Cmc01g0023491 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0023491
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Beta-galactosidase
Location	CMiso1.1chr01: 23320895 .. 23321593 (+)
RNA-Seq Expression	Cmc01g0023491
Synteny	Cmc01g0023491

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGAGAATGACAGGTATGATGCTGCTGTTCTTGAAAATATGGAAGAAAAGAACCATGGTGATGAGACTGAGGTTAAAATAGAAACCAGTAACGATGAAGCTGAACAGGGCCATACAAGGAAACATGATGACTATGATCCTTCTCTTTATCTTCCTATTGCACTGAGAAAAGGTACTTGGTCTTGTACAAAGCACTCTATATCTAATTATGTGTCATACGAGAATCTATCACCACAGTTCAGAGCTTTTATTGTCAGCCTTGACTCTATCACAATACCGAAAAATATTTATATTGCTTTAGAGTGCCCTGAATGGAAGAATGTTGTAATAGAAGAGATGAAAGCTCTAGAAAAGAATAACACTTGGGAGATATGTGCCCTACCCAAGGGACACAAGCCCGTGGGATGCAAATGGGTGTTCACTATCAAATACAAAGCAGATGGAACTCTTGACAAACACAAGGCAAGGTTAGTTGCAAAAGGATTTACTCAGACCTATGGTGTTGATTATTCAGAAACTTTTTCTCCTGTTGCTAAGTTGAATACTGTCAGAGTCCTTCTTTCTATTGCTGCAAACAAAGATTTGCCTCTATATCAGCTGGATGTAAAATGCTTTTCTGAATGGAGATCTAGTAAAGGAGGTCTACATAAGCCCTCTGCCTGGTTTAGAAGCCTAGTTTGGTCAATAGGTTTGTAA

mRNA sequence

ATGAGTGAGAATGACAGGTATGATGCTGCTGTTCTTGAAAATATGGAAGAAAAGAACCATGGTGATGAGACTGAGGTTAAAATAGAAACCAGTAACGATGAAGCTGAACAGGGCCATACAAGGAAACATGATGACTATGATCCTTCTCTTTATCTTCCTATTGCACTGAGAAAAGGTACTTGGTCTTGTACAAAGCACTCTATATCTAATTATGTGTCATACGAGAATCTATCACCACAGTTCAGAGCTTTTATTGTCAGCCTTGACTCTATCACAATACCGAAAAATATTTATATTGCTTTAGAGTGCCCTGAATGGAAGAATGTTGTAATAGAAGAGATGAAAGCTCTAGAAAAGAATAACACTTGGGAGATATGTGCCCTACCCAAGGGACACAAGCCCGTGGGATGCAAATGGGTGTTCACTATCAAATACAAAGCAGATGGAACTCTTGACAAACACAAGGCAAGGTTAGTTGCAAAAGGATTTACTCAGACCTATGGTGTTGATTATTCAGAAACTTTTTCTCCTGTTGCTAAGTTGAATACTGTCAGAGTCCTTCTTTCTATTGCTGCAAACAAAGATTTGCCTCTATATCAGCTGGATGTAAAATGCTTTTCTGAATGGAGATCTAGTAAAGGAGGTCTACATAAGCCCTCTGCCTGGTTTAGAAGCCTAGTTTGGTCAATAGGTTTGTAA

Coding sequence (CDS)

ATGAGTGAGAATGACAGGTATGATGCTGCTGTTCTTGAAAATATGGAAGAAAAGAACCATGGTGATGAGACTGAGGTTAAAATAGAAACCAGTAACGATGAAGCTGAACAGGGCCATACAAGGAAACATGATGACTATGATCCTTCTCTTTATCTTCCTATTGCACTGAGAAAAGGTACTTGGTCTTGTACAAAGCACTCTATATCTAATTATGTGTCATACGAGAATCTATCACCACAGTTCAGAGCTTTTATTGTCAGCCTTGACTCTATCACAATACCGAAAAATATTTATATTGCTTTAGAGTGCCCTGAATGGAAGAATGTTGTAATAGAAGAGATGAAAGCTCTAGAAAAGAATAACACTTGGGAGATATGTGCCCTACCCAAGGGACACAAGCCCGTGGGATGCAAATGGGTGTTCACTATCAAATACAAAGCAGATGGAACTCTTGACAAACACAAGGCAAGGTTAGTTGCAAAAGGATTTACTCAGACCTATGGTGTTGATTATTCAGAAACTTTTTCTCCTGTTGCTAAGTTGAATACTGTCAGAGTCCTTCTTTCTATTGCTGCAAACAAAGATTTGCCTCTATATCAGCTGGATGTAAAATGCTTTTCTGAATGGAGATCTAGTAAAGGAGGTCTACATAAGCCCTCTGCCTGGTTTAGAAGCCTAGTTTGGTCAATAGGTTTGTAA

Protein sequence

MSENDRYDAAVLENMEEKNHGDETEVKIETSNDEAEQGHTRKHDDYDPSLYLPIALRKGTWSCTKHSISNYVSYENLSPQFRAFIVSLDSITIPKNIYIALECPEWKNVVIEEMKALEKNNTWEICALPKGHKPVGCKWVFTIKYKADGTLDKHKARLVAKGFTQTYGVDYSETFSPVAKLNTVRVLLSIAANKDLPLYQLDVKCFSEWRSSKGGLHKPSAWFRSLVWSIGL

Homology

[Close]

BLAST of Cmc01g0023491 vs. NCBI nr
Match: KAA0040720.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK15346.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 376.3 bits (965), Expect = 1.9e-100
Identity = 183/204 (89.71%), Postives = 190/204 (93.14%), Query Frame = 0


Query: 1   MSENDRYDAAVLENMEEKNHGDETEVKIETSNDEAEQGHTRKHDDYDPSLYLPIALRKGT 60
           MSENDR D AVLENMEEKNHGDETEV+IETSNDEAEQGHTRKHD+YD SL LPIALRKGT
Sbjct: 483 MSENDRSDIAVLENMEEKNHGDETEVRIETSNDEAEQGHTRKHDEYDSSLDLPIALRKGT 542

Query: 61  WSCTKHSISNYVSYENLSPQFRAFIVSLDSITIPKNIYIALECPEWKNVVIEEMKALEKN 120
            SCTKHSISNYVSYENLSPQFRAF  SLDS TIPKNIYIALECP+WKN V+EEMK LEKN
Sbjct: 543 RSCTKHSISNYVSYENLSPQFRAFTASLDSTTIPKNIYIALECPKWKNAVMEEMKTLEKN 602

Query: 121 NTWEICALPKGHKPVGCKWVFTIKYKADGTLDKHKARLVAKGFTQTYGVDYSETFSPVAK 180
           NTWEI ALPKGHKPVGCKWVFT+KYKADGTLDKHKARLVAKGFT+TYGVDYSE FSPVAK
Sbjct: 603 NTWEISALPKGHKPVGCKWVFTLKYKADGTLDKHKARLVAKGFTKTYGVDYSENFSPVAK 662

Query: 181 LNTVRVLLSIAANKDLPLYQLDVK 205
           LNTVRVLLS+A NKD PLYQLDVK
Sbjct: 663 LNTVRVLLSVAVNKDWPLYQLDVK 686

[Close]

BLAST of Cmc01g0023491 vs. NCBI nr
Match: KAA0054163.1 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 373.6 bits (958), Expect = 1.2e-99
Identity = 183/204 (89.71%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 1   MSENDRYDAAVLENMEEKNHGDETEVKIETSNDEAEQGHTRKHDDYDPSLYLPIALRKGT 60
           MSENDR D AVLENMEEKNH DETEV+IETSNDEAEQGHTRKHD+YDPSL LPIALRKGT
Sbjct: 620 MSENDRSDVAVLENMEEKNHSDETEVRIETSNDEAEQGHTRKHDEYDPSLDLPIALRKGT 679

Query: 61  WSCTKHSISNYVSYENLSPQFRAFIVSLDSITIPKNIYIALECPEWKNVVIEEMKALEKN 120
            SCTKHSISNYVSYENLSPQFRAF  SLDS TIPKNIYIALECPEWKN V+EE+KALEKN
Sbjct: 680 RSCTKHSISNYVSYENLSPQFRAFTASLDSTTIPKNIYIALECPEWKNAVMEEIKALEKN 739

Query: 121 NTWEICALPKGHKPVGCKWVFTIKYKADGTLDKHKARLVAKGFTQTYGVDYSETFSPVAK 180
           NTWEICALPKGHK VGCKWVFT+KYKADGTLD+HKARLVAKGFTQTYGVDYS+TFSPVAK
Sbjct: 740 NTWEICALPKGHKLVGCKWVFTLKYKADGTLDRHKARLVAKGFTQTYGVDYSKTFSPVAK 799

Query: 181 LNTVRVLLSIAANKDLPLYQLDVK 205
           LNTVRV LS+A NKD PLYQLDVK
Sbjct: 800 LNTVRV-LSVAVNKDWPLYQLDVK 822

[Close]

BLAST of Cmc01g0023491 vs. NCBI nr
Match: TYK23097.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 370.2 bits (949), Expect = 1.3e-98
Identity = 179/204 (87.75%), Postives = 189/204 (92.65%), Query Frame = 0


Query: 1    MSENDRYDAAVLENMEEKNHGDETEVKIETSNDEAEQGHTRKHDDYDPSLYLPIALRKGT 60
            MSEND+ DAAVLENMEEKNHGD+TEV+IETSNDEAEQGHTRKHD+YDPSL LPIALRKGT
Sbjct: 1154 MSENDKSDAAVLENMEEKNHGDKTEVRIETSNDEAEQGHTRKHDEYDPSLDLPIALRKGT 1213

Query: 61   WSCTKHSISNYVSYENLSPQFRAFIVSLDSITIPKNIYIALECPEWKNVVIEEMKALEKN 120
             SCTKHSISNYVSYENLSPQFRAF   LDS TIP+ IYIALECPEWKN V+EEMKALEKN
Sbjct: 1214 RSCTKHSISNYVSYENLSPQFRAFTAGLDSTTIPRIIYIALECPEWKNAVMEEMKALEKN 1273

Query: 121  NTWEICALPKGHKPVGCKWVFTIKYKADGTLDKHKARLVAKGFTQTYGVDYSETFSPVAK 180
            N  EICALPKGHKPVGCKWVFT+KYKADGTLD+HK RLVAKGFTQTYGVDYSETFSPVAK
Sbjct: 1274 NIGEICALPKGHKPVGCKWVFTLKYKADGTLDRHKTRLVAKGFTQTYGVDYSETFSPVAK 1333

Query: 181  LNTVRVLLSIAANKDLPLYQLDVK 205
            LN VRVLLS+A NKD PLYQLD+K
Sbjct: 1334 LNIVRVLLSVAVNKDWPLYQLDIK 1357

[Close]

BLAST of Cmc01g0023491 vs. NCBI nr
Match: KAA0025138.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 370.2 bits (949), Expect = 1.3e-98
Identity = 179/204 (87.75%), Postives = 189/204 (92.65%), Query Frame = 0


Query: 1    MSENDRYDAAVLENMEEKNHGDETEVKIETSNDEAEQGHTRKHDDYDPSLYLPIALRKGT 60
            MSEND+ DAAVLENMEEKNHGD+TEV+IETSNDEAEQGHTRKHD+YDPSL LPIALRKGT
Sbjct: 1137 MSENDKSDAAVLENMEEKNHGDKTEVRIETSNDEAEQGHTRKHDEYDPSLDLPIALRKGT 1196

Query: 61   WSCTKHSISNYVSYENLSPQFRAFIVSLDSITIPKNIYIALECPEWKNVVIEEMKALEKN 120
             SCTKHSISNYVSYENLSPQFRAF   LDS TIP+ IYIALECPEWKN V+EEMKALEKN
Sbjct: 1197 RSCTKHSISNYVSYENLSPQFRAFTAGLDSTTIPRIIYIALECPEWKNAVMEEMKALEKN 1256

Query: 121  NTWEICALPKGHKPVGCKWVFTIKYKADGTLDKHKARLVAKGFTQTYGVDYSETFSPVAK 180
            N  EICALPKGHKPVGCKWVFT+KYKADGTLD+HK RLVAKGFTQTYGVDYSETFSPVAK
Sbjct: 1257 NIGEICALPKGHKPVGCKWVFTLKYKADGTLDRHKTRLVAKGFTQTYGVDYSETFSPVAK 1316

Query: 181  LNTVRVLLSIAANKDLPLYQLDVK 205
            LN VRVLLS+A NKD PLYQLD+K
Sbjct: 1317 LNIVRVLLSVAVNKDWPLYQLDIK 1340

[Close]

BLAST of Cmc01g0023491 vs. NCBI nr
Match: KAA0055577.1 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa] >TYK01345.1 Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 369.0 bits (946), Expect = 3.0e-98
Identity = 182/204 (89.22%), Postives = 188/204 (92.16%), Query Frame = 0


Query: 1   MSENDRYDAAVLENMEEKNHGDETEVKIETSNDEAEQGHTRKHDDYDPSLYLPIALRKGT 60
           MSENDR DAAVLENMEEKNHGDETEV+IETSNDEAEQGH RK D+YDPSL LPIALRKGT
Sbjct: 1   MSENDRSDAAVLENMEEKNHGDETEVRIETSNDEAEQGHIRKRDEYDPSLDLPIALRKGT 60

Query: 61  WSCTKHSISNYVSYENLSPQFRAFIVSLDSITIPKNIYIALECPEWKNVVIEEMKALEKN 120
            SC KHSISNYVSYENLSPQFRAF  SLDS TIPKNIYIALECPEWKN V+EEMKA EKN
Sbjct: 61  RSCIKHSISNYVSYENLSPQFRAFTASLDSTTIPKNIYIALECPEWKNAVMEEMKAFEKN 120

Query: 121 NTWEICALPKGHKPVGCKWVFTIKYKADGTLDKHKARLVAKGFTQTYGVDYSETFSPVAK 180
           NTWEICALPKGHK VGCKWV T+KYKADGTLD+HKARLVAKGFTQTYGVDYSETFSPVAK
Sbjct: 121 NTWEICALPKGHKLVGCKWVLTLKYKADGTLDRHKARLVAKGFTQTYGVDYSETFSPVAK 180

Query: 181 LNTVRVLLSIAANKDLPLYQLDVK 205
           LNTVRV LS+A NKD PLYQLDVK
Sbjct: 181 LNTVRV-LSVAVNKDWPLYQLDVK 203

[Close]

BLAST of Cmc01g0023491 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-24
Identity = 53/119 (44.54%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 86   VSLDSITIPKNIYIALECPEWKNVVIEEMKALEKNNTWEICALPKGHKP-VGCKWVFTIK 145
            VSL + + P+    AL+   W+N +  E+ A   N+TW++   P  H   VGC+W+FT K
Sbjct: 948  VSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKK 1007

Query: 146  YKADGTLDKHKARLVAKGFTQTYGVDYSETFSPVAKLNTVRVLLSIAANKDLPLYQLDV 204
            Y +DG+L+++KARLVAKG+ Q  G+DY+ETFSPV K  ++R++L +A ++  P+ QLDV
Sbjct: 1008 YNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDV 1066

[Close]

BLAST of Cmc01g0023491 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-23
Identity = 55/115 (47.83%), Postives = 80/115 (69.57%), Query Frame = 0


Query: 94  PKNIYIALECPEWKNVVI----EEMKALEKNNTWEICALPKGHKPVGCKWVFTIKYKADG 153
           P+++   L  PE KN ++    EEM++L+KN T+++  LPKG +P+ CKWVF +K   D 
Sbjct: 811 PESLKEVLSHPE-KNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDC 870

Query: 154 TLDKHKARLVAKGFTQTYGVDYSETFSPVAKLNTVRVLLSIAANKDLPLYQLDVK 205
            L ++KARLV KGF Q  G+D+ E FSPV K+ ++R +LS+AA+ DL + QLDVK
Sbjct: 871 KLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVK 924

[Close]

BLAST of Cmc01g0023491 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-21
Identity = 48/122 (39.34%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 83   AFIVSLDSITIPKNIYIALECPEWKNVVIEEMKALEKNNTWEICALPKGHKP-VGCKWVF 142
            ++  SL + + P+    A++   W+  +  E+ A   N+TW++   P      VGC+W+F
Sbjct: 928  SYATSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIF 987

Query: 143  TIKYKADGTLDKHKARLVAKGFTQTYGVDYSETFSPVAKLNTVRVLLSIAANKDLPLYQL 202
            T K+ +DG+L+++KARLVAKG+ Q  G+DY+ETFSPV K  ++R++L +A ++  P+ QL
Sbjct: 988  TKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQL 1047

Query: 203  DV 204
            DV
Sbjct: 1048 DV 1049

[Close]

BLAST of Cmc01g0023491 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.0e-20
Identity = 46/98 (46.94%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 94  PKNIYIALECPEWKNVVIEEMKALEKNNTWEICALPKGHKPVGCKWVFTIKYKADGTLDK 153
           PK++  AL+ P W   + EE+ AL +N TW +   P     +GCKWVF  K  +DGTLD+
Sbjct: 28  PKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDR 87

Query: 154 HKARLVAKGFTQTYGVDYSETFSPVAKLNTVRVLLSIA 192
            KARLVAKGF Q  G+ + ET+SPV +  T+R +L++A
Sbjct: 88  LKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc01g0023491 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-19
Identity = 43/99 (43.43%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 106  WKNVVIEEMKALEKNNTWEICALPKGHKPVGCKWVFTIKYKADGTLDKHKARLVAKGFTQ 165
            W+  +  E+ A + NNTW I   P+    V  +WVF++KY   G   ++KARLVA+GFTQ
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 166  TYGVDYSETFSPVAKLNTVRVLLSIAANKDLPLYQLDVK 205
             Y +DY ETF+PVA++++ R +LS+    +L ++Q+DVK
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVK 1004

[Close]

BLAST of Cmc01g0023491 vs. ExPASy TrEMBL
Match: A0A5A7TBM3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold189G00090 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 9.1e-101
Identity = 183/204 (89.71%), Postives = 190/204 (93.14%), Query Frame = 0


Query: 1   MSENDRYDAAVLENMEEKNHGDETEVKIETSNDEAEQGHTRKHDDYDPSLYLPIALRKGT 60
           MSENDR D AVLENMEEKNHGDETEV+IETSNDEAEQGHTRKHD+YD SL LPIALRKGT
Sbjct: 483 MSENDRSDIAVLENMEEKNHGDETEVRIETSNDEAEQGHTRKHDEYDSSLDLPIALRKGT 542

Query: 61  WSCTKHSISNYVSYENLSPQFRAFIVSLDSITIPKNIYIALECPEWKNVVIEEMKALEKN 120
            SCTKHSISNYVSYENLSPQFRAF  SLDS TIPKNIYIALECP+WKN V+EEMK LEKN
Sbjct: 543 RSCTKHSISNYVSYENLSPQFRAFTASLDSTTIPKNIYIALECPKWKNAVMEEMKTLEKN 602

Query: 121 NTWEICALPKGHKPVGCKWVFTIKYKADGTLDKHKARLVAKGFTQTYGVDYSETFSPVAK 180
           NTWEI ALPKGHKPVGCKWVFT+KYKADGTLDKHKARLVAKGFT+TYGVDYSE FSPVAK
Sbjct: 603 NTWEISALPKGHKPVGCKWVFTLKYKADGTLDKHKARLVAKGFTKTYGVDYSENFSPVAK 662

Query: 181 LNTVRVLLSIAANKDLPLYQLDVK 205
           LNTVRVLLS+A NKD PLYQLDVK
Sbjct: 663 LNTVRVLLSVAVNKDWPLYQLDVK 686

[Close]

BLAST of Cmc01g0023491 vs. ExPASy TrEMBL
Match: A0A5A7UDS7 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00920 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 5.9e-100
Identity = 183/204 (89.71%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 1   MSENDRYDAAVLENMEEKNHGDETEVKIETSNDEAEQGHTRKHDDYDPSLYLPIALRKGT 60
           MSENDR D AVLENMEEKNH DETEV+IETSNDEAEQGHTRKHD+YDPSL LPIALRKGT
Sbjct: 620 MSENDRSDVAVLENMEEKNHSDETEVRIETSNDEAEQGHTRKHDEYDPSLDLPIALRKGT 679

Query: 61  WSCTKHSISNYVSYENLSPQFRAFIVSLDSITIPKNIYIALECPEWKNVVIEEMKALEKN 120
            SCTKHSISNYVSYENLSPQFRAF  SLDS TIPKNIYIALECPEWKN V+EE+KALEKN
Sbjct: 680 RSCTKHSISNYVSYENLSPQFRAFTASLDSTTIPKNIYIALECPEWKNAVMEEIKALEKN 739

Query: 121 NTWEICALPKGHKPVGCKWVFTIKYKADGTLDKHKARLVAKGFTQTYGVDYSETFSPVAK 180
           NTWEICALPKGHK VGCKWVFT+KYKADGTLD+HKARLVAKGFTQTYGVDYS+TFSPVAK
Sbjct: 740 NTWEICALPKGHKLVGCKWVFTLKYKADGTLDRHKARLVAKGFTQTYGVDYSKTFSPVAK 799

Query: 181 LNTVRVLLSIAANKDLPLYQLDVK 205
           LNTVRV LS+A NKD PLYQLDVK
Sbjct: 800 LNTVRV-LSVAVNKDWPLYQLDVK 822

[Close]

BLAST of Cmc01g0023491 vs. ExPASy TrEMBL
Match: A0A5A7SG80 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold124G00380 PE=3 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 6.5e-99
Identity = 179/204 (87.75%), Postives = 189/204 (92.65%), Query Frame = 0


Query: 1    MSENDRYDAAVLENMEEKNHGDETEVKIETSNDEAEQGHTRKHDDYDPSLYLPIALRKGT 60
            MSEND+ DAAVLENMEEKNHGD+TEV+IETSNDEAEQGHTRKHD+YDPSL LPIALRKGT
Sbjct: 1137 MSENDKSDAAVLENMEEKNHGDKTEVRIETSNDEAEQGHTRKHDEYDPSLDLPIALRKGT 1196

Query: 61   WSCTKHSISNYVSYENLSPQFRAFIVSLDSITIPKNIYIALECPEWKNVVIEEMKALEKN 120
             SCTKHSISNYVSYENLSPQFRAF   LDS TIP+ IYIALECPEWKN V+EEMKALEKN
Sbjct: 1197 RSCTKHSISNYVSYENLSPQFRAFTAGLDSTTIPRIIYIALECPEWKNAVMEEMKALEKN 1256

Query: 121  NTWEICALPKGHKPVGCKWVFTIKYKADGTLDKHKARLVAKGFTQTYGVDYSETFSPVAK 180
            N  EICALPKGHKPVGCKWVFT+KYKADGTLD+HK RLVAKGFTQTYGVDYSETFSPVAK
Sbjct: 1257 NIGEICALPKGHKPVGCKWVFTLKYKADGTLDRHKTRLVAKGFTQTYGVDYSETFSPVAK 1316

Query: 181  LNTVRVLLSIAANKDLPLYQLDVK 205
            LN VRVLLS+A NKD PLYQLD+K
Sbjct: 1317 LNIVRVLLSVAVNKDWPLYQLDIK 1340

[Close]

BLAST of Cmc01g0023491 vs. ExPASy TrEMBL
Match: A0A5D3DHC0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00790 PE=3 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 6.5e-99
Identity = 179/204 (87.75%), Postives = 189/204 (92.65%), Query Frame = 0


Query: 1    MSENDRYDAAVLENMEEKNHGDETEVKIETSNDEAEQGHTRKHDDYDPSLYLPIALRKGT 60
            MSEND+ DAAVLENMEEKNHGD+TEV+IETSNDEAEQGHTRKHD+YDPSL LPIALRKGT
Sbjct: 1154 MSENDKSDAAVLENMEEKNHGDKTEVRIETSNDEAEQGHTRKHDEYDPSLDLPIALRKGT 1213

Query: 61   WSCTKHSISNYVSYENLSPQFRAFIVSLDSITIPKNIYIALECPEWKNVVIEEMKALEKN 120
             SCTKHSISNYVSYENLSPQFRAF   LDS TIP+ IYIALECPEWKN V+EEMKALEKN
Sbjct: 1214 RSCTKHSISNYVSYENLSPQFRAFTAGLDSTTIPRIIYIALECPEWKNAVMEEMKALEKN 1273

Query: 121  NTWEICALPKGHKPVGCKWVFTIKYKADGTLDKHKARLVAKGFTQTYGVDYSETFSPVAK 180
            N  EICALPKGHKPVGCKWVFT+KYKADGTLD+HK RLVAKGFTQTYGVDYSETFSPVAK
Sbjct: 1274 NIGEICALPKGHKPVGCKWVFTLKYKADGTLDRHKTRLVAKGFTQTYGVDYSETFSPVAK 1333

Query: 181  LNTVRVLLSIAANKDLPLYQLDVK 205
            LN VRVLLS+A NKD PLYQLD+K
Sbjct: 1334 LNIVRVLLSVAVNKDWPLYQLDIK 1357

[Close]

BLAST of Cmc01g0023491 vs. ExPASy TrEMBL
Match: A0A5D3BQ91 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00270 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.4e-98
Identity = 182/204 (89.22%), Postives = 188/204 (92.16%), Query Frame = 0


Query: 1   MSENDRYDAAVLENMEEKNHGDETEVKIETSNDEAEQGHTRKHDDYDPSLYLPIALRKGT 60
           MSENDR DAAVLENMEEKNHGDETEV+IETSNDEAEQGH RK D+YDPSL LPIALRKGT
Sbjct: 1   MSENDRSDAAVLENMEEKNHGDETEVRIETSNDEAEQGHIRKRDEYDPSLDLPIALRKGT 60

Query: 61  WSCTKHSISNYVSYENLSPQFRAFIVSLDSITIPKNIYIALECPEWKNVVIEEMKALEKN 120
            SC KHSISNYVSYENLSPQFRAF  SLDS TIPKNIYIALECPEWKN V+EEMKA EKN
Sbjct: 61  RSCIKHSISNYVSYENLSPQFRAFTASLDSTTIPKNIYIALECPEWKNAVMEEMKAFEKN 120

Query: 121 NTWEICALPKGHKPVGCKWVFTIKYKADGTLDKHKARLVAKGFTQTYGVDYSETFSPVAK 180
           NTWEICALPKGHK VGCKWV T+KYKADGTLD+HKARLVAKGFTQTYGVDYSETFSPVAK
Sbjct: 121 NTWEICALPKGHKLVGCKWVLTLKYKADGTLDRHKARLVAKGFTQTYGVDYSETFSPVAK 180

Query: 181 LNTVRVLLSIAANKDLPLYQLDVK 205
           LNTVRV LS+A NKD PLYQLDVK
Sbjct: 181 LNTVRV-LSVAVNKDWPLYQLDVK 203

[Close]

BLAST of Cmc01g0023491 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 148.7 bits (374), Expect = 5.9e-36
Identity = 73/172 (42.44%), Postives = 104/172 (60.47%), Query Frame = 0


Query: 32  NDEAEQGHTRKHDDYDPSLYLPIALRKGTWSCTKHSISNYVSYENLSPQFRAFIVSLDSI 91
           ND  E      H       YL         S T H IS ++SYE +SP + +F+V +   
Sbjct: 24  NDVPEPSVHTSHRRTRKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKA 83

Query: 92  TIPKNIYIALECPEWKNVVIEEMKALEKNNTWEICALPKGHKPVGCKWVFTIKYKADGTL 151
             P     A E   W   + +E+ A+E  +TWEIC LP   KP+GCKWV+ IKY +DGT+
Sbjct: 84  KEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTI 143

Query: 152 DKHKARLVAKGFTQTYGVDYSETFSPVAKLNTVRVLLSIAANKDLPLYQLDV 204
           +++KARLVAKG+TQ  G+D+ ETFSPV KL +V+++L+I+A  +  L+QLD+
Sbjct: 144 ERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDI 195

[Close]

BLAST of Cmc01g0023491 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-21
Identity = 46/98 (46.94%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 94  PKNIYIALECPEWKNVVIEEMKALEKNNTWEICALPKGHKPVGCKWVFTIKYKADGTLDK 153
           PK++  AL+ P W   + EE+ AL +N TW +   P     +GCKWVF  K  +DGTLD+
Sbjct: 28  PKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDR 87

Query: 154 HKARLVAKGFTQTYGVDYSETFSPVAKLNTVRVLLSIA 192
            KARLVAKGF Q  G+ + ET+SPV +  T+R +L++A
Sbjct: 88  LKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc01g0023491 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040720.1	1.9e-100	89.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0054163.1	1.2e-99	89.71	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa]	[more]
TYK23097.1	1.3e-98	87.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0025138.1	1.3e-98	87.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0055577.1	3.0e-98	89.22	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa] >T...	[more]

BLAST of Cmc01g0023491 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.7e-24	44.54	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P10978	1.9e-23	47.83	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	1.1e-21	39.34	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92520	2.0e-20	46.94	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]
P04146	1.3e-19	43.43	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc01g0023491 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBM3	9.1e-101	89.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UDS7	5.9e-100	89.71	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A5A7SG80	6.5e-99	87.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DHC0	6.5e-99	87.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BQ91	1.4e-98	89.22	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]

BLAST of Cmc01g0023491 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	5.9e-36	42.44	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.4e-21	46.94	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 120..205 e-value: 8.2E-26 score: 91.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 94..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0023491.1	Cmc01g0023491.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0032456	endocytic recycling
biological_process	GO:0016310	phosphorylation
biological_process	GO:0015031	protein transport
cellular_component	GO:0005768	endosome
molecular_function	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003676	nucleic acid binding