Cmc02g0051221 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0051221
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr02: 17669319 .. 17669903 (+)
RNA-Seq Expression	Cmc02g0051221
Synteny	Cmc02g0051221

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCGGCCATGCAATTAAAGAAGGGTCTCTCTCGAGACGAACCAACATTTATGGCCATCCCACTCAAATCGTCAGAGAACTCAGGGGAGACAGTCCCTAAGGAGATCATGCGCGTGCTAGAGAAATACCGTGATGTGATGCCTGATAGTTTGCCCAAGTCTTTGCCACCTCGGAGAATGATTGATCATGAGATCGAGTTAGTGCCAGGGGCAAAACCGCCTGCGAAGAATGCTTATCGTATGGCACCTCCGGAGTTAGCTGAACTTCGGAAACAGTTAGATGAACTACTGAATGCAGGGTTTATCAGGCCTGCAAAAGCTCCGTATGAGGCCCCAGTTCTTTTCCAAAGGAAGAAGGATGGGAGTTTACGACTGTGCATTGATTATCGCGCCCTAAATAAGCTCACAGTCCGTAACAAGTATCCACTTCCCATAATTACTGACTTGTTCGACCGCTTACATGGGGCAAAGTATTTTTCAAAGTTAGACTTGCGGTCGGGATACTACCAAGTGAGAATTGCAGAGGGAGATGAACCGAAGACAACCTGTGTCACCCGATATGGTGCGTTCGATTCCTCGTAA

mRNA sequence

ATGATCTCGGCCATGCAATTAAAGAAGGGTCTCTCTCGAGACGAACCAACATTTATGGCCATCCCACTCAAATCGTCAGAGAACTCAGGGGAGACAGTCCCTAAGGAGATCATGCGCGTGCTAGAGAAATACCGTGATGTGATGCCTGATAGTTTGCCCAAGTCTTTGCCACCTCGGAGAATGATTGATCATGAGATCGAGTTAGTGCCAGGGGCAAAACCGCCTGCGAAGAATGCTTATCGTATGGCACCTCCGGAGTTAGCTGAACTTCGGAAACAGTTAGATGAACTACTGAATGCAGGGTTTATCAGGCCTGCAAAAGCTCCGTATGAGGCCCCAGTTCTTTTCCAAAGGAAGAAGGATGGGAGTTTACGACTGTGCATTGATTATCGCGCCCTAAATAAGCTCACAGTCCGTAACAAGTATCCACTTCCCATAATTACTGACTTGTTCGACCGCTTACATGGGGCAAAGTATTTTTCAAAGTTAGACTTGCGGTCGGGATACTACCAAGTGAGAATTGCAGAGGGAGATGAACCGAAGACAACCTGTGTCACCCGATATGGTGCGTTCGATTCCTCGTAA

Coding sequence (CDS)

ATGATCTCGGCCATGCAATTAAAGAAGGGTCTCTCTCGAGACGAACCAACATTTATGGCCATCCCACTCAAATCGTCAGAGAACTCAGGGGAGACAGTCCCTAAGGAGATCATGCGCGTGCTAGAGAAATACCGTGATGTGATGCCTGATAGTTTGCCCAAGTCTTTGCCACCTCGGAGAATGATTGATCATGAGATCGAGTTAGTGCCAGGGGCAAAACCGCCTGCGAAGAATGCTTATCGTATGGCACCTCCGGAGTTAGCTGAACTTCGGAAACAGTTAGATGAACTACTGAATGCAGGGTTTATCAGGCCTGCAAAAGCTCCGTATGAGGCCCCAGTTCTTTTCCAAAGGAAGAAGGATGGGAGTTTACGACTGTGCATTGATTATCGCGCCCTAAATAAGCTCACAGTCCGTAACAAGTATCCACTTCCCATAATTACTGACTTGTTCGACCGCTTACATGGGGCAAAGTATTTTTCAAAGTTAGACTTGCGGTCGGGATACTACCAAGTGAGAATTGCAGAGGGAGATGAACCGAAGACAACCTGTGTCACCCGATATGGTGCGTTCGATTCCTCGTAA

Protein sequence

MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFDSS

Homology

[Close]

BLAST of Cmc02g0051221 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 385.2 bits (988), Expect = 3.4e-103
Identity = 190/192 (98.96%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR
Sbjct: 589 MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 648

Query: 61  MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQRKK 120
           MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQRKK
Sbjct: 649 MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 708

Query: 121 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 180
           DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP
Sbjct: 709 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 768

Query: 181 KTTCVTRYGAFD 193
           KTTCVTRYGAF+
Sbjct: 769 KTTCVTRYGAFE 780

[Close]

BLAST of Cmc02g0051221 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 385.2 bits (988), Expect = 3.4e-103
Identity = 190/192 (98.96%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR
Sbjct: 593 MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 652

Query: 61  MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQRKK 120
           MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQRKK
Sbjct: 653 MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 712

Query: 121 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 180
           DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP
Sbjct: 713 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 772

Query: 181 KTTCVTRYGAFD 193
           KTTCVTRYGAF+
Sbjct: 773 KTTCVTRYGAFE 784

[Close]

BLAST of Cmc02g0051221 vs. NCBI nr
Match: KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 385.2 bits (988), Expect = 3.4e-103
Identity = 190/192 (98.96%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR
Sbjct: 593 MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 652

Query: 61  MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQRKK 120
           MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQRKK
Sbjct: 653 MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 712

Query: 121 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 180
           DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP
Sbjct: 713 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 772

Query: 181 KTTCVTRYGAFD 193
           KTTCVTRYGAF+
Sbjct: 773 KTTCVTRYGAFE 784

[Close]

BLAST of Cmc02g0051221 vs. NCBI nr
Match: KAA0032849.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 385.2 bits (988), Expect = 3.4e-103
Identity = 190/192 (98.96%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR
Sbjct: 593 MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 652

Query: 61  MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQRKK 120
           MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQRKK
Sbjct: 653 MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 712

Query: 121 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 180
           DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP
Sbjct: 713 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 772

Query: 181 KTTCVTRYGAFD 193
           KTTCVTRYGAF+
Sbjct: 773 KTTCVTRYGAFE 784

[Close]

BLAST of Cmc02g0051221 vs. NCBI nr
Match: TYK28713.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 385.2 bits (988), Expect = 3.4e-103
Identity = 190/192 (98.96%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR
Sbjct: 593 MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 652

Query: 61  MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQRKK 120
           MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQRKK
Sbjct: 653 MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 712

Query: 121 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 180
           DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP
Sbjct: 713 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 772

Query: 181 KTTCVTRYGAFD 193
           KTTCVTRYGAF+
Sbjct: 773 KTTCVTRYGAFE 784

[Close]

BLAST of Cmc02g0051221 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 120.2 bits (300), Expect = 2.6e-26
Identity = 60/157 (38.22%), Postives = 94/157 (59.87%), Query Frame = 0


Query: 42  EKYRDVMPDSLP------KSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLD 101
           +KYR+++ + LP       ++P    + H+IE+ PGA+ P    Y +      E+ K + 
Sbjct: 562 QKYREIIRNDLPPRPADINNIP----VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQ 621

Query: 102 ELLNAGFIRPAKAPYEAPVLFQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLH 161
           +LL+  FI P+K+P  +PV+   KKDG+ RLC+DYR LNK T+ + +PLP I +L  R+ 
Sbjct: 622 KLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIG 681

Query: 162 GAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFD 193
            A+ F+ LDL SGY+Q+ +   D  KT  VT  G ++
Sbjct: 682 NAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYE 714

[Close]

BLAST of Cmc02g0051221 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 2.6e-26
Identity = 60/157 (38.22%), Postives = 94/157 (59.87%), Query Frame = 0


Query: 42  EKYRDVMPDSLP------KSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLD 101
           +KYR+++ + LP       ++P    + H+IE+ PGA+ P    Y +      E+ K + 
Sbjct: 588 QKYREIIRNDLPPRPADINNIP----VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQ 647

Query: 102 ELLNAGFIRPAKAPYEAPVLFQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLH 161
           +LL+  FI P+K+P  +PV+   KKDG+ RLC+DYR LNK T+ + +PLP I +L  R+ 
Sbjct: 648 KLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIG 707

Query: 162 GAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFD 193
            A+ F+ LDL SGY+Q+ +   D  KT  VT  G ++
Sbjct: 708 NAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYE 740

[Close]

BLAST of Cmc02g0051221 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.5e-26
Identity = 52/70 (74.29%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 123 SLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKT 182
           SLR+CIDYRAL K+T++NKYP+P + DLFDRL  A +F+KLDLRSGY+QVRIA+GDEPKT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 183 TCVTRYGAFD 193
           TCVTRYG+F+
Sbjct: 65  TCVTRYGSFE 74

[Close]

BLAST of Cmc02g0051221 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.8e-22
Identity = 53/159 (33.33%), Postives = 96/159 (60.38%), Query Frame = 0


Query: 36  EIMRVLEKYRDVMPDSLPKSLP-PRRMIDHEIELV-PGAKPPAKNAYRMAPPELAELRKQ 95
           E+  + ++++D+  ++  + LP P + ++ E+EL     + P +N Y + P ++  +  +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432

Query: 96  LDELLNAGFIRPAKAPYEAPVLFQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDR 155
           +++ L +G IR +KA    PV+F  KK+G+LR+ +DY+ LNK    N YPLP+I  L  +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492

Query: 156 LHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFD 193
           + G+  F+KLDL+S Y+ +R+ +GDE K       G F+
Sbjct: 493 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFE 530

[Close]

BLAST of Cmc02g0051221 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.8e-22
Identity = 53/159 (33.33%), Postives = 96/159 (60.38%), Query Frame = 0


Query: 36  EIMRVLEKYRDVMPDSLPKSLP-PRRMIDHEIELV-PGAKPPAKNAYRMAPPELAELRKQ 95
           E+  + ++++D+  ++  + LP P + ++ E+EL     + P +N Y + P ++  +  +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432

Query: 96  LDELLNAGFIRPAKAPYEAPVLFQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDR 155
           +++ L +G IR +KA    PV+F  KK+G+LR+ +DY+ LNK    N YPLP+I  L  +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492

Query: 156 LHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFD 193
           + G+  F+KLDL+S Y+ +R+ +GDE K       G F+
Sbjct: 493 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFE 530

[Close]

BLAST of Cmc02g0051221 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.6e-103
Identity = 190/192 (98.96%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR
Sbjct: 593 MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 652

Query: 61  MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQRKK 120
           MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQRKK
Sbjct: 653 MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 712

Query: 121 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 180
           DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP
Sbjct: 713 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 772

Query: 181 KTTCVTRYGAFD 193
           KTTCVTRYGAF+
Sbjct: 773 KTTCVTRYGAFE 784

[Close]

BLAST of Cmc02g0051221 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.6e-103
Identity = 190/192 (98.96%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR
Sbjct: 593 MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 652

Query: 61  MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQRKK 120
           MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQRKK
Sbjct: 653 MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 712

Query: 121 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 180
           DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP
Sbjct: 713 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 772

Query: 181 KTTCVTRYGAFD 193
           KTTCVTRYGAF+
Sbjct: 773 KTTCVTRYGAFE 784

[Close]

BLAST of Cmc02g0051221 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.6e-103
Identity = 190/192 (98.96%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR
Sbjct: 593 MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 652

Query: 61  MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQRKK 120
           MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQRKK
Sbjct: 653 MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 712

Query: 121 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 180
           DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP
Sbjct: 713 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 772

Query: 181 KTTCVTRYGAFD 193
           KTTCVTRYGAF+
Sbjct: 773 KTTCVTRYGAFE 784

[Close]

BLAST of Cmc02g0051221 vs. ExPASy TrEMBL
Match: A0A5A7T0E2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001310 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.6e-103
Identity = 190/192 (98.96%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR
Sbjct: 593 MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 652

Query: 61  MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQRKK 120
           MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQRKK
Sbjct: 653 MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 712

Query: 121 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 180
           DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP
Sbjct: 713 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 772

Query: 181 KTTCVTRYGAFD 193
           KTTCVTRYGAF+
Sbjct: 773 KTTCVTRYGAFE 784

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BLAST of Cmc02g0051221 vs. ExPASy TrEMBL
Match: A0A5D3B7E7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00360 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.6e-103
Identity = 190/192 (98.96%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR
Sbjct: 593 MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 652

Query: 61  MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQRKK 120
           MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQRKK
Sbjct: 653 MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 712

Query: 121 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 180
           DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP
Sbjct: 713 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 772

Query: 181 KTTCVTRYGAFD 193
           KTTCVTRYGAF+
Sbjct: 773 KTTCVTRYGAFE 784

The following BLAST results are available for this feature:

BLAST of Cmc02g0051221 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067557.1	3.4e-103	98.96	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	3.4e-103	98.96	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]
KAA0063412.1	3.4e-103	98.96	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0032849.1	3.4e-103	98.96	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK28713.1	3.4e-103	98.96	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc02g0051221 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	2.6e-26	38.22	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	2.6e-26	38.22	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P31843	3.5e-26	74.29	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q9UR07	8.8e-22	33.33	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	8.8e-22	33.33	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc02g0051221 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C4R1	1.6e-103	98.96	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	1.6e-103	98.96	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UXR6	1.6e-103	98.96	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]
A0A5A7T0E2	1.6e-103	98.96	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5D3B7E7	1.6e-103	98.96	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of Cmc02g0051221 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 142..169 e-value: 1.4E-50 score: 173.5
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 62..191 e-value: 1.4E-50 score: 173.5
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 31..192
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 31..192
None	No IPR available	CDD	cd01647	RT_LTR	coord: 101..191 e-value: 1.80799E-41 score: 136.186
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 40..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0051221.1	Cmc02g0051221.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding