
           MR DDVTFVGLLLACTHGGMV EGRQ+FESMES FQIAPKLEHYGCLVDLLGRAGEL EA
Sbjct: 314 MRPDDVTFVGLLLACTHGGMVAEGRQIFESMESMFQIAPKLEHYGCLVDLLGRAGELQEA 373

Query: 61  YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKA 120
           Y LIQNMPMAPDSVIWG LLGACSFHGNVELGEVAAESLF LEPWNPGNYVILSNIYA A
Sbjct: 374 YRLIQNMPMAPDSVIWGALLGACSFHGNVELGEVAAESLFNLEPWNPGNYVILSNIYASA 433

Query: 121 GDWSGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAII 180
           GDWSGVARLRKMMKG  ITKRAGYSYIEVGDGIHEFIVEDRSHL+SGEIYALLH IY II
Sbjct: 434 GDWSGVARLRKMMKGGQITKRAGYSYIEVGDGIHEFIVEDRSHLRSGEIYALLHGIYDII 493

Query: 181 KLHKHAHHDQNEDEELLNS 200
           KLHK+ HH+QNEDE L +S
Sbjct: 494 KLHKNTHHNQNEDELLYSS 512

BLAST of Cmc02g0052381 vs. ExPASy Swiss-Prot
Match: Q9FNN7 (Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E20 PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 7.1e-67
Identity = 120/194 (61.86%), Postives = 151/194 (77.84%), Query Frame = 0

Query: 4   DDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEAYNL 63
           D VTFVGLLLAC HGGMV +G++LF+SME   +I+PKLEHYGC++DLLGR G+L EAY+L
Sbjct: 316 DAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDL 375

Query: 64  IQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKAGDW 123
           I+ MPM PD+V+WGTLLGACSFHGNVE+ E+A+E+LFKLEP NPGN VI+SNIYA    W
Sbjct: 376 IKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKW 435

Query: 124 SGVARLRKMMKGAHITKRAGYSY-IEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAIIKL 183
            GV R+RK+MK   +TK AGYSY +EVG  +H+F VED+SH +S EIY +L  I+  +KL
Sbjct: 436 DGVLRMRKLMKKETMTKAAGYSYFVEVGVDVHKFTVEDKSHPRSYEIYQVLEEIFRRMKL 495

Query: 184 HKHAHHDQNEDEEL 197
            K       + E+L
Sbjct: 496 EKSRFDSLLQPEQL 509

BLAST of Cmc02g0052381 vs. ExPASy Swiss-Prot
Match: Q9LS72 (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E27 PE=2 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 4.2e-51
Identity = 90/173 (52.02%), Postives = 119/173 (68.79%), Query Frame = 0

Query: 1   MRLDDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEA 60
           +R D VTF+ +L +C H G++ EG   F SME  + + P++EHYGCLVDLLGR G L EA
Sbjct: 412 IRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEA 471

Query: 61  YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKA 120
             ++Q MPM P+ VIWG LLGAC  H  V++ +   ++L KL+P +PGNY +LSNIYA A
Sbjct: 472 IKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAA 531

Query: 121 GDWSGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALL 174
            DW GVA +R  MK   + K +G S +E+ DGIHEF V D+SH KS +IY +L
Sbjct: 532 EDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQML 584

BLAST of Cmc02g0052381 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.6e-50
Identity = 90/178 (50.56%), Postives = 123/178 (69.10%), Query Frame = 0

Query: 4   DDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEAYNL 63
           DD+TFVGLL AC+H GM+  GR +F +M   +++ PKLEHYGC++DLLG +G   EA  +
Sbjct: 469 DDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEM 528

Query: 64  IQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKAGDW 123
           I  M M PD VIW +LL AC  HGNVELGE  AE+L K+EP NPG+YV+LSNIYA AG W
Sbjct: 529 INMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRW 588

Query: 124 SGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAIIK 182
           + VA+ R ++    + K  G S IE+   +HEFI+ D+ H ++ EIY +L  +  +++
Sbjct: 589 NEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLE 646

BLAST of Cmc02g0052381 vs. ExPASy Swiss-Prot
Match: Q9SZT8 (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELI1 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.0e-49
Identity = 94/179 (52.51%), Postives = 120/179 (67.04%), Query Frame = 0

Query: 5   DVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEAYNLI 64
           D+TF+G L AC H G+V EG ++FESM  ++ I PK+EHYGCLV LLGRAG+L  AY  I
Sbjct: 361 DITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETI 420

Query: 65  QNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKAGDWS 124
           +NM M  DSV+W ++LG+C  HG+  LG+  AE L  L   N G YV+LSNIYA  GD+ 
Sbjct: 421 KNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYE 480

Query: 125 GVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAIIKLH 184
           GVA++R +MK   I K  G S IE+ + +HEF   DR H KS EIY +L +I   IK H
Sbjct: 481 GVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSH 539

BLAST of Cmc02g0052381 vs. ExPASy Swiss-Prot
Match: Q9SHZ8 (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H41 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.6e-47
Identity = 87/181 (48.07%), Postives = 117/181 (64.64%), Query Frame = 0

Query: 1   MRLDDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEA 60
           +R D +T+VG+  ACTH G+V +GRQ F+ M+   +I P L HY C+VDL GRAG L EA
Sbjct: 511 LRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEA 570

Query: 61  YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKA 120
              I+ MP+ PD V WG+LL AC  H N++LG+VAAE L  LEP N G Y  L+N+Y+  
Sbjct: 571 QEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSAC 630

Query: 121 GDWSGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAII 180
           G W   A++RK MK   + K  G+S+IEV   +H F VED +H +  EIY  + +I+  I
Sbjct: 631 GKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEI 690

Query: 181 K 182
           K
Sbjct: 691 K 691

BLAST of Cmc02g0052381 vs. ExPASy TrEMBL
Match: A0A1S3BWD4 (pentatricopeptide repeat-containing protein At5g08510-like OS=Cucumis melo OX=3656 GN=LOC103494357 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.2e-112
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0

Query: 1   MRLDDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEA 60
           MRLDDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEA
Sbjct: 88  MRLDDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEA 147

Query: 61  YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKA 120
           YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKA
Sbjct: 148 YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKA 207

Query: 121 GDWSGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAII 180
           GDWSGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAII
Sbjct: 208 GDWSGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAII 267

Query: 181 KLHKHAHHDQNEDEELLNS 200
           KLHKHAHHDQNEDEELLNS
Sbjct: 268 KLHKHAHHDQNEDEELLNS 286

BLAST of Cmc02g0052381 vs. ExPASy TrEMBL
Match: A0A0A0LY28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690140 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 8.0e-106
Identity = 188/199 (94.47%), Postives = 190/199 (95.48%), Query Frame = 0

Query: 1   MRLDDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEA 60
           MR DDVTFVGLLLACTHGGMV EGRQLFESMESKFQ+APKLEHYGCLVDLLGRAGEL EA
Sbjct: 313 MRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEA 372

Query: 61  YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKA 120
           YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYA A
Sbjct: 373 YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYALA 432

Query: 121 GDWSGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAII 180
           GDWSGVARLRKMMKG HITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLH+IY II
Sbjct: 433 GDWSGVARLRKMMKGGHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHKIYDII 492

Query: 181 KLHKHAHHDQNEDEELLNS 200
           KLHKH HHD NEDEELL S
Sbjct: 493 KLHKHVHHDPNEDEELLYS 511

BLAST of Cmc02g0052381 vs. ExPASy TrEMBL
Match: A0A6J1D2G9 (pentatricopeptide repeat-containing protein At5g08510 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016399 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.5e-96
Identity = 175/199 (87.94%), Postives = 181/199 (90.95%), Query Frame = 0

Query: 1   MRLDDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEA 60
           +R DDVTF+GLLLACTHGGMV +GRQLFESMESKFQIAPKLEHYGCLVDLLGRAGEL EA
Sbjct: 313 IRPDDVTFIGLLLACTHGGMVAKGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELEEA 372

Query: 61  YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKA 120
           YNLIQ MPM PDSVIWG LLGACSFHG+VEL EVAAESLFKLEPWNPGNYVILSNIYA A
Sbjct: 373 YNLIQTMPMVPDSVIWGALLGACSFHGSVELAEVAAESLFKLEPWNPGNYVILSNIYASA 432

Query: 121 GDWSGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAII 180
           GDW GVARLRK MKG HITKRAGYSYIEVGDGIHEFIVEDRSHLKS EIYALLH IY+II
Sbjct: 433 GDWRGVARLRKTMKGGHITKRAGYSYIEVGDGIHEFIVEDRSHLKSDEIYALLHGIYSII 492

Query: 181 KLHKHAHHDQNEDEELLNS 200
           KL K A H QNE EELL+S
Sbjct: 493 KLQKPALHSQNEGEELLHS 511

BLAST of Cmc02g0052381 vs. ExPASy TrEMBL
Match: A0A6J1D160 (pentatricopeptide repeat-containing protein At5g08510 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016399 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.1e-94
Identity = 170/192 (88.54%), Postives = 175/192 (91.15%), Query Frame = 0

Query: 1   MRLDDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEA 60
           +R DDVTF+GLLLACTHGGMV +GRQLFESMESKFQIAPKLEHYGCLVDLLGRAGEL EA
Sbjct: 313 IRPDDVTFIGLLLACTHGGMVAKGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELEEA 372

Query: 61  YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKA 120
           YNLIQ MPM PDSVIWG LLGACSFHG+VEL EVAAESLFKLEPWNPGNYVILSNIYA A
Sbjct: 373 YNLIQTMPMVPDSVIWGALLGACSFHGSVELAEVAAESLFKLEPWNPGNYVILSNIYASA 432

Query: 121 GDWSGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAII 180
           GDW GVARLRK MKG HITKRAGYSYIEVGDGIHEFIVEDRSHLKS EIYALLH IY+II
Sbjct: 433 GDWRGVARLRKTMKGGHITKRAGYSYIEVGDGIHEFIVEDRSHLKSDEIYALLHGIYSII 492

Query: 181 KLHKHAHHDQNE 193
           KL K A H QNE
Sbjct: 493 KLQKPALHSQNE 504

BLAST of Cmc02g0052381 vs. ExPASy TrEMBL
Match: A0A6J1ISU4 (pentatricopeptide repeat-containing protein At5g08510 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479063 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.5e-91
Identity = 169/196 (86.22%), Postives = 175/196 (89.29%), Query Frame = 0

Query: 2   RLDDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEAY 61
           R DDVTFVGLLLACTHGGMV +GRQ+FESME KFQIAPKLEHYGCLVDLLGRAGE+ EAY
Sbjct: 314 RPDDVTFVGLLLACTHGGMVAKGRQIFESMEIKFQIAPKLEHYGCLVDLLGRAGEIEEAY 373

Query: 62  NLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKAG 121
           +LIQ+MPM PDSVIWG LLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYA AG
Sbjct: 374 SLIQSMPMFPDSVIWGALLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYASAG 433

Query: 122 DWSGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAIIK 181
           DWSGVAR+RKMMKG HI KRAG SYIEVGDGIHEFIVEDRSH KS EIYALLH IYAIIK
Sbjct: 434 DWSGVARVRKMMKGGHIRKRAGCSYIEVGDGIHEFIVEDRSHPKSDEIYALLHAIYAIIK 493

Query: 182 LHKHAHHDQNEDEELL 198
           L     H QNE EE L
Sbjct: 494 L-----HSQNEGEEEL 504

BLAST of Cmc02g0052381 vs. TAIR 10
Match: AT5G08510.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 255.0 bits (650), Expect = 5.0e-68
Identity = 120/194 (61.86%), Postives = 151/194 (77.84%), Query Frame = 0

Query: 4   DDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEAYNL 63
           D VTFVGLLLAC HGGMV +G++LF+SME   +I+PKLEHYGC++DLLGR G+L EAY+L
Sbjct: 316 DAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDL 375

Query: 64  IQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKAGDW 123
           I+ MPM PD+V+WGTLLGACSFHGNVE+ E+A+E+LFKLEP NPGN VI+SNIYA    W
Sbjct: 376 IKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKW 435

Query: 124 SGVARLRKMMKGAHITKRAGYSY-IEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAIIKL 183
            GV R+RK+MK   +TK AGYSY +EVG  +H+F VED+SH +S EIY +L  I+  +KL
Sbjct: 436 DGVLRMRKLMKKETMTKAAGYSYFVEVGVDVHKFTVEDKSHPRSYEIYQVLEEIFRRMKL 495

Query: 184 HKHAHHDQNEDEEL 197
            K       + E+L
Sbjct: 496 EKSRFDSLLQPEQL 509

BLAST of Cmc02g0052381 vs. TAIR 10
Match: AT3G29230.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 202.6 bits (514), Expect = 3.0e-52
Identity = 90/173 (52.02%), Postives = 119/173 (68.79%), Query Frame = 0

Query: 1   MRLDDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEA 60
           +R D VTF+ +L +C H G++ EG   F SME  + + P++EHYGCLVDLLGR G L EA
Sbjct: 412 IRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEA 471

Query: 61  YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKA 120
             ++Q MPM P+ VIWG LLGAC  H  V++ +   ++L KL+P +PGNY +LSNIYA A
Sbjct: 472 IKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAA 531

Query: 121 GDWSGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALL 174
            DW GVA +R  MK   + K +G S +E+ DGIHEF V D+SH KS +IY +L
Sbjct: 532 EDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQML 584

BLAST of Cmc02g0052381 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-51
Identity = 90/178 (50.56%), Postives = 123/178 (69.10%), Query Frame = 0

Query: 4   DDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEAYNL 63
           DD+TFVGLL AC+H GM+  GR +F +M   +++ PKLEHYGC++DLLG +G   EA  +
Sbjct: 469 DDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEM 528

Query: 64  IQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKAGDW 123
           I  M M PD VIW +LL AC  HGNVELGE  AE+L K+EP NPG+YV+LSNIYA AG W
Sbjct: 529 INMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRW 588

Query: 124 SGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAIIK 182
           + VA+ R ++    + K  G S IE+   +HEFI+ D+ H ++ EIY +L  +  +++
Sbjct: 589 NEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLE 646

BLAST of Cmc02g0052381 vs. TAIR 10
Match: AT4G37380.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 198.0 bits (502), Expect = 7.3e-51
Identity = 94/179 (52.51%), Postives = 120/179 (67.04%), Query Frame = 0

Query: 5   DVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEAYNLI 64
           D+TF+G L AC H G+V EG ++FESM  ++ I PK+EHYGCLV LLGRAG+L  AY  I
Sbjct: 361 DITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETI 420

Query: 65  QNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKAGDWS 124
           +NM M  DSV+W ++LG+C  HG+  LG+  AE L  L   N G YV+LSNIYA  GD+ 
Sbjct: 421 KNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYE 480

Query: 125 GVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAIIKLH 184
           GVA++R +MK   I K  G S IE+ + +HEF   DR H KS EIY +L +I   IK H
Sbjct: 481 GVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSH 539

BLAST of Cmc02g0052381 vs. TAIR 10
Match: AT2G22070.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-48
Identity = 87/181 (48.07%), Postives = 117/181 (64.64%), Query Frame = 0

Query: 1   MRLDDVTFVGLLLACTHGGMVTEGRQLFESMESKFQIAPKLEHYGCLVDLLGRAGELHEA 60
           +R D +T+VG+  ACTH G+V +GRQ F+ M+   +I P L HY C+VDL GRAG L EA
Sbjct: 511 LRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEA 570

Query: 61  YNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYAKA 120
              I+ MP+ PD V WG+LL AC  H N++LG+VAAE L  LEP N G Y  L+N+Y+  
Sbjct: 571 QEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSAC 630

Query: 121 GDWSGVARLRKMMKGAHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEIYALLHRIYAII 180
           G W   A++RK MK   + K  G+S+IEV   +H F VED +H +  EIY  + +I+  I
Sbjct: 631 GKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEI 690

Query: 181 K 182
           K
Sbjct: 691 K 691

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008453708.12.4e-112100.00PREDICTED: pentatricopeptide repeat-containing protein At5g08510-like [Cucumis m... [more]
XP_031745381.11.7e-10594.47pentatricopeptide repeat-containing protein At5g08510-like [Cucumis sativus][more]
KAE8637264.11.7e-10594.47hypothetical protein CSA_017680 [Cucumis sativus][more]
XP_011660274.11.7e-10594.47pentatricopeptide repeat-containing protein At5g08510 [Cucumis sativus] >KGN6677... [more]
XP_038877076.11.8e-9989.95pentatricopeptide repeat-containing protein At5g08510-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q9FNN77.1e-6761.86Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana OX... [more]
Q9LS724.2e-5152.02Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana OX... [more]
Q9LN011.6e-5050.56Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
Q9SZT81.0e-4952.51Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t... [more]
Q9SHZ81.6e-4748.07Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A1S3BWD41.2e-112100.00pentatricopeptide repeat-containing protein At5g08510-like OS=Cucumis melo OX=36... [more]
A0A0A0LY288.0e-10694.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690140 PE=4 SV=1[more]
A0A6J1D2G91.5e-9687.94pentatricopeptide repeat-containing protein At5g08510 isoform X1 OS=Momordica ch... [more]
A0A6J1D1604.1e-9488.54pentatricopeptide repeat-containing protein At5g08510 isoform X2 OS=Momordica ch... [more]
A0A6J1ISU41.5e-9186.22pentatricopeptide repeat-containing protein At5g08510 isoform X1 OS=Cucurbita ma... [more]
Match NameE-valueIdentityDescription
AT5G08510.15.0e-6861.86Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G29230.13.0e-5252.02Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G08070.11.1e-5150.56Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G37380.17.3e-5152.51Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G22070.11.2e-4848.07pentatricopeptide (PPR) repeat-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..146
e-value: 7.2E-23
score: 83.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 6..34
e-value: 0.21
score: 11.9
coord: 110..135
e-value: 0.89
score: 9.9
coord: 43..67
e-value: 0.076
score: 13.3
NoneNo IPR availablePANTHERPTHR47929FAMILY NOT NAMEDcoord: 4..182
NoneNo IPR availablePANTHERPTHR47929:SF1SUBFAMILY NOT NAMEDcoord: 4..182

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc02g0052381.1Cmc02g0052381.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding