Cmc01g0026291 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0026291
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA-directed RNA polymerases II and IV subunit 5A
Location	CMiso1.1chr01: 27279063 .. 27282717 (-)
RNA-Seq Expression	Cmc01g0026291
Synteny	Cmc01g0026291

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAACAATGTCTAATAAAATCAGACTAAGCCCTAATTTCTCGTTCCGCCATCTTCTTCTTCACGCCGGCTCCTAACAGCTCAGTGCTGCCGCCGTGTTCTACTGAGTGGGTTTCACTGATTTCTTGTTGTTACTGGTGATTCTCTCAATCCTCATCTATGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTCTATACTTCGAGAAACTCCATTTTGAACTTGTCTAATGAAAGAAAGGAGCAATGCCCATCGTCAAATAATGAACCAATCGGTGCTTTTGAACTTTTTTTTAGTTAATTACAATTTACCATTTACTTTCTACCAATTACTCAGGTGGTGGTAGTGGTATAGCTAGAAGTTTTATACTTCCATAATCCTCAAGGCCTTCATCTCCACAAATGAAAATTTCCTTTTTTAAAAAAAGAAAAAAATTATATGTAAGTTTCTGGACCAGCTTATATCTAGCTCAACCAATTTCACCCGGGAGAACTTTTGGTGTCAAGGAAACCTGTCTGATATTTAATCCCAAATAGGTGACCGTCGACACTGTGGAAGTTATGTTTTCTTTGGTGAAAATAGTTTATGTGTCAAAAATGTTGGTTAAGTGATTAAAAGAATACCTTTTTATTTTAGTAAAGGGCCTAGAGGTAGGCGAAGGCATGTTGGAGACTGCATAAACGAATGACCTCTGTTCCGTTGATTCCCAGCTAGTGTGTTTTGTGTAGAAAGGACTTGGAAGAAAGGCTGCACTTTTTTTTCCTATGACTGTTTGCTGCTTCATTTATTTATTTATCTTTGATAAGAAACAGATTTCATAGATGAATGAAATTTACGTTTGCTGCTTCATTTTGATTCAATCGCTCTTAAATATTTTACTTAATCTGGGTGTCTCCAAGATTTGTTCTTACTTCAGACAGATGCTTTCTATCAGCTGATTTATGGAACCCTCTAAGAATTTCGTGGTATAATTAGACGGTGGCTCTTCTGTAGAGAATTTTGTGCAAAAGAAATAGGACTTTTCTAGGAAATGGCTGTACTCTTGTTGTATACTGGGAAAAAGATGGTTGTCTACTTGGTGTTGGTTGGTAGTTACAATCTTTAGCTTTTCTAATTATGGTTTATCTCAATTTTTTTGTCAATTAGGAGTTCTTTTTGTATCCCCCCTTGGCTTGTAGGGTGGCTTGTAGGGGTTATCTCATTTCCCTTTTTATGTATCTCCCTCTTATTAATGAGATCGTTTTCTTGTTTACTTATTCCTATAGAAGTGTATTGCTAGAGTTCAAGCCATAATAGTCACCCACCCCGAGATTTAATGAGTGTTCTTGACAACCAAATCTAACAGGGTCAGGATGCTTACCTATTAGAATAGTCTAAGTGTGCACGACTTGACCTGAACACTCATGAACATAGAAAAAGAAGGATAAAGTTCAAATCAGGAAGGTCAACTAAGGATATTAAAATTTCTTTTACTTTTGTTTTATGCAAAATCACCATGGCCAAGCTGTTGACTTGTATGGCAGGTTGAAGTGTACATTCGTTGATCCAAACACCTATAGTTGTTTAAAACGATAACAATAGTAAAAGAAGGATATTTATATGTTATGTACACATGTTTGAAAACTGTTGTTGCAGCCTTGCAGGTCTGTGCTTTTCCAGCAGGATTTTATTTTTTTTCTTTAAATTGGTGTCTCCATATTCATAGTATATATTGCTGTTGTGTCCATCATGTTAGCGACTCCAACTTGTTTTGAATTTCTGAAAATGATTGTTTTATTATATCTGTGGTGTGTTCTGTATGTTGTGTCTTATATTGGTTTTGAGATTTCCTGTATGTAATATAGCTATTCAGATTGATGTTACATTAACTTACTCTTATTCATTTACAATGTGCATTATATATTCCTTGTGTACCTATTTAGTGAATGAGAATTGAATTGTTTGACAATGAATTAGCCTGGAACAAGATGGTGCTATCAGAAGAGGAAATCACCAGGCTTTTCAGAATTCGAAAAACCGTGTTTCAAATGCTAAGAGACCGAGGCTATTTTGTTGGAGACTTTGAGATTGACATGACAAGGGAGCAATTTAAGCAAAAATATGGTGAAAACATGAAAAGAGAAGACATTGTTATTAATAAATCCAAGAGAAATGATAGCAGTGATCAGGTATTGTCTCAGAAAGGGGAATATTTTAAATAGTATTTCTCATAGTTATTAAAGTTAAAGTTACAAGAACTACAAGTTTCTCAATGATTCTCTTATTTGTTTACATCCTCTTGTAGTGATATTGATTTTTCCTGTATAGATATATGTTTTTTTTCCAGAAGAGGCAAAGGTTGGCATCAAGCCGTTGAAAACATATACCACCCGAATGAAATCAGAGAATGTTTTTAGAGCAATATTGGTCGTTCAGCAGAATTTGACCCCTTTTGCCCGTGCCTGTATGAGTGAAGCAACTTCCAAATCATTCCACTTGGAAGTTTTCCAGGTGAAAATATTTTGTGGAGTATTTTTATGATTTAAGTTTGAGAAAAACCGAACCACAAGTTAGAGAAGTAAATTAGATTTTTTTCGTGCACCACTAATTTGAGGAGAATCAAAGGAAACCTTCTTACTCTGGAAACTGGAAATCATCTTATGCTTAGTTTGGTTATTCCTTGTTATGCAAAATGACTAAATGAGAATGAAAAATACGGGGGGTTTCTTGGATTCTCTGGTTGAAGAACAATTAAAGGGTTAAGGTAGGGCTTGGTTTCTATAATATTCTTGCTCTTTTCTTAGTTCACTTGAAATATTTAATTTTTATTCTTTTTCTTATCTTCATCTGTTGATGCAGGAAGCAGAATTGCTAGTTAATATCAAAGATCACGTCCTTGTTCCTGAGCACCAGTTACTTACCAATGAAGAGAAAAAGACACTACTTGAGAGATATACCGTGAAAGAAACACAGGTTGGCATTAATTCTTAAGAAAATATAACATTTATGTGAACTTATCTTAAGATCTATGTTGGATATTTCTTACGAAAATATAACATATATATACACATATATATGTTGTTCTGTAAAATGATGGTAGAGTCATGTGCGTTGACTTTCATGACCTCAACAAAGCCAGTCCCTAGGATGATTTTCCTTTGTCACACATTGGGATCTTGGTTAACAATGAAAGGGGCATGAATCATTAGATATCATCATATTATTACTTCACTAATCACAATGCAATCTAGAGGCATATGTCAGGCCAGTCTCCTCTTGTCTACGTTAGTGTCTATATGTGTTTGCATTTCTGTTGCAATATGAAAGAGATACTTAGATGATTTTGCATATTTGGTGTTAGCTACCACGCATACAAGTGACGGACCCAGTTGCACGATATTATGGGCTAAAGCGTGGCCAAGTTGTGAAGATCATCAGACCAAGTGAAACTGCAGGAAGATATGTAACTTACAGATATGTTGTCTGAGTATGTTTATGATTTTGTAATTGAACATTTGACATATGTATACACCTTGAAGTTATGTTTTGAAGTCTTAATTAGTGTTATACTGGTTGTGATATCTGAGGTGAGTTGAAGAACTTTGGAACTTAAGTATTTGGGATTTAGATGGGGGAACTTCATGGTATTAGTTGGAAGATCAATTATTT

mRNA sequence

CCAACAATGTCTAATAAAATCAGACTAAGCCCTAATTTCTCGTTCCGCCATCTTCTTCTTCACGCCGGCTCCTAACAGCTCAGTGCTGCCGCCGTGTTCTACTGAGTGGGTTTCACTGATTTCTTGTTGTTACTGCCTGGAACAAGATGGTGCTATCAGAAGAGGAAATCACCAGGCTTTTCAGAATTCGAAAAACCGTGTTTCAAATGCTAAGAGACCGAGGCTATTTTGTTGGAGACTTTGAGATTGACATGACAAGGGAGCAATTTAAGCAAAAATATGGTGAAAACATGAAAAGAGAAGACATTGTTATTAATAAATCCAAGAGAAATGATAGCAGTGATCAGATATATGTTTTTTTTCCAGAAGAGGCAAAGGTTGGCATCAAGCCGTTGAAAACATATACCACCCGAATGAAATCAGAGAATGTTTTTAGAGCAATATTGGTCGTTCAGCAGAATTTGACCCCTTTTGCCCGTGCCTGTATGAGTGAAGCAACTTCCAAATCATTCCACTTGGAAGTTTTCCAGGAAGCAGAATTGCTAGTTAATATCAAAGATCACGTCCTTGTTCCTGAGCACCAGTTACTTACCAATGAAGAGAAAAAGACACTACTTGAGAGATATACCGTGAAAGAAACACAGCTACCACGCATACAAGTGACGGACCCAGTTGCACGATATTATGGGCTAAAGCGTGGCCAAGTTGTGAAGATCATCAGACCAAGTGAAACTGCAGGAAGATATGTAACTTACAGATATGTTGTCTGAGTATGTTTATGATTTTGTAATTGAACATTTGACATATGTATACACCTTGAAGTTATGTTTTGAAGTCTTAATTAGTGTTATACTGGTTGTGATATCTGAGGTGAGTTGAAGAACTTTGGAACTTAAGTATTTGGGATTTAGATGGGGGAACTTCATGGTATTAGTTGGAAGATCAATTATTT

Coding sequence (CDS)

ATGGTGCTATCAGAAGAGGAAATCACCAGGCTTTTCAGAATTCGAAAAACCGTGTTTCAAATGCTAAGAGACCGAGGCTATTTTGTTGGAGACTTTGAGATTGACATGACAAGGGAGCAATTTAAGCAAAAATATGGTGAAAACATGAAAAGAGAAGACATTGTTATTAATAAATCCAAGAGAAATGATAGCAGTGATCAGATATATGTTTTTTTTCCAGAAGAGGCAAAGGTTGGCATCAAGCCGTTGAAAACATATACCACCCGAATGAAATCAGAGAATGTTTTTAGAGCAATATTGGTCGTTCAGCAGAATTTGACCCCTTTTGCCCGTGCCTGTATGAGTGAAGCAACTTCCAAATCATTCCACTTGGAAGTTTTCCAGGAAGCAGAATTGCTAGTTAATATCAAAGATCACGTCCTTGTTCCTGAGCACCAGTTACTTACCAATGAAGAGAAAAAGACACTACTTGAGAGATATACCGTGAAAGAAACACAGCTACCACGCATACAAGTGACGGACCCAGTTGCACGATATTATGGGCTAAAGCGTGGCCAAGTTGTGAAGATCATCAGACCAAGTGAAACTGCAGGAAGATATGTAACTTACAGATATGTTGTCTGA

Protein sequence

MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSKSFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV

Homology

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BLAST of Cmc01g0026291 vs. NCBI nr
Match: XP_008451219.1 (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo])

HSP 1 Score: 401.4 bits (1030), Expect = 4.8e-108
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
           SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Cmc01g0026291 vs. NCBI nr
Match: KAA0059617.1 (DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo var. makuwa] >TYK08150.1 DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo var. makuwa])

HSP 1 Score: 401.4 bits (1030), Expect = 4.8e-108
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK
Sbjct: 15  MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 74

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK
Sbjct: 75  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 134

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
           SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 135 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 194

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 195 GLKRGQVVKIIRPSETAGRYVTYRYVV 221

[Close]

BLAST of Cmc01g0026291 vs. NCBI nr
Match: XP_004148944.1 (DNA-directed RNA polymerases II and IV subunit 5A [Cucumis sativus] >XP_011659238.1 DNA-directed RNA polymerases II and IV subunit 5A [Cucumis sativus] >KGN44717.1 hypothetical protein Csa_016684 [Cucumis sativus])

HSP 1 Score: 399.4 bits (1025), Expect = 1.8e-107
Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
           SFHLEVFQEAELLVNIKDHVLVPEHQLL NEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Cmc01g0026291 vs. NCBI nr
Match: XP_022143609.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Momordica charantia])

HSP 1 Score: 368.6 bits (945), Expect = 3.5e-98
Identity = 190/207 (91.79%), Postives = 198/207 (95.65%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTV QML+DR YFVGDFEIDM+REQFK KYGENMKREDIVINK++
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEE KVG+K +KTYT RMKSENVFRAILVVQQNLTPFAR C+SE +SK
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
            FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 -FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cmc01g0026291 vs. NCBI nr
Match: XP_022991826.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023547519.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 368.6 bits (945), Expect = 3.5e-98
Identity = 189/207 (91.30%), Postives = 199/207 (96.14%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTV QML+DRGYFVGDFEIDM+REQFK KYGE+MKREDIVINK+K
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEE KVG+K +KTYT RMK+ENVFRAILVVQQNLTPFAR C+SE +SK
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
            FHLEVFQEAELLVN+KDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 -FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cmc01g0026291 vs. ExPASy Swiss-Prot
Match: O81098 (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 4.0e-89
Identity = 163/206 (79.13%), Postives = 191/206 (92.72%), Query Frame = 0


Query: 2   VLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKR 61
           +L+EEE+ RL+RI+KT+ QMLRDRGYF+ D E+ MT++QF +K+G+NMKRED+V  K+KR
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSKS 121
           ND+SDQ+Y+FFP+EAKVG+K +K YT RMKSENVFRAILVVQQNLTPFAR C+SE +SK 
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK- 120

Query: 122 FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 181
           FHLEVFQEAE+LVNIK+HVLVPEHQ+LT EEKKTLLERYTVKETQLPRIQVTDP+ARY+G
Sbjct: 121 FHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFG 180

Query: 182 LKRGQVVKIIRPSETAGRYVTYRYVV 208
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of Cmc01g0026291 vs. ExPASy Swiss-Prot
Match: Q80UW8 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.4e-55
Identity = 111/207 (53.62%), Postives = 149/207 (71.98%), Query Frame = 0


Query: 5   EEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGE-----NMKREDIVINKS 64
           EEE  RL++IRKT+ Q+  DRGY V   E+D T E+FK ++G+       +R D+ +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATS 124
             +D +DQ++VFFPEE KVGIK +K Y  RM+ EN+ RA++VVQQ +TP A+  + +   
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KSFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARY 184
           K + LE F + ELL+NI +H LVPEH ++T EE   LL RY ++E+QLPRIQ  DPVARY
Sbjct: 124 K-YVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARY 183

Query: 185 YGLKRGQVVKIIRPSETAGRYVTYRYV 207
           +G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Cmc01g0026291 vs. ExPASy Swiss-Prot
Match: B0BNE2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus OX=10116 GN=Polr2e PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.4e-55
Identity = 111/207 (53.62%), Postives = 149/207 (71.98%), Query Frame = 0


Query: 5   EEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGE-----NMKREDIVINKS 64
           EEE  RL++IRKT+ Q+  DRGY V   E+D T E+FK ++G+       +R D+ +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATS 124
             +D +DQ++VFFPEE KVGIK +K Y  RM+ EN+ RA++VVQQ +TP A+  + +   
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KSFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARY 184
           K + LE F + ELL+NI +H LVPEH ++T EE   LL RY ++E+QLPRIQ  DPVARY
Sbjct: 124 K-YVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARY 183

Query: 185 YGLKRGQVVKIIRPSETAGRYVTYRYV 207
           +G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Cmc01g0026291 vs. ExPASy Swiss-Prot
Match: Q5R587 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=9601 GN=POLR2E PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.5e-54
Identity = 110/207 (53.14%), Postives = 148/207 (71.50%), Query Frame = 0


Query: 5   EEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGE-----NMKREDIVINKS 64
           EEE  RL++IRKT+ Q+  DRGY V   E+D T E+F+ ++G+       +R D+ +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATS 124
             +D +DQ++VFFPEE KVGIK +K Y  RM+ EN+ RA++VVQQ +TP A+  + +   
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KSFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARY 184
           K + LE F + ELL+NI +H LVPEH ++T EE   LL RY ++E QLPRIQ  DPVARY
Sbjct: 124 K-YILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARY 183

Query: 185 YGLKRGQVVKIIRPSETAGRYVTYRYV 207
           +G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Cmc01g0026291 vs. ExPASy Swiss-Prot
Match: P19388 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens OX=9606 GN=POLR2E PE=1 SV=4)

HSP 1 Score: 212.6 bits (540), Expect = 4.2e-54
Identity = 111/207 (53.62%), Postives = 147/207 (71.01%), Query Frame = 0


Query: 5   EEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGE-----NMKREDIVINKS 64
           EEE  RL++IRKT+ Q+  DRGY V   E+D T E+FK + G+       +R D+ +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATS 124
             +D +DQ++VFFPEE KVGIK +K Y  RM+ EN+ RA++VVQQ +TP A+  + +   
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KSFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARY 184
           K + LE F + ELL+NI +H LVPEH ++T EE   LL RY ++E QLPRIQ  DPVARY
Sbjct: 124 K-YILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARY 183

Query: 185 YGLKRGQVVKIIRPSETAGRYVTYRYV 207
           +G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Cmc01g0026291 vs. ExPASy TrEMBL
Match: A0A5D3C9X8 (DNA-directed RNA polymerases II and IV subunit 5A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00310 PE=3 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.3e-108
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK
Sbjct: 15  MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 74

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK
Sbjct: 75  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 134

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
           SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 135 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 194

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 195 GLKRGQVVKIIRPSETAGRYVTYRYVV 221

[Close]

BLAST of Cmc01g0026291 vs. ExPASy TrEMBL
Match: A0A1S3BS23 (DNA-directed RNA polymerases II and IV subunit 5A OS=Cucumis melo OX=3656 GN=LOC103492579 PE=3 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.3e-108
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
           SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Cmc01g0026291 vs. ExPASy TrEMBL
Match: A0A0A0K8L9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374590 PE=3 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 8.9e-108
Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
           SFHLEVFQEAELLVNIKDHVLVPEHQLL NEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Cmc01g0026291 vs. ExPASy TrEMBL
Match: A0A6J1JRV4 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111488357 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.7e-98
Identity = 189/207 (91.30%), Postives = 199/207 (96.14%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTV QML+DRGYFVGDFEIDM+REQFK KYGE+MKREDIVINK+K
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEE KVG+K +KTYT RMK+ENVFRAILVVQQNLTPFAR C+SE +SK
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
            FHLEVFQEAELLVN+KDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 -FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cmc01g0026291 vs. ExPASy TrEMBL
Match: A0A6J1CPU1 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Momordica charantia OX=3673 GN=LOC111013465 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.7e-98
Identity = 190/207 (91.79%), Postives = 198/207 (95.65%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTV QML+DR YFVGDFEIDM+REQFK KYGENMKREDIVINK++
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEE KVG+K +KTYT RMKSENVFRAILVVQQNLTPFAR C+SE +SK
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
            FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 -FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cmc01g0026291 vs. TAIR 10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 328.9 bits (842), Expect = 2.8e-90
Identity = 163/206 (79.13%), Postives = 191/206 (92.72%), Query Frame = 0


Query: 2   VLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKR 61
           +L+EEE+ RL+RI+KT+ QMLRDRGYF+ D E+ MT++QF +K+G+NMKRED+V  K+KR
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSKS 121
           ND+SDQ+Y+FFP+EAKVG+K +K YT RMKSENVFRAILVVQQNLTPFAR C+SE +SK 
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK- 120

Query: 122 FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 181
           FHLEVFQEAE+LVNIK+HVLVPEHQ+LT EEKKTLLERYTVKETQLPRIQVTDP+ARY+G
Sbjct: 121 FHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFG 180

Query: 182 LKRGQVVKIIRPSETAGRYVTYRYVV 208
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of Cmc01g0026291 vs. TAIR 10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C )

HSP 1 Score: 178.3 bits (451), Expect = 6.2e-45
Identity = 97/207 (46.86%), Postives = 145/207 (70.05%), Query Frame = 0


Query: 5   EEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENM---KREDIVINKSKR 64
           ++EITR+F++R+TV QMLRDRGY + + ++++ RE+F Q++ + M    +E + ++ +K 
Sbjct: 5   DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64

Query: 65  NDSSDQIYVFFPEEAKVGIKPL-KTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 124
            + +D+IYVF+PE  KVG+  + K    +M+ + V R I+VV   +T  AR  +SE  +K
Sbjct: 65  PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSE-LNK 124

Query: 125 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 184
              +EVF+EAEL+ NI +H LV ++ +L ++ KK LL  YTV++TQLPRI VTDP+ARYY
Sbjct: 125 MLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYY 184

Query: 185 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKI R   T+  Y TYR+ V
Sbjct: 185 GLKRGQVVKIRRSDATSLDYYTYRFAV 210

[Close]

BLAST of Cmc01g0026291 vs. TAIR 10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D )

HSP 1 Score: 134.4 bits (337), Expect = 1.0e-31
Identity = 77/204 (37.75%), Postives = 125/204 (61.27%), Query Frame = 0


Query: 4   SEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRND 63
           S  E  + +  R+T  +MLRDRGY V D +I+++ +QF+  YGE+   + + I+   R D
Sbjct: 17  SSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFD 76

Query: 64  SSDQIYVFFPEEAKVGIKPLKTYTTRMKS-ENVFRAILVVQQNLTPFARACMSEATSKSF 123
           SS +I V F     V +  ++     + S EN+   ILV+Q ++T      +      SF
Sbjct: 77  SSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHIT---NQALKAVELFSF 136

Query: 124 HLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGL 183
            +E+F+  +LLVN+  HVL P+HQ+L ++EK++LL++++++E QLPR+   DP+ RYYGL
Sbjct: 137 KVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGL 196

Query: 184 KRGQVVKIIRPSETAGRYVTYRYV 207
           + GQV+K+    E +  +VTYR V
Sbjct: 197 ETGQVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of Cmc01g0026291 vs. TAIR 10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-30
Identity = 74/204 (36.27%), Postives = 118/204 (57.84%), Query Frame = 0


Query: 3   LSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRN 62
           LS EE  R +  R+   QMLRDRGY V D +I+++   F+  YGE    + + I+   R+
Sbjct: 20  LSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRS 79

Query: 63  DSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSKSF 122
           DS+ ++ + F   + V +  +++    + S+     +++V QN        +      SF
Sbjct: 80  DSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQN--HVTNQALKAIELFSF 139

Query: 123 HLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGL 182
            +E+FQ  +LLVNI  H L P+HQ+L +EEK TLL++++++E QLPRI   D + RYYGL
Sbjct: 140 KVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGL 199

Query: 183 KRGQVVKIIRPSETAGRYVTYRYV 207
           ++GQVVK+    E    +V +R V
Sbjct: 200 EKGQVVKVNYRGELTESHVAFRCV 221

[Close]

BLAST of Cmc01g0026291 vs. TAIR 10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E )

HSP 1 Score: 119.0 bits (297), Expect = 4.5e-27
Identity = 71/202 (35.15%), Postives = 113/202 (55.94%), Query Frame = 0


Query: 7   EITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRNDSSD 66
           E  R +  R T F+MLRDRGY V + E+ +T  +F+  +GE  + E + I    R+D   
Sbjct: 35  ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94

Query: 67  QIYVFFPEEAKVGIKPLKTYTTRMKSE-NVFRAILVVQQNLTPFARACMSEATSKSFHLE 126
           +I V F     + +K ++    ++ +   +   ILV+Q  +  FA+  +   T+  F +E
Sbjct: 95  KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKAL---TTFPFTVE 154

Query: 127 VFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRG 186
            F   +LLVNI  H+  P+ ++L  EEK+ LL ++ +++ QLP +Q  D   RYYGLK+ 
Sbjct: 155 TFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKK 214

Query: 187 QVVKIIRPSETAGRYVTYRYVV 208
           QVVKI    E  G +VTYR ++
Sbjct: 215 QVVKITYSKEPVGDFVTYRCII 233

The following BLAST results are available for this feature:

BLAST of Cmc01g0026291 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451219.1	4.8e-108	100.00	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo]	[more]
KAA0059617.1	4.8e-108	100.00	DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo var. makuwa] >TY...	[more]
XP_004148944.1	1.8e-107	99.52	DNA-directed RNA polymerases II and IV subunit 5A [Cucumis sativus] >XP_01165923...	[more]
XP_022143609.1	3.5e-98	91.79	DNA-directed RNA polymerases II and IV subunit 5A-like [Momordica charantia]	[more]
XP_022991826.1	3.5e-98	91.30	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_02...	[more]

BLAST of Cmc01g0026291 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81098	4.0e-89	79.13	DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=370...	[more]
Q80UW8	8.4e-55	53.62	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10...	[more]
B0BNE2	8.4e-55	53.62	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus ...	[more]
Q5R587	2.5e-54	53.14	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=96...	[more]
P19388	4.2e-54	53.62	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens OX=96...	[more]

BLAST of Cmc01g0026291 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9X8	2.3e-108	100.00	DNA-directed RNA polymerases II and IV subunit 5A OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3BS23	2.3e-108	100.00	DNA-directed RNA polymerases II and IV subunit 5A OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0K8L9	8.9e-108	99.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374590 PE=3 SV=1	[more]
A0A6J1JRV4	1.7e-98	91.30	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1CPU1	1.7e-98	91.79	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Momordica charantia OX...	[more]

BLAST of Cmc01g0026291 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22320.1	2.8e-90	79.13	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT5G57980.1	6.2e-45	46.86	RNA polymerase II fifth largest subunit, C	[more]
AT2G41340.1	1.0e-31	37.75	RNA polymerase II fifth largest subunit, D	[more]
AT3G57080.1	1.9e-30	36.27	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT3G54490.1	4.5e-27	35.15	RNA polymerase II fifth largest subunit, E	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 5..90 e-value: 9.3E-32 score: 109.5
IPR014381	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus	PIRSF	PIRSF000747	RPB5	coord: 1..207 e-value: 1.3E-88 score: 293.8
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 134..206 e-value: 8.1E-35 score: 118.5
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	GENE3D	3.40.1340.10		coord: 3..131 e-value: 7.0E-46 score: 157.7
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	SUPERFAMILY	53036	Eukaryotic RPB5 N-terminal domain	coord: 5..135
IPR035913	RPB5-like RNA polymerase subunit superfamily	GENE3D	3.90.940.20		coord: 132..207 e-value: 6.0E-35 score: 120.7
IPR035913	RPB5-like RNA polymerase subunit superfamily	SUPERFAMILY	55287	RPB5-like RNA polymerase subunit	coord: 132..207
None	No IPR available	PANTHER	PTHR10535:SF17	DNA-DIRECTED RNA POLYMERASES II AND IV SUBUNIT 5A-LIKE	coord: 1..207
IPR039531	DNA-directed RNA polymerase subunit Rpb5-like	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 1..207
IPR020608	RNA polymerase, subunit H/Rpb5, conserved site	PROSITE	PS01110	RNA_POL_H_23KD	coord: 139..152
IPR020609	Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit	HAMAP	MF_00025	RNApol_RpoH_RPB5	coord: 134..207 score: 22.839989

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0026291.1	Cmc01g0026291.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity