Cmc01g0022401 (gene) Melon (Charmono) v1.1

Overview
NameCmc01g0022401
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
LocationCMiso1.1chr01: 21651760 .. 21652554 (-)
RNA-Seq ExpressionCmc01g0022401
SyntenyCmc01g0022401
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACTATAAATGTGGCGGTGAATGATAATGAGAAGTCGTTGTACAGACGAATAGATGACGATAATGATTTACCAATTCAACCTTCTGTTGCACCTAAATTAGTTGTTGCTGATGTTTCTTCAGTTGATACGATTGTTACTAACTATAGTGATAGCTCTAAATCAACTCAGAAGAAAGTAATGTCTGATGCAAGTGAATTTATTCCATCTTCACATGTTCAAAAGAATCATCCATCAAGTTCCATAATTGGAGGTCCCTCTGCTGGGATTACGACCAGAAAGAAGGATAAGATTGATTATACGAAGATGATTGCAAATATTTGCTACACTTCGTCTATTGAGCCTACATCAGTCAATAAAGCTCTCAAAGATGAATTCTGGATAAATGCAATGCAAGGGGAACTATTACAATTCAAACAAAATAATTTACGAACTTTGGTTCCTAAACCTATGGAAGCAACCATTATAGGAACCAAATGGATATTAAAAAGCAAGACAGATGAGAGGGGGTCTGTAATAAGAAACACAACCAGATTGGTTGCACAAGGCTATTCTCAGAAAGAAGCAGTGGATTTTGATGAAATCTTCGCACCTGTAGCTAGACTTGAAACTATTCACCTCCTACTTAGCATATCATGTGTTCGAAAATTCAAATTGTATCAGATGGATGTTAAAAGTGCCTTTTTAAATGGGTACTTAAATGAAGAAGTGTATATAGCTCAACCAAGGGTTTTATTGATTCGGTTTATCCTCAGCATGTGTATAAACCCAATAAAGCTCTATATGGACTAA

mRNA sequence

ATGGAAACTATAAATGTGGCGGTGAATGATAATGAGAAGTCGTTGTACAGACGAATAGATGACGATAATGATTTACCAATTCAACCTTCTGTTGCACCTAAATTAGTTGTTGCTGATGTTTCTTCAGTTGATACGATTGTTACTAACTATAGTGATAGCTCTAAATCAACTCAGAAGAAAGTAATGTCTGATGCAAGTGAATTTATTCCATCTTCACATGTTCAAAAGAATCATCCATCAAGTTCCATAATTGGAGGTCCCTCTGCTGGGATTACGACCAGAAAGAAGGATAAGATTGATTATACGAAGATGATTGCAAATATTTGCTACACTTCGTCTATTGAGCCTACATCAGTCAATAAAGCTCTCAAAGATGAATTCTGGATAAATGCAATGCAAGGGGAACTATTACAATTCAAACAAAATAATTTACGAACTTTGGTTCCTAAACCTATGGAAGCAACCATTATAGGAACCAAATGGATATTAAAAAGCAAGACAGATGAGAGGGGGTCTGTAATAAGAAACACAACCAGATTGGTTGCACAAGGCTATTCTCAGAAAGAAGCAGTGGATTTTGATGAAATCTTCGCACCTGTAGCTAGACTTGAAACTATTCACCTCCTACTTAGCATATCATGTGTTCGAAAATTCAAATTGTATCAGATGGATGTTAAAAGTGCCTTTTTAAATGGGTACTTAAATGAAGAAGTGTATATAGCTCAACCAAGGGTTTTATTGATTCGGTTTATCCTCAGCATGTGTATAAACCCAATAAAGCTCTATATGGACTAA

Coding sequence (CDS)

ATGGAAACTATAAATGTGGCGGTGAATGATAATGAGAAGTCGTTGTACAGACGAATAGATGACGATAATGATTTACCAATTCAACCTTCTGTTGCACCTAAATTAGTTGTTGCTGATGTTTCTTCAGTTGATACGATTGTTACTAACTATAGTGATAGCTCTAAATCAACTCAGAAGAAAGTAATGTCTGATGCAAGTGAATTTATTCCATCTTCACATGTTCAAAAGAATCATCCATCAAGTTCCATAATTGGAGGTCCCTCTGCTGGGATTACGACCAGAAAGAAGGATAAGATTGATTATACGAAGATGATTGCAAATATTTGCTACACTTCGTCTATTGAGCCTACATCAGTCAATAAAGCTCTCAAAGATGAATTCTGGATAAATGCAATGCAAGGGGAACTATTACAATTCAAACAAAATAATTTACGAACTTTGGTTCCTAAACCTATGGAAGCAACCATTATAGGAACCAAATGGATATTAAAAAGCAAGACAGATGAGAGGGGGTCTGTAATAAGAAACACAACCAGATTGGTTGCACAAGGCTATTCTCAGAAAGAAGCAGTGGATTTTGATGAAATCTTCGCACCTGTAGCTAGACTTGAAACTATTCACCTCCTACTTAGCATATCATGTGTTCGAAAATTCAAATTGTATCAGATGGATGTTAAAAGTGCCTTTTTAAATGGGTACTTAAATGAAGAAGTGTATATAGCTCAACCAAGGGTTTTATTGATTCGGTTTATCCTCAGCATGTGTATAAACCCAATAAAGCTCTATATGGACTAA

Protein sequence

METINVAVNDNEKSLYRRIDDDNDLPIQPSVAPKLVVADVSSVDTIVTNYSDSSKSTQKKVMSDASEFIPSSHVQKNHPSSSIIGGPSAGITTRKKDKIDYTKMIANICYTSSIEPTSVNKALKDEFWINAMQGELLQFKQNNLRTLVPKPMEATIIGTKWILKSKTDERGSVIRNTTRLVAQGYSQKEAVDFDEIFAPVARLETIHLLLSISCVRKFKLYQMDVKSAFLNGYLNEEVYIAQPRVLLIRFILSMCINPIKLYMD
Homology
[Close]
BLAST of Cmc01g0022401 vs. NCBI nr
Match: KAA0035996.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 311.2 bits (796), Expect = 8.4e-81
Identity = 161/244 (65.98%), Postives = 189/244 (77.46%), Query Frame = 0 

Query: 1   METINVAVNDNEKSLYRRIDDDNDLPIQPSVAPKLVVADVSSVDTIVTNYSDSSKSTQKK 60
           METIN+ VND+E +  ++IDD+ D   + ++AP    ADVS  D   TN +  SK T K+
Sbjct: 220 METINIVVNDSEYT-NKKIDDEEDETPKVTLAPTSTPADVSKADIETTNSNLCSKYTSKE 279

Query: 61  VMSDASEFIPSSHVQKNHPSSSIIGGPSAGITTRKKDKIDYTKMIANICYTSSIEPTSVN 120
            + + +  IPSSHV KNHPSSSIIG PSAGITTRKKDKIDY+KMI ++CYTS+IEPTSV 
Sbjct: 280 AVVEGTLPIPSSHVWKNHPSSSIIGDPSAGITTRKKDKIDYSKMIIDLCYTSAIEPTSVE 339

Query: 121 KALKDEFWINAMQGELLQFKQNNLRTLVPKPMEATIIGTKWILKSKTDERGSVIRNTTRL 180
            ALKDE+WINAMQ EL+QFK+NN+ TLVPKP    IIGTKW+ K+KTDE G V RN   L
Sbjct: 340 AALKDEYWINAMQEELVQFKRNNVWTLVPKPNGVNIIGTKWVFKNKTDESGCVTRNKACL 399

Query: 181 VAQGYSQKEAVDFDEIFAPVARLETIHLLLSISCVRKFKLYQMDVKSAFLNGYLNEEVYI 240
           VAQGY+Q E VDFDEIF PV RLE I LLL ISC+ KFKLYQMDVKS FLNGYLNEEVY+
Sbjct: 400 VAQGYAQIEGVDFDEIFVPVTRLEAIRLLLGISCIHKFKLYQMDVKSTFLNGYLNEEVYV 459

Query: 241 AQPR 245
           AQP+
Sbjct: 460 AQPK 462

[Close]
BLAST of Cmc01g0022401 vs. NCBI nr
Match: KAA0032884.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK09394.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 296.6 bits (758), Expect = 2.1e-76
Identity = 154/244 (63.11%), Postives = 183/244 (75.00%), Query Frame = 0 

Query: 1   METINVAVNDNEKSLYRRIDDDNDLPIQPSVAPKLVVADVSSVDTIVTNYSDSSKSTQKK 60
           METINV VND E +  ++ID++ D     ++ P    ADVS  +   TN   SS ST K+
Sbjct: 1   METINVMVNDYEYT-NKQIDNEEDEAPTVTLVPTSTPADVSKANIETTNSDLSSNSTTKE 60

Query: 61  VMSDASEFIPSSHVQKNHPSSSIIGGPSAGITTRKKDKIDYTKMIANICYTSSIEPTSVN 120
            + + +  IPSSHV+KNHPSSSIIG PS GITTRKKDK+DY+KMIA++CY S+IEPTS+ 
Sbjct: 61  AIVEGTLSIPSSHVRKNHPSSSIIGDPSTGITTRKKDKVDYSKMIADLCYASAIEPTSIE 120

Query: 121 KALKDEFWINAMQGELLQFKQNNLRTLVPKPMEATIIGTKWILKSKTDERGSVIRNTTRL 180
             LKDE+WIN MQ ELLQFK NN+ TLVPKP    I GTKWI K+KTDE G V RN  RL
Sbjct: 121 VTLKDEYWINVMQEELLQFKHNNVWTLVPKPNRVNITGTKWIFKNKTDESGCVTRNKARL 180

Query: 181 VAQGYSQKEAVDFDEIFAPVARLETIHLLLSISCVRKFKLYQMDVKSAFLNGYLNEEVYI 240
           VAQGY+Q E V+FDE FA V+RLE I LLL ISC+RKFKLYQM+VKSA  NGYLNEEVY+
Sbjct: 181 VAQGYAQVEGVNFDETFASVSRLEAIRLLLGISCIRKFKLYQMNVKSALQNGYLNEEVYV 240

Query: 241 AQPR 245
           AQP+
Sbjct: 241 AQPK 243

[Close]
BLAST of Cmc01g0022401 vs. NCBI nr
Match: KAA0058253.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.5 bits (750), Expect = 1.8e-75
Identity = 154/244 (63.11%), Postives = 182/244 (74.59%), Query Frame = 0 

Query: 1   METINVAVNDNEKSLYRRIDDDNDLPIQPSVAPKLVVADVSSVDTIVTNYSDSSKSTQKK 60
           METINV VND+ K   ++IDD+ D   + ++ P     DVS  D   TN+  S KST K+
Sbjct: 1   METINVLVNDS-KYTNKQIDDEEDEAPKVTLVPTSTSVDVSKADIETTNFDLSYKSTSKE 60

Query: 61  VMSDASEFIPSSHVQKNHPSSSIIGGPSAGITTRKKDKIDYTKMIANICYTSSIEPTSVN 120
              + +  IPSSH +K+H SSSIIG P  GIT+RKKDK+DY+KMIA++CY  +IE TS  
Sbjct: 61  ATVEGTLSIPSSHFRKSHQSSSIIGDPFTGITSRKKDKVDYSKMIADLCYALAIELTSFE 120

Query: 121 KALKDEFWINAMQGELLQFKQNNLRTLVPKPMEATIIGTKWILKSKTDERGSVIRNTTRL 180
            ALKDE+WINAMQ ELL FK+NN+ TLVPKP EA IIGTKWI K+K DE G V RN  RL
Sbjct: 121 AALKDEYWINAMQEELLPFKRNNVWTLVPKPDEANIIGTKWIFKNKIDESGCVTRNKARL 180

Query: 181 VAQGYSQKEAVDFDEIFAPVARLETIHLLLSISCVRKFKLYQMDVKSAFLNGYLNEEVYI 240
           VAQGY+Q E VDFDE FAPVARLE I LLL ISC+RKFK YQMDVK AFLNGYLNEE+Y+
Sbjct: 181 VAQGYAQIEGVDFDETFAPVARLEAICLLLGISCIRKFKFYQMDVKRAFLNGYLNEELYV 240

Query: 241 AQPR 245
           AQP+
Sbjct: 241 AQPK 243

[Close]
BLAST of Cmc01g0022401 vs. NCBI nr
Match: KAA0037650.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK22795.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 289.3 bits (739), Expect = 3.4e-74
Identity = 148/244 (60.66%), Postives = 189/244 (77.46%), Query Frame = 0 

Query: 1   METINVAVNDNEKSLYRRIDDDNDLPIQPSVAPKLVVADVSSVDTIVTNYSDSSKSTQKK 60
           METINV VND E ++ +   +D++  + P V    +         + +  +DSS + +  
Sbjct: 1   METINVVVNDFESNVNQFNIEDDETHVTPEVTSTPLDEMPKGESQLDSAKTDSSITDE-- 60

Query: 61  VMSDASEFIPSSHVQKNHPSSSIIGGPSAGITTRKKDKIDYTKMIANICYTSSIEPTSVN 120
           V+++ +  +PS++V+KNHPSSSIIG PSAGITT++K+K+DYTKMIA++CY S+IEPTSV 
Sbjct: 61  VINNETVLVPSAYVKKNHPSSSIIGDPSAGITTKRKEKVDYTKMIADLCYVSAIEPTSVE 120

Query: 121 KALKDEFWINAMQGELLQFKQNNLRTLVPKPMEATIIGTKWILKSKTDERGSVIRNTTRL 180
            A KDE+WINAMQ ELLQFK+NN+ T+VPKP  A +IGTKWI K+KTDE GS+IRN  RL
Sbjct: 121 NAFKDEYWINAMQEELLQFKRNNVWTMVPKPDGANVIGTKWIFKNKTDESGSIIRNKARL 180

Query: 181 VAQGYSQKEAVDFDEIFAPVARLETIHLLLSISCVRKFKLYQMDVKSAFLNGYLNEEVYI 240
           +AQGY+Q E VDFDE FA VARLE I LLLSISC RKFKL++MDVKSAFLNGYLNEEVY+
Sbjct: 181 IAQGYAQVEGVDFDETFALVARLEAIRLLLSISCFRKFKLFRMDVKSAFLNGYLNEEVYV 240

Query: 241 AQPR 245
           AQP+
Sbjct: 241 AQPK 242

[Close]
BLAST of Cmc01g0022401 vs. NCBI nr
Match: TYJ99674.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 281.6 bits (719), Expect = 7.1e-72
Identity = 144/244 (59.02%), Postives = 182/244 (74.59%), Query Frame = 0 

Query: 1   METINVAVNDNEKSLYRRIDDDNDLPIQPSVAPKLVVADVSSVDTIVTNYSDSSKSTQKK 60
           ++TINV VND E  + +R +D+ND   + +V     + +    D        +SKS  K 
Sbjct: 100 IDTINVVVNDFE-PIAKRTNDENDEAPKETVGSPTALIEEPKADI-------NSKSISKD 159

Query: 61  VMSDASEFIPSSHVQKNHPSSSIIGGPSAGITTRKKDKIDYTKMIANICYTSSIEPTSVN 120
           V ++ +E IPS+HV+KNHPSSSIIG PS GITTRKK+K+DY KMI ++CYT +IE +S++
Sbjct: 160 VTAEVTELIPSAHVRKNHPSSSIIGNPSVGITTRKKEKVDYVKMIGDLCYTFAIEHSSID 219

Query: 121 KALKDEFWINAMQGELLQFKQNNLRTLVPKPMEATIIGTKWILKSKTDERGSVIRNTTRL 180
            ALKDE+WINAMQ ELLQF+ NN+ TLVPKP  A IIGTKW+ K+KTDE   V RN  R 
Sbjct: 220 VALKDEYWINAMQEELLQFRHNNVWTLVPKPEGANIIGTKWVFKNKTDEARYVTRNKARF 279

Query: 181 VAQGYSQKEAVDFDEIFAPVARLETIHLLLSISCVRKFKLYQMDVKSAFLNGYLNEEVYI 240
           VAQGY+Q E V+FDE FAPVARLE I LLL +SC+R+FKLYQM+VKS FL+GYLNEEVY+
Sbjct: 280 VAQGYAQVEGVNFDETFAPVARLEAIRLLLGLSCIRRFKLYQMNVKSVFLSGYLNEEVYV 335

Query: 241 AQPR 245
           AQP+
Sbjct: 340 AQPK 335

[Close]
BLAST of Cmc01g0022401 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 103.2 bits (256), Expect = 4.6e-21
Identity = 49/117 (41.88%), Postives = 74/117 (63.25%), Query Frame = 0 

Query: 128  WINAMQGELLQFKQNNLRTLVPKPMEATIIGTKWILKSKTDERGSVIRNTTRLVAQGYSQ 187
            W  A+  EL   K NN  T+  +P    I+ ++W+   K +E G+ IR   RLVA+G++Q
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 188  KEAVDFDEIFAPVARLETIHLLLSISCVRKFKLYQMDVKSAFLNGYLNEEVYIAQPR 245
            K  +D++E FAPVAR+ +   +LS+      K++QMDVK+AFLNG L EE+Y+  P+
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQ 1022

[Close]
BLAST of Cmc01g0022401 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-20
Identity = 69/211 (32.70%), Postives = 106/211 (50.24%), Query Frame = 0 

Query: 42   SVDTIVTNYSDSSKSTQKKVMSDASEFIPSSHVQKNHPSSSIIGGPSA------GITTRK 101
            S+ T   + S S   T     S  S   PS  +    P + I+   +        + TR 
Sbjct: 874  SLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNNQAPLNTHSMGTRA 933

Query: 102  KDKI--DYTKMIANICYTSSIEPTSVNKALKDEFWINAMQGELLQFKQNNLRTLV-PKPM 161
            K  I     K    +   +  EP +  +ALKDE W NAM  E+     N+   LV P P 
Sbjct: 934  KAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPS 993

Query: 162  EATIIGTKWILKSKTDERGSVIRNTTRLVAQGYSQKEAVDFDEIFAPVARLETIHLLLSI 221
              TI+G +WI   K +  GS+ R   RLVA+GY+Q+  +D+ E F+PV +  +I ++L +
Sbjct: 994  HVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGV 1053

Query: 222  SCVRKFKLYQMDVKSAFLNGYLNEEVYIAQP 244
            +  R + + Q+DV +AFL G L ++VY++QP
Sbjct: 1054 AVDRSWPIRQLDVNNAFLQGTLTDDVYMSQP 1084

[Close]
BLAST of Cmc01g0022401 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-19
Identity = 73/229 (31.88%), Postives = 113/229 (49.34%), Query Frame = 0 

Query: 20   DDDNDLPIQPSVAPKLVVADVSSVDTIVTNYSDSSKSTQKKVMSDASEFIPSSHVQKNHP 79
            + ++ LP  P  +P +     S    I    S SS ST    +       P   V    P
Sbjct: 851  NQNSPLPQSPISSPHIPTPSTS----ISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAP 910

Query: 80   SSSIIGGPSAGITTRKKDKIDYTKMIANICYTSSI----EPTSVNKALKDEFWINAMQGE 139
             +      +  + TR KD I   K      Y +S+    EP +  +A+KD+ W  AM  E
Sbjct: 911  VN------THSMATRAKDGI--RKPNQKYSYATSLAANSEPRTAIQAMKDDRWRQAMGSE 970

Query: 140  LLQFKQNNLRTLV-PKPMEATIIGTKWILKSKTDERGSVIRNTTRLVAQGYSQKEAVDFD 199
            +     N+   LV P P   TI+G +WI   K +  GS+ R   RLVA+GY+Q+  +D+ 
Sbjct: 971  INAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYA 1030

Query: 200  EIFAPVARLETIHLLLSISCVRKFKLYQMDVKSAFLNGYLNEEVYIAQP 244
            E F+PV +  +I ++L ++  R + + Q+DV +AFL G L +EVY++QP
Sbjct: 1031 ETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQP 1067

[Close]
BLAST of Cmc01g0022401 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.1e-18
Identity = 49/132 (37.12%), Postives = 78/132 (59.09%), Query Frame = 0 

Query: 115 EPTSVNKAL---KDEFWINAMQGELLQFKQNNLRTLVPKPMEATIIGTKWILKSKTDERG 174
           EP S+ + L   +    + AMQ E+   ++N    LV  P     +  KW+ K K D   
Sbjct: 810 EPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDC 869

Query: 175 SVIRNTTRLVAQGYSQKEAVDFDEIFAPVARLETIHLLLSISCVRKFKLYQMDVKSAFLN 234
            ++R   RLV +G+ QK+ +DFDEIF+PV ++ +I  +LS++     ++ Q+DVK+AFL+
Sbjct: 870 KLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLH 929

Query: 235 GYLNEEVYIAQP 244
           G L EE+Y+ QP
Sbjct: 930 GDLEEEIYMEQP 941

[Close]
BLAST of Cmc01g0022401 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.4e-16
Identity = 60/174 (34.48%), Postives = 87/174 (50.00%), Query Frame = 0 

Query: 93  TRKKDKIDYTKMIANICYTSSI--EPTSVNKALKDEFWINAMQGELLQFKQNNLRTLVPK 152
           TR K  I+      ++  T++I  EP SV  ALKD  W  AMQ EL    +N    LVP 
Sbjct: 3   TRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPP 62

Query: 153 PMEATIIGTKWILKSKTDERGSVIRNTTRLVAQGYSQKEAVDFDEIFAPVARLETIHLLL 212
           P+   I+G KW+ K+K    G++ R   RLVA+G+ Q+E + F E ++PV R  TI  +L
Sbjct: 63  PVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTIL 122

Query: 213 SISCVRKFKLYQMDV--------KSAFLNGYLNEEVYIAQPRVLLIRFILSMCI 257
           +++        Q++V        K  F  G   ++       VL I FI  MC+
Sbjct: 123 NVA-------QQLEVGQSINWMFKMHFSMGIFKKKFICINLLVLRILFIHPMCV 169

[Close]
BLAST of Cmc01g0022401 vs. ExPASy TrEMBL
Match: A0A5A7T197 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G002100 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 4.1e-81
Identity = 161/244 (65.98%), Postives = 189/244 (77.46%), Query Frame = 0 

Query: 1   METINVAVNDNEKSLYRRIDDDNDLPIQPSVAPKLVVADVSSVDTIVTNYSDSSKSTQKK 60
           METIN+ VND+E +  ++IDD+ D   + ++AP    ADVS  D   TN +  SK T K+
Sbjct: 220 METINIVVNDSEYT-NKKIDDEEDETPKVTLAPTSTPADVSKADIETTNSNLCSKYTSKE 279

Query: 61  VMSDASEFIPSSHVQKNHPSSSIIGGPSAGITTRKKDKIDYTKMIANICYTSSIEPTSVN 120
            + + +  IPSSHV KNHPSSSIIG PSAGITTRKKDKIDY+KMI ++CYTS+IEPTSV 
Sbjct: 280 AVVEGTLPIPSSHVWKNHPSSSIIGDPSAGITTRKKDKIDYSKMIIDLCYTSAIEPTSVE 339

Query: 121 KALKDEFWINAMQGELLQFKQNNLRTLVPKPMEATIIGTKWILKSKTDERGSVIRNTTRL 180
            ALKDE+WINAMQ EL+QFK+NN+ TLVPKP    IIGTKW+ K+KTDE G V RN   L
Sbjct: 340 AALKDEYWINAMQEELVQFKRNNVWTLVPKPNGVNIIGTKWVFKNKTDESGCVTRNKACL 399

Query: 181 VAQGYSQKEAVDFDEIFAPVARLETIHLLLSISCVRKFKLYQMDVKSAFLNGYLNEEVYI 240
           VAQGY+Q E VDFDEIF PV RLE I LLL ISC+ KFKLYQMDVKS FLNGYLNEEVY+
Sbjct: 400 VAQGYAQIEGVDFDEIFVPVTRLEAIRLLLGISCIHKFKLYQMDVKSTFLNGYLNEEVYV 459

Query: 241 AQPR 245
           AQP+
Sbjct: 460 AQPK 462

[Close]
BLAST of Cmc01g0022401 vs. ExPASy TrEMBL
Match: A0A5D3CDX9 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold504G00210 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.0e-76
Identity = 154/244 (63.11%), Postives = 183/244 (75.00%), Query Frame = 0 

Query: 1   METINVAVNDNEKSLYRRIDDDNDLPIQPSVAPKLVVADVSSVDTIVTNYSDSSKSTQKK 60
           METINV VND E +  ++ID++ D     ++ P    ADVS  +   TN   SS ST K+
Sbjct: 1   METINVMVNDYEYT-NKQIDNEEDEAPTVTLVPTSTPADVSKANIETTNSDLSSNSTTKE 60

Query: 61  VMSDASEFIPSSHVQKNHPSSSIIGGPSAGITTRKKDKIDYTKMIANICYTSSIEPTSVN 120
            + + +  IPSSHV+KNHPSSSIIG PS GITTRKKDK+DY+KMIA++CY S+IEPTS+ 
Sbjct: 61  AIVEGTLSIPSSHVRKNHPSSSIIGDPSTGITTRKKDKVDYSKMIADLCYASAIEPTSIE 120

Query: 121 KALKDEFWINAMQGELLQFKQNNLRTLVPKPMEATIIGTKWILKSKTDERGSVIRNTTRL 180
             LKDE+WIN MQ ELLQFK NN+ TLVPKP    I GTKWI K+KTDE G V RN  RL
Sbjct: 121 VTLKDEYWINVMQEELLQFKHNNVWTLVPKPNRVNITGTKWIFKNKTDESGCVTRNKARL 180

Query: 181 VAQGYSQKEAVDFDEIFAPVARLETIHLLLSISCVRKFKLYQMDVKSAFLNGYLNEEVYI 240
           VAQGY+Q E V+FDE FA V+RLE I LLL ISC+RKFKLYQM+VKSA  NGYLNEEVY+
Sbjct: 181 VAQGYAQVEGVNFDETFASVSRLEAIRLLLGISCIRKFKLYQMNVKSALQNGYLNEEVYV 240

Query: 241 AQPR 245
           AQP+
Sbjct: 241 AQPK 243

[Close]
BLAST of Cmc01g0022401 vs. ExPASy TrEMBL
Match: A0A5A7UQV4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005780 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 8.8e-76
Identity = 154/244 (63.11%), Postives = 182/244 (74.59%), Query Frame = 0 

Query: 1   METINVAVNDNEKSLYRRIDDDNDLPIQPSVAPKLVVADVSSVDTIVTNYSDSSKSTQKK 60
           METINV VND+ K   ++IDD+ D   + ++ P     DVS  D   TN+  S KST K+
Sbjct: 1   METINVLVNDS-KYTNKQIDDEEDEAPKVTLVPTSTSVDVSKADIETTNFDLSYKSTSKE 60

Query: 61  VMSDASEFIPSSHVQKNHPSSSIIGGPSAGITTRKKDKIDYTKMIANICYTSSIEPTSVN 120
              + +  IPSSH +K+H SSSIIG P  GIT+RKKDK+DY+KMIA++CY  +IE TS  
Sbjct: 61  ATVEGTLSIPSSHFRKSHQSSSIIGDPFTGITSRKKDKVDYSKMIADLCYALAIELTSFE 120

Query: 121 KALKDEFWINAMQGELLQFKQNNLRTLVPKPMEATIIGTKWILKSKTDERGSVIRNTTRL 180
            ALKDE+WINAMQ ELL FK+NN+ TLVPKP EA IIGTKWI K+K DE G V RN  RL
Sbjct: 121 AALKDEYWINAMQEELLPFKRNNVWTLVPKPDEANIIGTKWIFKNKIDESGCVTRNKARL 180

Query: 181 VAQGYSQKEAVDFDEIFAPVARLETIHLLLSISCVRKFKLYQMDVKSAFLNGYLNEEVYI 240
           VAQGY+Q E VDFDE FAPVARLE I LLL ISC+RKFK YQMDVK AFLNGYLNEE+Y+
Sbjct: 181 VAQGYAQIEGVDFDETFAPVARLEAICLLLGISCIRKFKFYQMDVKRAFLNGYLNEELYV 240

Query: 241 AQPR 245
           AQP+
Sbjct: 241 AQPK 243

[Close]
BLAST of Cmc01g0022401 vs. ExPASy TrEMBL
Match: A0A5A7T2Q0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00330 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.7e-74
Identity = 148/244 (60.66%), Postives = 189/244 (77.46%), Query Frame = 0 

Query: 1   METINVAVNDNEKSLYRRIDDDNDLPIQPSVAPKLVVADVSSVDTIVTNYSDSSKSTQKK 60
           METINV VND E ++ +   +D++  + P V    +         + +  +DSS + +  
Sbjct: 1   METINVVVNDFESNVNQFNIEDDETHVTPEVTSTPLDEMPKGESQLDSAKTDSSITDE-- 60

Query: 61  VMSDASEFIPSSHVQKNHPSSSIIGGPSAGITTRKKDKIDYTKMIANICYTSSIEPTSVN 120
           V+++ +  +PS++V+KNHPSSSIIG PSAGITT++K+K+DYTKMIA++CY S+IEPTSV 
Sbjct: 61  VINNETVLVPSAYVKKNHPSSSIIGDPSAGITTKRKEKVDYTKMIADLCYVSAIEPTSVE 120

Query: 121 KALKDEFWINAMQGELLQFKQNNLRTLVPKPMEATIIGTKWILKSKTDERGSVIRNTTRL 180
            A KDE+WINAMQ ELLQFK+NN+ T+VPKP  A +IGTKWI K+KTDE GS+IRN  RL
Sbjct: 121 NAFKDEYWINAMQEELLQFKRNNVWTMVPKPDGANVIGTKWIFKNKTDESGSIIRNKARL 180

Query: 181 VAQGYSQKEAVDFDEIFAPVARLETIHLLLSISCVRKFKLYQMDVKSAFLNGYLNEEVYI 240
           +AQGY+Q E VDFDE FA VARLE I LLLSISC RKFKL++MDVKSAFLNGYLNEEVY+
Sbjct: 181 IAQGYAQVEGVDFDETFALVARLEAIRLLLSISCFRKFKLFRMDVKSAFLNGYLNEEVYV 240

Query: 241 AQPR 245
           AQP+
Sbjct: 241 AQPK 242

[Close]
BLAST of Cmc01g0022401 vs. ExPASy TrEMBL
Match: A0A5D3BKX4 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00650 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 3.5e-72
Identity = 144/244 (59.02%), Postives = 182/244 (74.59%), Query Frame = 0 

Query: 1   METINVAVNDNEKSLYRRIDDDNDLPIQPSVAPKLVVADVSSVDTIVTNYSDSSKSTQKK 60
           ++TINV VND E  + +R +D+ND   + +V     + +    D        +SKS  K 
Sbjct: 100 IDTINVVVNDFE-PIAKRTNDENDEAPKETVGSPTALIEEPKADI-------NSKSISKD 159

Query: 61  VMSDASEFIPSSHVQKNHPSSSIIGGPSAGITTRKKDKIDYTKMIANICYTSSIEPTSVN 120
           V ++ +E IPS+HV+KNHPSSSIIG PS GITTRKK+K+DY KMI ++CYT +IE +S++
Sbjct: 160 VTAEVTELIPSAHVRKNHPSSSIIGNPSVGITTRKKEKVDYVKMIGDLCYTFAIEHSSID 219

Query: 121 KALKDEFWINAMQGELLQFKQNNLRTLVPKPMEATIIGTKWILKSKTDERGSVIRNTTRL 180
            ALKDE+WINAMQ ELLQF+ NN+ TLVPKP  A IIGTKW+ K+KTDE   V RN  R 
Sbjct: 220 VALKDEYWINAMQEELLQFRHNNVWTLVPKPEGANIIGTKWVFKNKTDEARYVTRNKARF 279

Query: 181 VAQGYSQKEAVDFDEIFAPVARLETIHLLLSISCVRKFKLYQMDVKSAFLNGYLNEEVYI 240
           VAQGY+Q E V+FDE FAPVARLE I LLL +SC+R+FKLYQM+VKS FL+GYLNEEVY+
Sbjct: 280 VAQGYAQVEGVNFDETFAPVARLEAIRLLLGLSCIRRFKLYQMNVKSVFLSGYLNEEVYV 335

Query: 241 AQPR 245
           AQP+
Sbjct: 340 AQPK 335

[Close]
BLAST of Cmc01g0022401 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-23
Identity = 51/136 (37.50%), Postives = 83/136 (61.03%), Query Frame = 0 

Query: 108 ICYTSSIEPTSVNKALKDEFWINAMQGELLQFKQNNLRTLVPKPMEATIIGTKWILKSKT 167
           +C   + EP++ N+A +   W  AM  E+   +  +   +   P     IG KW+ K K 
Sbjct: 78  VCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKY 137

Query: 168 DERGSVIRNTTRLVAQGYSQKEAVDFDEIFAPVARLETIHLLLSISCVRKFKLYQMDVKS 227
           +  G++ R   RLVA+GY+Q+E +DF E F+PV +L ++ L+L+IS +  F L+Q+D+ +
Sbjct: 138 NSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISN 197

Query: 228 AFLNGYLNEEVYIAQP 244
           AFLNG L+EE+Y+  P
Sbjct: 198 AFLNGDLDEEIYMKLP 213

[Close]
BLAST of Cmc01g0022401 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 86.7 bits (213), Expect = 3.1e-17
Identity = 60/174 (34.48%), Postives = 87/174 (50.00%), Query Frame = 0 

Query: 93  TRKKDKIDYTKMIANICYTSSI--EPTSVNKALKDEFWINAMQGELLQFKQNNLRTLVPK 152
           TR K  I+      ++  T++I  EP SV  ALKD  W  AMQ EL    +N    LVP 
Sbjct: 3   TRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPP 62

Query: 153 PMEATIIGTKWILKSKTDERGSVIRNTTRLVAQGYSQKEAVDFDEIFAPVARLETIHLLL 212
           P+   I+G KW+ K+K    G++ R   RLVA+G+ Q+E + F E ++PV R  TI  +L
Sbjct: 63  PVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTIL 122

Query: 213 SISCVRKFKLYQMDV--------KSAFLNGYLNEEVYIAQPRVLLIRFILSMCI 257
           +++        Q++V        K  F  G   ++       VL I FI  MC+
Sbjct: 123 NVA-------QQLEVGQSINWMFKMHFSMGIFKKKFICINLLVLRILFIHPMCV 169

The following BLAST results are available for this feature:
BLAST of Cmc01g0022401 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0035996.18.4e-8165.98gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0032884.12.1e-7663.11gag-pol polyprotein [Cucumis melo var. makuwa] >TYK09394.1 gag-pol polyprotein [... [more]
KAA0058253.11.8e-7563.11putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0037650.13.4e-7460.66gag-pol polyprotein [Cucumis melo var. makuwa] >TYK22795.1 gag-pol polyprotein [... [more]
TYJ99674.17.1e-7259.02gag-pol polyprotein [Cucumis melo var. makuwa][more]
BLAST of Cmc01g0022401 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P041464.6e-2141.88Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q94HW21.3e-2032.70Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT941.1e-1931.88Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P109782.1e-1837.12Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P925204.4e-1634.48Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of Cmc01g0022401 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T1974.1e-8165.98Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G0... [more]
A0A5D3CDX91.0e-7663.11Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold504G... [more]
A0A5A7UQV48.8e-7663.11Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5A7T2Q01.7e-7460.66Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G... [more]
A0A5D3BKX43.5e-7259.02Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G... [more]
BLAST of Cmc01g0022401 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G23160.11.3e-2337.50cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00820.13.1e-1734.48Reverse transcriptase (RNA-dependent DNA polymerase) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 142..244
e-value: 2.3E-28
score: 99.4
NoneNo IPR availablePANTHERPTHR11439:SF351CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8coord: 129..243
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 129..243

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc01g0022401.1Cmc01g0022401.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding