Cmc01g0026291 (gene) Melon (Charmono) v1.1

Overview
NameCmc01g0026291
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDNA-directed RNA polymerases II and IV subunit 5A
LocationCMiso1.1chr01: 27279063 .. 27282717 (-)
RNA-Seq ExpressionCmc01g0026291
SyntenyCmc01g0026291
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAACAATGTCTAATAAAATCAGACTAAGCCCTAATTTCTCGTTCCGCCATCTTCTTCTTCACGCCGGCTCCTAACAGCTCAGTGCTGCCGCCGTGTTCTACTGAGTGGGTTTCACTGATTTCTTGTTGTTACTGGTGATTCTCTCAATCCTCATCTATGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTCTATACTTCGAGAAACTCCATTTTGAACTTGTCTAATGAAAGAAAGGAGCAATGCCCATCGTCAAATAATGAACCAATCGGTGCTTTTGAACTTTTTTTTAGTTAATTACAATTTACCATTTACTTTCTACCAATTACTCAGGTGGTGGTAGTGGTATAGCTAGAAGTTTTATACTTCCATAATCCTCAAGGCCTTCATCTCCACAAATGAAAATTTCCTTTTTTAAAAAAAGAAAAAAATTATATGTAAGTTTCTGGACCAGCTTATATCTAGCTCAACCAATTTCACCCGGGAGAACTTTTGGTGTCAAGGAAACCTGTCTGATATTTAATCCCAAATAGGTGACCGTCGACACTGTGGAAGTTATGTTTTCTTTGGTGAAAATAGTTTATGTGTCAAAAATGTTGGTTAAGTGATTAAAAGAATACCTTTTTATTTTAGTAAAGGGCCTAGAGGTAGGCGAAGGCATGTTGGAGACTGCATAAACGAATGACCTCTGTTCCGTTGATTCCCAGCTAGTGTGTTTTGTGTAGAAAGGACTTGGAAGAAAGGCTGCACTTTTTTTTCCTATGACTGTTTGCTGCTTCATTTATTTATTTATCTTTGATAAGAAACAGATTTCATAGATGAATGAAATTTACGTTTGCTGCTTCATTTTGATTCAATCGCTCTTAAATATTTTACTTAATCTGGGTGTCTCCAAGATTTGTTCTTACTTCAGACAGATGCTTTCTATCAGCTGATTTATGGAACCCTCTAAGAATTTCGTGGTATAATTAGACGGTGGCTCTTCTGTAGAGAATTTTGTGCAAAAGAAATAGGACTTTTCTAGGAAATGGCTGTACTCTTGTTGTATACTGGGAAAAAGATGGTTGTCTACTTGGTGTTGGTTGGTAGTTACAATCTTTAGCTTTTCTAATTATGGTTTATCTCAATTTTTTTGTCAATTAGGAGTTCTTTTTGTATCCCCCCTTGGCTTGTAGGGTGGCTTGTAGGGGTTATCTCATTTCCCTTTTTATGTATCTCCCTCTTATTAATGAGATCGTTTTCTTGTTTACTTATTCCTATAGAAGTGTATTGCTAGAGTTCAAGCCATAATAGTCACCCACCCCGAGATTTAATGAGTGTTCTTGACAACCAAATCTAACAGGGTCAGGATGCTTACCTATTAGAATAGTCTAAGTGTGCACGACTTGACCTGAACACTCATGAACATAGAAAAAGAAGGATAAAGTTCAAATCAGGAAGGTCAACTAAGGATATTAAAATTTCTTTTACTTTTGTTTTATGCAAAATCACCATGGCCAAGCTGTTGACTTGTATGGCAGGTTGAAGTGTACATTCGTTGATCCAAACACCTATAGTTGTTTAAAACGATAACAATAGTAAAAGAAGGATATTTATATGTTATGTACACATGTTTGAAAACTGTTGTTGCAGCCTTGCAGGTCTGTGCTTTTCCAGCAGGATTTTATTTTTTTTCTTTAAATTGGTGTCTCCATATTCATAGTATATATTGCTGTTGTGTCCATCATGTTAGCGACTCCAACTTGTTTTGAATTTCTGAAAATGATTGTTTTATTATATCTGTGGTGTGTTCTGTATGTTGTGTCTTATATTGGTTTTGAGATTTCCTGTATGTAATATAGCTATTCAGATTGATGTTACATTAACTTACTCTTATTCATTTACAATGTGCATTATATATTCCTTGTGTACCTATTTAGTGAATGAGAATTGAATTGTTTGACAATGAATTAGCCTGGAACAAGATGGTGCTATCAGAAGAGGAAATCACCAGGCTTTTCAGAATTCGAAAAACCGTGTTTCAAATGCTAAGAGACCGAGGCTATTTTGTTGGAGACTTTGAGATTGACATGACAAGGGAGCAATTTAAGCAAAAATATGGTGAAAACATGAAAAGAGAAGACATTGTTATTAATAAATCCAAGAGAAATGATAGCAGTGATCAGGTATTGTCTCAGAAAGGGGAATATTTTAAATAGTATTTCTCATAGTTATTAAAGTTAAAGTTACAAGAACTACAAGTTTCTCAATGATTCTCTTATTTGTTTACATCCTCTTGTAGTGATATTGATTTTTCCTGTATAGATATATGTTTTTTTTCCAGAAGAGGCAAAGGTTGGCATCAAGCCGTTGAAAACATATACCACCCGAATGAAATCAGAGAATGTTTTTAGAGCAATATTGGTCGTTCAGCAGAATTTGACCCCTTTTGCCCGTGCCTGTATGAGTGAAGCAACTTCCAAATCATTCCACTTGGAAGTTTTCCAGGTGAAAATATTTTGTGGAGTATTTTTATGATTTAAGTTTGAGAAAAACCGAACCACAAGTTAGAGAAGTAAATTAGATTTTTTTCGTGCACCACTAATTTGAGGAGAATCAAAGGAAACCTTCTTACTCTGGAAACTGGAAATCATCTTATGCTTAGTTTGGTTATTCCTTGTTATGCAAAATGACTAAATGAGAATGAAAAATACGGGGGGTTTCTTGGATTCTCTGGTTGAAGAACAATTAAAGGGTTAAGGTAGGGCTTGGTTTCTATAATATTCTTGCTCTTTTCTTAGTTCACTTGAAATATTTAATTTTTATTCTTTTTCTTATCTTCATCTGTTGATGCAGGAAGCAGAATTGCTAGTTAATATCAAAGATCACGTCCTTGTTCCTGAGCACCAGTTACTTACCAATGAAGAGAAAAAGACACTACTTGAGAGATATACCGTGAAAGAAACACAGGTTGGCATTAATTCTTAAGAAAATATAACATTTATGTGAACTTATCTTAAGATCTATGTTGGATATTTCTTACGAAAATATAACATATATATACACATATATATGTTGTTCTGTAAAATGATGGTAGAGTCATGTGCGTTGACTTTCATGACCTCAACAAAGCCAGTCCCTAGGATGATTTTCCTTTGTCACACATTGGGATCTTGGTTAACAATGAAAGGGGCATGAATCATTAGATATCATCATATTATTACTTCACTAATCACAATGCAATCTAGAGGCATATGTCAGGCCAGTCTCCTCTTGTCTACGTTAGTGTCTATATGTGTTTGCATTTCTGTTGCAATATGAAAGAGATACTTAGATGATTTTGCATATTTGGTGTTAGCTACCACGCATACAAGTGACGGACCCAGTTGCACGATATTATGGGCTAAAGCGTGGCCAAGTTGTGAAGATCATCAGACCAAGTGAAACTGCAGGAAGATATGTAACTTACAGATATGTTGTCTGAGTATGTTTATGATTTTGTAATTGAACATTTGACATATGTATACACCTTGAAGTTATGTTTTGAAGTCTTAATTAGTGTTATACTGGTTGTGATATCTGAGGTGAGTTGAAGAACTTTGGAACTTAAGTATTTGGGATTTAGATGGGGGAACTTCATGGTATTAGTTGGAAGATCAATTATTT

mRNA sequence

CCAACAATGTCTAATAAAATCAGACTAAGCCCTAATTTCTCGTTCCGCCATCTTCTTCTTCACGCCGGCTCCTAACAGCTCAGTGCTGCCGCCGTGTTCTACTGAGTGGGTTTCACTGATTTCTTGTTGTTACTGCCTGGAACAAGATGGTGCTATCAGAAGAGGAAATCACCAGGCTTTTCAGAATTCGAAAAACCGTGTTTCAAATGCTAAGAGACCGAGGCTATTTTGTTGGAGACTTTGAGATTGACATGACAAGGGAGCAATTTAAGCAAAAATATGGTGAAAACATGAAAAGAGAAGACATTGTTATTAATAAATCCAAGAGAAATGATAGCAGTGATCAGATATATGTTTTTTTTCCAGAAGAGGCAAAGGTTGGCATCAAGCCGTTGAAAACATATACCACCCGAATGAAATCAGAGAATGTTTTTAGAGCAATATTGGTCGTTCAGCAGAATTTGACCCCTTTTGCCCGTGCCTGTATGAGTGAAGCAACTTCCAAATCATTCCACTTGGAAGTTTTCCAGGAAGCAGAATTGCTAGTTAATATCAAAGATCACGTCCTTGTTCCTGAGCACCAGTTACTTACCAATGAAGAGAAAAAGACACTACTTGAGAGATATACCGTGAAAGAAACACAGCTACCACGCATACAAGTGACGGACCCAGTTGCACGATATTATGGGCTAAAGCGTGGCCAAGTTGTGAAGATCATCAGACCAAGTGAAACTGCAGGAAGATATGTAACTTACAGATATGTTGTCTGAGTATGTTTATGATTTTGTAATTGAACATTTGACATATGTATACACCTTGAAGTTATGTTTTGAAGTCTTAATTAGTGTTATACTGGTTGTGATATCTGAGGTGAGTTGAAGAACTTTGGAACTTAAGTATTTGGGATTTAGATGGGGGAACTTCATGGTATTAGTTGGAAGATCAATTATTT

Coding sequence (CDS)

ATGGTGCTATCAGAAGAGGAAATCACCAGGCTTTTCAGAATTCGAAAAACCGTGTTTCAAATGCTAAGAGACCGAGGCTATTTTGTTGGAGACTTTGAGATTGACATGACAAGGGAGCAATTTAAGCAAAAATATGGTGAAAACATGAAAAGAGAAGACATTGTTATTAATAAATCCAAGAGAAATGATAGCAGTGATCAGATATATGTTTTTTTTCCAGAAGAGGCAAAGGTTGGCATCAAGCCGTTGAAAACATATACCACCCGAATGAAATCAGAGAATGTTTTTAGAGCAATATTGGTCGTTCAGCAGAATTTGACCCCTTTTGCCCGTGCCTGTATGAGTGAAGCAACTTCCAAATCATTCCACTTGGAAGTTTTCCAGGAAGCAGAATTGCTAGTTAATATCAAAGATCACGTCCTTGTTCCTGAGCACCAGTTACTTACCAATGAAGAGAAAAAGACACTACTTGAGAGATATACCGTGAAAGAAACACAGCTACCACGCATACAAGTGACGGACCCAGTTGCACGATATTATGGGCTAAAGCGTGGCCAAGTTGTGAAGATCATCAGACCAAGTGAAACTGCAGGAAGATATGTAACTTACAGATATGTTGTCTGA

Protein sequence

MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSKSFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Homology
BLAST of Cmc01g0026291 vs. NCBI nr
Match: XP_008451219.1 (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo])

HSP 1 Score: 401.4 bits (1030), Expect = 4.8e-108
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0

Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
           SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

BLAST of Cmc01g0026291 vs. NCBI nr
Match: KAA0059617.1 (DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo var. makuwa] >TYK08150.1 DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo var. makuwa])

HSP 1 Score: 401.4 bits (1030), Expect = 4.8e-108
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0

Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK
Sbjct: 15  MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 74

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK
Sbjct: 75  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 134

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
           SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 135 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 194

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 195 GLKRGQVVKIIRPSETAGRYVTYRYVV 221

BLAST of Cmc01g0026291 vs. NCBI nr
Match: XP_004148944.1 (DNA-directed RNA polymerases II and IV subunit 5A [Cucumis sativus] >XP_011659238.1 DNA-directed RNA polymerases II and IV subunit 5A [Cucumis sativus] >KGN44717.1 hypothetical protein Csa_016684 [Cucumis sativus])

HSP 1 Score: 399.4 bits (1025), Expect = 1.8e-107
Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0

Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
           SFHLEVFQEAELLVNIKDHVLVPEHQLL NEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

BLAST of Cmc01g0026291 vs. NCBI nr
Match: XP_022143609.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Momordica charantia])

HSP 1 Score: 368.6 bits (945), Expect = 3.5e-98
Identity = 190/207 (91.79%), Postives = 198/207 (95.65%), Query Frame = 0

Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTV QML+DR YFVGDFEIDM+REQFK KYGENMKREDIVINK++
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEE KVG+K +KTYT RMKSENVFRAILVVQQNLTPFAR C+SE +SK
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
            FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 -FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 206

BLAST of Cmc01g0026291 vs. NCBI nr
Match: XP_022991826.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023547519.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 368.6 bits (945), Expect = 3.5e-98
Identity = 189/207 (91.30%), Postives = 199/207 (96.14%), Query Frame = 0

Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTV QML+DRGYFVGDFEIDM+REQFK KYGE+MKREDIVINK+K
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEE KVG+K +KTYT RMK+ENVFRAILVVQQNLTPFAR C+SE +SK
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
            FHLEVFQEAELLVN+KDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 -FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 206

BLAST of Cmc01g0026291 vs. ExPASy Swiss-Prot
Match: O81098 (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 4.0e-89
Identity = 163/206 (79.13%), Postives = 191/206 (92.72%), Query Frame = 0

Query: 2   VLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKR 61
           +L+EEE+ RL+RI+KT+ QMLRDRGYF+ D E+ MT++QF +K+G+NMKRED+V  K+KR
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSKS 121
           ND+SDQ+Y+FFP+EAKVG+K +K YT RMKSENVFRAILVVQQNLTPFAR C+SE +SK 
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK- 120

Query: 122 FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 181
           FHLEVFQEAE+LVNIK+HVLVPEHQ+LT EEKKTLLERYTVKETQLPRIQVTDP+ARY+G
Sbjct: 121 FHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFG 180

Query: 182 LKRGQVVKIIRPSETAGRYVTYRYVV 208
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 205

BLAST of Cmc01g0026291 vs. ExPASy Swiss-Prot
Match: Q80UW8 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.4e-55
Identity = 111/207 (53.62%), Postives = 149/207 (71.98%), Query Frame = 0

Query: 5   EEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGE-----NMKREDIVINKS 64
           EEE  RL++IRKT+ Q+  DRGY V   E+D T E+FK ++G+       +R D+ +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATS 124
             +D +DQ++VFFPEE KVGIK +K Y  RM+ EN+ RA++VVQQ +TP A+  + +   
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KSFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARY 184
           K + LE F + ELL+NI +H LVPEH ++T EE   LL RY ++E+QLPRIQ  DPVARY
Sbjct: 124 K-YVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARY 183

Query: 185 YGLKRGQVVKIIRPSETAGRYVTYRYV 207
           +G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

BLAST of Cmc01g0026291 vs. ExPASy Swiss-Prot
Match: B0BNE2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus OX=10116 GN=Polr2e PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.4e-55
Identity = 111/207 (53.62%), Postives = 149/207 (71.98%), Query Frame = 0

Query: 5   EEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGE-----NMKREDIVINKS 64
           EEE  RL++IRKT+ Q+  DRGY V   E+D T E+FK ++G+       +R D+ +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATS 124
             +D +DQ++VFFPEE KVGIK +K Y  RM+ EN+ RA++VVQQ +TP A+  + +   
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KSFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARY 184
           K + LE F + ELL+NI +H LVPEH ++T EE   LL RY ++E+QLPRIQ  DPVARY
Sbjct: 124 K-YVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARY 183

Query: 185 YGLKRGQVVKIIRPSETAGRYVTYRYV 207
           +G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

BLAST of Cmc01g0026291 vs. ExPASy Swiss-Prot
Match: Q5R587 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=9601 GN=POLR2E PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.5e-54
Identity = 110/207 (53.14%), Postives = 148/207 (71.50%), Query Frame = 0

Query: 5   EEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGE-----NMKREDIVINKS 64
           EEE  RL++IRKT+ Q+  DRGY V   E+D T E+F+ ++G+       +R D+ +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATS 124
             +D +DQ++VFFPEE KVGIK +K Y  RM+ EN+ RA++VVQQ +TP A+  + +   
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KSFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARY 184
           K + LE F + ELL+NI +H LVPEH ++T EE   LL RY ++E QLPRIQ  DPVARY
Sbjct: 124 K-YILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARY 183

Query: 185 YGLKRGQVVKIIRPSETAGRYVTYRYV 207
           +G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

BLAST of Cmc01g0026291 vs. ExPASy Swiss-Prot
Match: P19388 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens OX=9606 GN=POLR2E PE=1 SV=4)

HSP 1 Score: 212.6 bits (540), Expect = 4.2e-54
Identity = 111/207 (53.62%), Postives = 147/207 (71.01%), Query Frame = 0

Query: 5   EEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGE-----NMKREDIVINKS 64
           EEE  RL++IRKT+ Q+  DRGY V   E+D T E+FK + G+       +R D+ +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATS 124
             +D +DQ++VFFPEE KVGIK +K Y  RM+ EN+ RA++VVQQ +TP A+  + +   
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KSFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARY 184
           K + LE F + ELL+NI +H LVPEH ++T EE   LL RY ++E QLPRIQ  DPVARY
Sbjct: 124 K-YILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARY 183

Query: 185 YGLKRGQVVKIIRPSETAGRYVTYRYV 207
           +G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

BLAST of Cmc01g0026291 vs. ExPASy TrEMBL
Match: A0A5D3C9X8 (DNA-directed RNA polymerases II and IV subunit 5A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00310 PE=3 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.3e-108
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0

Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK
Sbjct: 15  MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 74

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK
Sbjct: 75  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 134

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
           SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 135 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 194

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 195 GLKRGQVVKIIRPSETAGRYVTYRYVV 221

BLAST of Cmc01g0026291 vs. ExPASy TrEMBL
Match: A0A1S3BS23 (DNA-directed RNA polymerases II and IV subunit 5A OS=Cucumis melo OX=3656 GN=LOC103492579 PE=3 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.3e-108
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0

Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
           SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

BLAST of Cmc01g0026291 vs. ExPASy TrEMBL
Match: A0A0A0K8L9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374590 PE=3 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 8.9e-108
Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0

Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
           SFHLEVFQEAELLVNIKDHVLVPEHQLL NEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

BLAST of Cmc01g0026291 vs. ExPASy TrEMBL
Match: A0A6J1JRV4 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111488357 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.7e-98
Identity = 189/207 (91.30%), Postives = 199/207 (96.14%), Query Frame = 0

Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTV QML+DRGYFVGDFEIDM+REQFK KYGE+MKREDIVINK+K
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEE KVG+K +KTYT RMK+ENVFRAILVVQQNLTPFAR C+SE +SK
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
            FHLEVFQEAELLVN+KDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 -FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 206

BLAST of Cmc01g0026291 vs. ExPASy TrEMBL
Match: A0A6J1CPU1 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Momordica charantia OX=3673 GN=LOC111013465 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.7e-98
Identity = 190/207 (91.79%), Postives = 198/207 (95.65%), Query Frame = 0

Query: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
           MVLSEEEITRLFRIRKTV QML+DR YFVGDFEIDM+REQFK KYGENMKREDIVINK++
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60

Query: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
           RNDSSDQIYVFFPEE KVG+K +KTYT RMKSENVFRAILVVQQNLTPFAR C+SE +SK
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
            FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 -FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 206

BLAST of Cmc01g0026291 vs. TAIR 10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 328.9 bits (842), Expect = 2.8e-90
Identity = 163/206 (79.13%), Postives = 191/206 (92.72%), Query Frame = 0

Query: 2   VLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKR 61
           +L+EEE+ RL+RI+KT+ QMLRDRGYF+ D E+ MT++QF +K+G+NMKRED+V  K+KR
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSKS 121
           ND+SDQ+Y+FFP+EAKVG+K +K YT RMKSENVFRAILVVQQNLTPFAR C+SE +SK 
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK- 120

Query: 122 FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 181
           FHLEVFQEAE+LVNIK+HVLVPEHQ+LT EEKKTLLERYTVKETQLPRIQVTDP+ARY+G
Sbjct: 121 FHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFG 180

Query: 182 LKRGQVVKIIRPSETAGRYVTYRYVV 208
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 205

BLAST of Cmc01g0026291 vs. TAIR 10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C )

HSP 1 Score: 178.3 bits (451), Expect = 6.2e-45
Identity = 97/207 (46.86%), Postives = 145/207 (70.05%), Query Frame = 0

Query: 5   EEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENM---KREDIVINKSKR 64
           ++EITR+F++R+TV QMLRDRGY + + ++++ RE+F Q++ + M    +E + ++ +K 
Sbjct: 5   DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64

Query: 65  NDSSDQIYVFFPEEAKVGIKPL-KTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 124
            + +D+IYVF+PE  KVG+  + K    +M+ + V R I+VV   +T  AR  +SE  +K
Sbjct: 65  PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSE-LNK 124

Query: 125 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 184
              +EVF+EAEL+ NI +H LV ++ +L ++ KK LL  YTV++TQLPRI VTDP+ARYY
Sbjct: 125 MLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYY 184

Query: 185 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKI R   T+  Y TYR+ V
Sbjct: 185 GLKRGQVVKIRRSDATSLDYYTYRFAV 210

BLAST of Cmc01g0026291 vs. TAIR 10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D )

HSP 1 Score: 134.4 bits (337), Expect = 1.0e-31
Identity = 77/204 (37.75%), Postives = 125/204 (61.27%), Query Frame = 0

Query: 4   SEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRND 63
           S  E  + +  R+T  +MLRDRGY V D +I+++ +QF+  YGE+   + + I+   R D
Sbjct: 17  SSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFD 76

Query: 64  SSDQIYVFFPEEAKVGIKPLKTYTTRMKS-ENVFRAILVVQQNLTPFARACMSEATSKSF 123
           SS +I V F     V +  ++     + S EN+   ILV+Q ++T      +      SF
Sbjct: 77  SSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHIT---NQALKAVELFSF 136

Query: 124 HLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGL 183
            +E+F+  +LLVN+  HVL P+HQ+L ++EK++LL++++++E QLPR+   DP+ RYYGL
Sbjct: 137 KVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGL 196

Query: 184 KRGQVVKIIRPSETAGRYVTYRYV 207
           + GQV+K+    E +  +VTYR V
Sbjct: 197 ETGQVMKVTYKDELSESHVTYRCV 217

BLAST of Cmc01g0026291 vs. TAIR 10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-30
Identity = 74/204 (36.27%), Postives = 118/204 (57.84%), Query Frame = 0

Query: 3   LSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRN 62
           LS EE  R +  R+   QMLRDRGY V D +I+++   F+  YGE    + + I+   R+
Sbjct: 20  LSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRS 79

Query: 63  DSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSKSF 122
           DS+ ++ + F   + V +  +++    + S+     +++V QN        +      SF
Sbjct: 80  DSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQN--HVTNQALKAIELFSF 139

Query: 123 HLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGL 182
            +E+FQ  +LLVNI  H L P+HQ+L +EEK TLL++++++E QLPRI   D + RYYGL
Sbjct: 140 KVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGL 199

Query: 183 KRGQVVKIIRPSETAGRYVTYRYV 207
           ++GQVVK+    E    +V +R V
Sbjct: 200 EKGQVVKVNYRGELTESHVAFRCV 221

BLAST of Cmc01g0026291 vs. TAIR 10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E )

HSP 1 Score: 119.0 bits (297), Expect = 4.5e-27
Identity = 71/202 (35.15%), Postives = 113/202 (55.94%), Query Frame = 0

Query: 7   EITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRNDSSD 66
           E  R +  R T F+MLRDRGY V + E+ +T  +F+  +GE  + E + I    R+D   
Sbjct: 35  ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94

Query: 67  QIYVFFPEEAKVGIKPLKTYTTRMKSE-NVFRAILVVQQNLTPFARACMSEATSKSFHLE 126
           +I V F     + +K ++    ++ +   +   ILV+Q  +  FA+  +   T+  F +E
Sbjct: 95  KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKAL---TTFPFTVE 154

Query: 127 VFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRG 186
            F   +LLVNI  H+  P+ ++L  EEK+ LL ++ +++ QLP +Q  D   RYYGLK+ 
Sbjct: 155 TFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKK 214

Query: 187 QVVKIIRPSETAGRYVTYRYVV 208
           QVVKI    E  G +VTYR ++
Sbjct: 215 QVVKITYSKEPVGDFVTYRCII 233

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008451219.14.8e-108100.00PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo][more]
KAA0059617.14.8e-108100.00DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo var. makuwa] >TY... [more]
XP_004148944.11.8e-10799.52DNA-directed RNA polymerases II and IV subunit 5A [Cucumis sativus] >XP_01165923... [more]
XP_022143609.13.5e-9891.79DNA-directed RNA polymerases II and IV subunit 5A-like [Momordica charantia][more]
XP_022991826.13.5e-9891.30DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_02... [more]
Match NameE-valueIdentityDescription
O810984.0e-8979.13DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=370... [more]
Q80UW88.4e-5553.62DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10... [more]
B0BNE28.4e-5553.62DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus ... [more]
Q5R5872.5e-5453.14DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=96... [more]
P193884.2e-5453.62DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens OX=96... [more]
Match NameE-valueIdentityDescription
A0A5D3C9X82.3e-108100.00DNA-directed RNA polymerases II and IV subunit 5A OS=Cucumis melo var. makuwa OX... [more]
A0A1S3BS232.3e-108100.00DNA-directed RNA polymerases II and IV subunit 5A OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A0A0K8L98.9e-10899.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374590 PE=3 SV=1[more]
A0A6J1JRV41.7e-9891.30DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=36... [more]
A0A6J1CPU11.7e-9891.79DNA-directed RNA polymerases II and IV subunit 5A-like OS=Momordica charantia OX... [more]
Match NameE-valueIdentityDescription
AT3G22320.12.8e-9079.13Eukaryotic rpb5 RNA polymerase subunit family protein [more]
AT5G57980.16.2e-4546.86RNA polymerase II fifth largest subunit, C [more]
AT2G41340.11.0e-3137.75RNA polymerase II fifth largest subunit, D [more]
AT3G57080.11.9e-3036.27Eukaryotic rpb5 RNA polymerase subunit family protein [more]
AT3G54490.14.5e-2735.15RNA polymerase II fifth largest subunit, E [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005571RNA polymerase, Rpb5, N-terminalPFAMPF03871RNA_pol_Rpb5_Ncoord: 5..90
e-value: 9.3E-32
score: 109.5
IPR014381DNA-directed RNA polymerase RPB5 subunit, eukaryote/virusPIRSFPIRSF000747RPB5coord: 1..207
e-value: 1.3E-88
score: 293.8
IPR000783RNA polymerase, subunit H/Rpb5 C-terminalPFAMPF01191RNA_pol_Rpb5_Ccoord: 134..206
e-value: 8.1E-35
score: 118.5
IPR036710RNA polymerase Rpb5, N-terminal domain superfamilyGENE3D3.40.1340.10coord: 3..131
e-value: 7.0E-46
score: 157.7
IPR036710RNA polymerase Rpb5, N-terminal domain superfamilySUPERFAMILY53036Eukaryotic RPB5 N-terminal domaincoord: 5..135
IPR035913RPB5-like RNA polymerase subunit superfamilyGENE3D3.90.940.20coord: 132..207
e-value: 6.0E-35
score: 120.7
IPR035913RPB5-like RNA polymerase subunit superfamilySUPERFAMILY55287RPB5-like RNA polymerase subunitcoord: 132..207
NoneNo IPR availablePANTHERPTHR10535:SF17DNA-DIRECTED RNA POLYMERASES II AND IV SUBUNIT 5A-LIKEcoord: 1..207
IPR039531DNA-directed RNA polymerase subunit Rpb5-likePANTHERPTHR10535DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1coord: 1..207
IPR020608RNA polymerase, subunit H/Rpb5, conserved sitePROSITEPS01110RNA_POL_H_23KDcoord: 139..152
IPR020609Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunitHAMAPMF_00025RNApol_RpoH_RPB5coord: 134..207
score: 22.839989

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc01g0026291.1Cmc01g0026291.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005736 RNA polymerase I complex
cellular_component GO:0005665 RNA polymerase II, core complex
cellular_component GO:0005666 RNA polymerase III complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity