Cmc01g0024501 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0024501
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr01: 24982124 .. 24982660 (-)
RNA-Seq Expression	Cmc01g0024501
Synteny	Cmc01g0024501

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACTTGAGATTTGAGCATTTGAACTTTGATGGCTTAAGATTATTAGCCAGGAAGAACATGGTGAAAGGGTTGCCATATGTCAAACATCCAGATCGACTTTGTGAAGGTTGTCTTCATGGAAAACAATCAGGGAAGATTTTTCCACAAGAATCATCTTCGAGAGCAAGGAGACCACTGGAGTTAGTTCACACGGATCTTTGTGGACCGATCAAACCATGTTCTTTTGGTAAGAATAATTATTTCTTATTATTTATTGATGATTTCAGCCGAAAAACTTGGGTTTACTTTGTCAAGAAGAAATTAGAAGTATTTGACATGTTCAATAGATTTAAAGCTCTTGTTGAAAAAGAAAGTGGTTATTACCTTAAATCTTTGAAATCAGACAGGGGAGGTGAATTCACTTCAAATGAATTCAAAACTTTTTGCGCAGAAAATGGAATCCATCGACCTATGACAGTTACATTTACTCCTAAAAAAATGGTGTTGTTGAAAGGAAGAACCGAACAATACTTAACATGGCTCGAATCATGTTAA

mRNA sequence

ATGCACTTGAGATTTGAGCATTTGAACTTTGATGGCTTAAGATTATTAGCCAGGAAGAACATGGTGAAAGGGTTGCCATATGTCAAACATCCAGATCGACTTTGTGAAGGTTGTCTTCATGGAAAACAATCAGGGAAGATTTTTCCACAAGAATCATCTTCGAGAGCAAGGAGACCACTGGAGTTAGTTCACACGGATCTTTGTGGACCGATCAAACCATGTTCTTTTGGTAAGAATAATTATTTCTTATTATTTATTGATGATTTCAGCCGAAAAACTTGGGTTTACTTTGTCAAGAAGAAATTAGAAGTATTTGACATGTTCAATAGATTTAAAGCTCTTGTTGAAAAAGAAAGTGGTTATTACCTTAAATCTTTGAAATCAGACAGGGGAGGTGAATTCACTTCAAATGAATTCAAAACTTTTTGCGCAGAAAATGGAATCCATCGACCTATGACAGTTACATTTACTCCTAAAAAAATGGTGTTGTTGAAAGGAAGAACCGAACAATACTTAACATGGCTCGAATCATGTTAA

Coding sequence (CDS)

ATGCACTTGAGATTTGAGCATTTGAACTTTGATGGCTTAAGATTATTAGCCAGGAAGAACATGGTGAAAGGGTTGCCATATGTCAAACATCCAGATCGACTTTGTGAAGGTTGTCTTCATGGAAAACAATCAGGGAAGATTTTTCCACAAGAATCATCTTCGAGAGCAAGGAGACCACTGGAGTTAGTTCACACGGATCTTTGTGGACCGATCAAACCATGTTCTTTTGGTAAGAATAATTATTTCTTATTATTTATTGATGATTTCAGCCGAAAAACTTGGGTTTACTTTGTCAAGAAGAAATTAGAAGTATTTGACATGTTCAATAGATTTAAAGCTCTTGTTGAAAAAGAAAGTGGTTATTACCTTAAATCTTTGAAATCAGACAGGGGAGGTGAATTCACTTCAAATGAATTCAAAACTTTTTGCGCAGAAAATGGAATCCATCGACCTATGACAGTTACATTTACTCCTAAAAAAATGGTGTTGTTGAAAGGAAGAACCGAACAATACTTAACATGGCTCGAATCATGTTAA

Protein sequence

MHLRFEHLNFDGLRLLARKNMVKGLPYVKHPDRLCEGCLHGKQSGKIFPQESSSRARRPLELVHTDLCGPIKPCSFGKNNYFLLFIDDFSRKTWVYFVKKKLEVFDMFNRFKALVEKESGYYLKSLKSDRGGEFTSNEFKTFCAENGIHRPMTVTFTPKKMVLLKGRTEQYLTWLESC

Homology

[Close]

BLAST of Cmc01g0024501 vs. NCBI nr
Match: TYK18362.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 294.3 bits (752), Expect = 7.2e-76
Identity = 143/169 (84.62%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 2   HLRFEHLNFDGLRLLARKNMVKGLPYVKHPDRLCEGCLHGKQSGKIFPQESSSRARRPLE 61
           HLRF HLNFDGLRLLARKNMVKGLPYVK PD+LCEGCLHGKQS K FPQESS RARRPLE
Sbjct: 456 HLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRARRPLE 515

Query: 62  LVHTDLCGPIKPCSFGKNNYFLLFIDDFSRKTWVYFVKKKLEVFDMFNRFKALVEKESGY 121
           LVHTDLCGPIKP SFGKNNYFLLFIDDFSRKTWVYFVK+K EVF MF RFKALVEKESGY
Sbjct: 516 LVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEKESGY 575

Query: 122 YLKSLKSDRGGEFTSNEFKTFCAENGIHRPMTVTFTPKK--MVLLKGRT 169
           Y+K+L+SDRGGEFTSNEFKTFC ENGI R MTV FTP++  +V  K RT
Sbjct: 576 YIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRT 624

[Close]

BLAST of Cmc01g0024501 vs. NCBI nr
Match: KAA0047979.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 294.3 bits (752), Expect = 7.2e-76
Identity = 143/169 (84.62%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 2   HLRFEHLNFDGLRLLARKNMVKGLPYVKHPDRLCEGCLHGKQSGKIFPQESSSRARRPLE 61
           HLRF HLNFDGLRLLARKNMVKGLPYVK PD+LCEGCLHGKQS K FPQESS RARRPLE
Sbjct: 456 HLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRARRPLE 515

Query: 62  LVHTDLCGPIKPCSFGKNNYFLLFIDDFSRKTWVYFVKKKLEVFDMFNRFKALVEKESGY 121
           LVHTDLCGPIKP SFGKNNYFLLFIDDFSRKTWVYFVK+K EVF MF RFKALVEKESGY
Sbjct: 516 LVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEKESGY 575

Query: 122 YLKSLKSDRGGEFTSNEFKTFCAENGIHRPMTVTFTPKK--MVLLKGRT 169
           Y+K+L+SDRGGEFTSNEFKTFC ENGI R MTV FTP++  +V  K RT
Sbjct: 576 YIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRT 624

[Close]

BLAST of Cmc01g0024501 vs. NCBI nr
Match: TYJ96309.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 294.3 bits (752), Expect = 7.2e-76
Identity = 143/169 (84.62%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 2   HLRFEHLNFDGLRLLARKNMVKGLPYVKHPDRLCEGCLHGKQSGKIFPQESSSRARRPLE 61
           HLRF HLNFDGLRLLARKNMVKGLPYVK PD+LCEGCLHGKQS K FPQESS RARRPLE
Sbjct: 456 HLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRARRPLE 515

Query: 62  LVHTDLCGPIKPCSFGKNNYFLLFIDDFSRKTWVYFVKKKLEVFDMFNRFKALVEKESGY 121
           LVHTDLCGPIKP SFGKNNYFLLFIDDFSRKTWVYFVK+K EVF MF RFKALVEKESGY
Sbjct: 516 LVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEKESGY 575

Query: 122 YLKSLKSDRGGEFTSNEFKTFCAENGIHRPMTVTFTPKK--MVLLKGRT 169
           Y+K+L+SDRGGEFTSNEFKTFC ENGI R MTV FTP++  +V  K RT
Sbjct: 576 YIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRT 624

[Close]

BLAST of Cmc01g0024501 vs. NCBI nr
Match: TYK06895.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 294.3 bits (752), Expect = 7.2e-76
Identity = 143/169 (84.62%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 2   HLRFEHLNFDGLRLLARKNMVKGLPYVKHPDRLCEGCLHGKQSGKIFPQESSSRARRPLE 61
           HLRF HLNFDGLRLLARKNMVKGLPYVK PD+LCEGCLHGKQS K FPQESS RARRPLE
Sbjct: 456 HLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRARRPLE 515

Query: 62  LVHTDLCGPIKPCSFGKNNYFLLFIDDFSRKTWVYFVKKKLEVFDMFNRFKALVEKESGY 121
           LVHTDLCGPIKP SFGKNNYFLLFIDDFSRKTWVYFVK+K EVF MF RFKALVEKESGY
Sbjct: 516 LVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEKESGY 575

Query: 122 YLKSLKSDRGGEFTSNEFKTFCAENGIHRPMTVTFTPKK--MVLLKGRT 169
           Y+K+L+SDRGGEFTSNEFKTFC ENGI R MTV FTP++  +V  K RT
Sbjct: 576 YIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRT 624

[Close]

BLAST of Cmc01g0024501 vs. NCBI nr
Match: TYK08113.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 294.3 bits (752), Expect = 7.2e-76
Identity = 143/169 (84.62%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 2   HLRFEHLNFDGLRLLARKNMVKGLPYVKHPDRLCEGCLHGKQSGKIFPQESSSRARRPLE 61
           HLRF HLNFDGLRLLARKNMVKGLPYVK PD+LCEGCLHGKQS K FPQESS RARRPLE
Sbjct: 456 HLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRARRPLE 515

Query: 62  LVHTDLCGPIKPCSFGKNNYFLLFIDDFSRKTWVYFVKKKLEVFDMFNRFKALVEKESGY 121
           LVHTDLCGPIKP SFGKNNYFLLFIDDFSRKTWVYFVK+K EVF MF RFKALVEKESGY
Sbjct: 516 LVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEKESGY 575

Query: 122 YLKSLKSDRGGEFTSNEFKTFCAENGIHRPMTVTFTPKK--MVLLKGRT 169
           Y+K+L+SDRGGEFTSNEFKTFC ENGI R MTV FTP++  +V  K RT
Sbjct: 576 YIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRT 624

[Close]

BLAST of Cmc01g0024501 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 7.8e-33
Identity = 74/159 (46.54%), Postives = 104/159 (65.41%), Query Frame = 0


Query: 2   HLRFEHLNFDGLRLLARKNMVKGLPYVKHPD-RLCEGCLHGKQSGKIFPQESSSRARRPL 61
           H R  H++  GL++LA+K+++    Y K    + C+ CL GKQ    F Q SS R    L
Sbjct: 426 HKRMGHMSEKGLQILAKKSLIS---YAKGTTVKPCDYCLFGKQHRVSF-QTSSERKLNIL 485

Query: 62  ELVHTDLCGPIKPCSFGKNNYFLLFIDDFSRKTWVYFVKKKLEVFDMFNRFKALVEKESG 121
           +LV++D+CGP++  S G N YF+ FIDD SRK WVY +K K +VF +F +F ALVE+E+G
Sbjct: 486 DLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETG 545

Query: 122 YYLKSLKSDRGGEFTSNEFKTFCAENGIHRPMTVTFTPK 160
             LK L+SD GGE+TS EF+ +C+ +GI    TV  TP+
Sbjct: 546 RKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQ 580

[Close]

BLAST of Cmc01g0024501 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 112.8 bits (281), Expect = 3.9e-24
Identity = 60/162 (37.04%), Postives = 88/162 (54.32%), Query Frame = 0


Query: 2   HLRFEHLNFDGLRLLARKNMVKGLPYVKHPD---RLCEGCLHGKQSGKIFPQ-ESSSRAR 61
           H RF H++   L  + RKNM      + + +    +CE CL+GKQ+   F Q +  +  +
Sbjct: 419 HERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTHIK 478

Query: 62  RPLELVHTDLCGPIKPCSFGKNNYFLLFIDDFSRKTWVYFVKKKLEVFDMFNRFKALVEK 121
           RPL +VH+D+CGPI P +    NYF++F+D F+     Y +K K +VF MF  F A  E 
Sbjct: 479 RPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEA 538

Query: 122 ESGYYLKSLKSDRGGEFTSNEFKTFCAENGIHRPMTVTFTPK 160
                +  L  D G E+ SNE + FC + GI   +TV  TP+
Sbjct: 539 HFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQ 580

[Close]

BLAST of Cmc01g0024501 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-10
Identity = 42/126 (33.33%), Postives = 69/126 (54.76%), Query Frame = 0


Query: 35  CEGCLHGKQSGKIFPQESSSRARRPLELVHTDL-CGPIKPCSFGKNNYFLLFIDDFSRKT 94
           C  C   K S K+    S+  + +PLE +++D+   PI   S     Y+++F+D F+R T
Sbjct: 479 CSDCFINK-SHKVPFSNSTITSSKPLEYIYSDVWSSPI--LSIDNYRYYVIFVDHFTRYT 538

Query: 95  WVYFVKKKLEVFDMFNRFKALVEKESGYYLKSLKSDRGGEFTSNEFKTFCAENGIHRPMT 154
           W+Y +K+K +V D F  FK+LVE      + +L SD GGEF     + + +++GI    +
Sbjct: 539 WLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFV--VLRDYLSQHGISHFTS 598

Query: 155 VTFTPK 160
              TP+
Sbjct: 599 PPHTPE 599

[Close]

BLAST of Cmc01g0024501 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.2e-10
Identity = 41/126 (32.54%), Postives = 69/126 (54.76%), Query Frame = 0


Query: 35  CEGCLHGKQSGKIFPQESSSRARRPLELVHTDL-CGPIKPCSFGKNNYFLLFIDDFSRKT 94
           C  CL  K S K+   +S+  + RPLE +++D+   PI   S     Y+++F+D F+R T
Sbjct: 500 CSDCLINK-SNKVPFSQSTINSTRPLEYIYSDVWSSPI--LSHDNYRYYVIFVDHFTRYT 559

Query: 95  WVYFVKKKLEVFDMFNRFKALVEKESGYYLKSLKSDRGGEFTSNEFKTFCAENGIHRPMT 154
           W+Y +K+K +V + F  FK L+E      + +  SD GGEF +     + +++GI    +
Sbjct: 560 WLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVA--LWEYFSQHGISHLTS 619

Query: 155 VTFTPK 160
              TP+
Sbjct: 620 PPHTPE 620

[Close]

BLAST of Cmc01g0024501 vs. ExPASy Swiss-Prot
Match: P0C2J7 (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY4B-H PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.3e-05
Identity = 40/178 (22.47%), Postives = 72/178 (40.45%), Query Frame = 0


Query: 2   HLRFEHLNFDGLRLLARKN-MVKGLPYVKHPDRL-CEGCLHGKQSGK---IFPQESSSRA 61
           H R  H     +    + N   + L  +K P+   C+ C   K + +        + S  
Sbjct: 561 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 620

Query: 62  RRPLELVHTDLCGPIKPCSFGKNNYFLLFIDDFSR--KTWVYFVKKKLEVFDMFNRFKAL 121
             P      D+ GP+   +     Y L+ +D+ +R   T  +F K    +     +    
Sbjct: 621 HEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQIRKNIQY 680

Query: 122 VEKESGYYLKSLKSDRGGEFTSNEFKTFCAENGIHRPMTVTFTPKKMVLLKGRTEQYL 173
           VE +    ++ + SDRG EFT+++ + +    GIH  +T T    +     GR E+Y+
Sbjct: 681 VETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTST----QDHAANGRAERYI 734

[Close]

BLAST of Cmc01g0024501 vs. ExPASy TrEMBL
Match: A0A5A7V3X9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003030 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.5e-76
Identity = 143/169 (84.62%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 2   HLRFEHLNFDGLRLLARKNMVKGLPYVKHPDRLCEGCLHGKQSGKIFPQESSSRARRPLE 61
           HLRF HLNFDGLRLLARKNMVKGLPYVK PD+LCEGCLHGKQS K FPQESS RARRPLE
Sbjct: 456 HLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRARRPLE 515

Query: 62  LVHTDLCGPIKPCSFGKNNYFLLFIDDFSRKTWVYFVKKKLEVFDMFNRFKALVEKESGY 121
           LVHTDLCGPIKP SFGKNNYFLLFIDDFSRKTWVYFVK+K EVF MF RFKALVEKESGY
Sbjct: 516 LVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEKESGY 575

Query: 122 YLKSLKSDRGGEFTSNEFKTFCAENGIHRPMTVTFTPKK--MVLLKGRT 169
           Y+K+L+SDRGGEFTSNEFKTFC ENGI R MTV FTP++  +V  K RT
Sbjct: 576 YIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRT 624

[Close]

BLAST of Cmc01g0024501 vs. ExPASy TrEMBL
Match: A0A5A7SH73 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G00300 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.5e-76
Identity = 143/169 (84.62%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 2   HLRFEHLNFDGLRLLARKNMVKGLPYVKHPDRLCEGCLHGKQSGKIFPQESSSRARRPLE 61
           HLRF HLNFDGLRLLARKNMVKGLPYVK PD+LCEGCLHGKQS K FPQESS RARRPLE
Sbjct: 456 HLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRARRPLE 515

Query: 62  LVHTDLCGPIKPCSFGKNNYFLLFIDDFSRKTWVYFVKKKLEVFDMFNRFKALVEKESGY 121
           LVHTDLCGPIKP SFGKNNYFLLFIDDFSRKTWVYFVK+K EVF MF RFKALVEKESGY
Sbjct: 516 LVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEKESGY 575

Query: 122 YLKSLKSDRGGEFTSNEFKTFCAENGIHRPMTVTFTPKK--MVLLKGRT 169
           Y+K+L+SDRGGEFTSNEFKTFC ENGI R MTV FTP++  +V  K RT
Sbjct: 576 YIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRT 624

[Close]

BLAST of Cmc01g0024501 vs. ExPASy TrEMBL
Match: A0A5A7SJX6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G002010 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.5e-76
Identity = 143/169 (84.62%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 2   HLRFEHLNFDGLRLLARKNMVKGLPYVKHPDRLCEGCLHGKQSGKIFPQESSSRARRPLE 61
           HLRF HLNFDGLRLLARKNMVKGLPYVK PD+LCEGCLHGKQS K FPQESS RARRPLE
Sbjct: 456 HLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRARRPLE 515

Query: 62  LVHTDLCGPIKPCSFGKNNYFLLFIDDFSRKTWVYFVKKKLEVFDMFNRFKALVEKESGY 121
           LVHTDLCGPIKP SFGKNNYFLLFIDDFSRKTWVYFVK+K EVF MF RFKALVEKESGY
Sbjct: 516 LVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEKESGY 575

Query: 122 YLKSLKSDRGGEFTSNEFKTFCAENGIHRPMTVTFTPKK--MVLLKGRT 169
           Y+K+L+SDRGGEFTSNEFKTFC ENGI R MTV FTP++  +V  K RT
Sbjct: 576 YIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRT 624

[Close]

BLAST of Cmc01g0024501 vs. ExPASy TrEMBL
Match: A0A5A7V308 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00290 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.5e-76
Identity = 143/169 (84.62%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 2   HLRFEHLNFDGLRLLARKNMVKGLPYVKHPDRLCEGCLHGKQSGKIFPQESSSRARRPLE 61
           HLRF HLNFDGLRLLARKNMVKGLPYVK PD+LCEGCLHGKQS K FPQESS RARRPLE
Sbjct: 456 HLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRARRPLE 515

Query: 62  LVHTDLCGPIKPCSFGKNNYFLLFIDDFSRKTWVYFVKKKLEVFDMFNRFKALVEKESGY 121
           LVHTDLCGPIKP SFGKNNYFLLFIDDFSRKTWVYFVK+K EVF MF RFKALVEKESGY
Sbjct: 516 LVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEKESGY 575

Query: 122 YLKSLKSDRGGEFTSNEFKTFCAENGIHRPMTVTFTPKK--MVLLKGRT 169
           Y+K+L+SDRGGEFTSNEFKTFC ENGI R MTV FTP++  +V  K RT
Sbjct: 576 YIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRT 624

[Close]

BLAST of Cmc01g0024501 vs. ExPASy TrEMBL
Match: A0A5A7UNW6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G00840 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.5e-76
Identity = 143/169 (84.62%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 2   HLRFEHLNFDGLRLLARKNMVKGLPYVKHPDRLCEGCLHGKQSGKIFPQESSSRARRPLE 61
           HLRF HLNFDGLRLLARKNMVKGLPYVK PD+LCEGCLHGKQS K FPQESS RARRPLE
Sbjct: 356 HLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRARRPLE 415

Query: 62  LVHTDLCGPIKPCSFGKNNYFLLFIDDFSRKTWVYFVKKKLEVFDMFNRFKALVEKESGY 121
           LVHTDLCGPIKP SFGKNNYFLLFIDDFSRKTWVYFVK+K EVF MF RFKALVEKESGY
Sbjct: 416 LVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEKESGY 475

Query: 122 YLKSLKSDRGGEFTSNEFKTFCAENGIHRPMTVTFTPKK--MVLLKGRT 169
           Y+K+L+SDRGGEFTSNEFKTFC ENGI R MTV FTP++  +V  K RT
Sbjct: 476 YIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRT 524

The following BLAST results are available for this feature:

BLAST of Cmc01g0024501 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK18362.1	7.2e-76	84.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0047979.1	7.2e-76	84.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYJ96309.1	7.2e-76	84.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK06895.1	7.2e-76	84.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK08113.1	7.2e-76	84.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc01g0024501 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.8e-33	46.54	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.9e-24	37.04	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.9e-10	33.33	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	4.2e-10	32.54	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P0C2J7	5.3e-05	22.47	Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc01g0024501 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V3X9	3.5e-76	84.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SH73	3.5e-76	84.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SJX6	3.5e-76	84.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V308	3.5e-76	84.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UNW6	3.5e-76	84.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc01g0024501 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 2..43 e-value: 1.5E-7 score: 31.1
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 57..153 e-value: 6.7E-13 score: 48.8
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 55..178 score: 15.228218
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 50..170 e-value: 6.2E-23 score: 83.1
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 55..162
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 55..162
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 55..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0024501.1	Cmc01g0024501.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding