Cmc01g0014391 (gene) Melon (Charmono) v1.1

Overview
NameCmc01g0014391
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotransposon protein
LocationCMiso1.1chr01: 11366019 .. 11366542 (-)
RNA-Seq ExpressionCmc01g0014391
SyntenyCmc01g0014391
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCAAATGTAAAGGGTTTCCTAGCACCCTACAAAGACCAACGCTACCACTTGTAGGAATGGCGTGGCGCTGAAAATGCACCTTCAATGTCAAAAGAGGTCTTTGGAGTTTGGAGTTGAATGTACTATGTATTTGTATTGTAACCGTGGAGAAATTAATGACAATAATATGTTTGCATTTGATTTATAGCATGTCAACTACATCGAGACTACCTAAGCAAAGTTAGACGAAAGAGGAAGAGGCAGGCCTCATCGAGTTAGTAAATGTTGGTGGCTGGAGTTCGACAACGGCAACTTTCGCCTCGGGTACCTAAATTAGCTGGCGAGAATGATGACCTTCAAGATCTTGGGTTGTAACATCCATGCTTCAACGATTGATAGCCAAATAAAATTGTTGAAGAGAACGTTCTATGCGCTAGCCGAGATGTGTGGCTCAACCTGTAGTGGGTTTGGGTGGAATGATGAACAAAAGTGCATCGTCATAGAGAAAGAAGTGTTTGAGGATTGGGTCAAGGTGCGTTATTAG

mRNA sequence

CCCAAATGTAAAGGGTTTCCTAGCACCCTACAAAGACCAACGCTACCACTTGTAGGAATGGCGTGGCGCTGAAAATGCACCTTCAATGTCAAAAGAGCATGTCAACTACATCGAGACTACCTAAGCAAAGTTAGACGAAAGAGGAAGAGGCAGGCCTCATCGAGTTAGTAAATGTTGGTGGCTGGAGTTCGACAACGGCAACTTTCGCCTCGGGTACCTAAATTAGCTGGCGAGAATGATGACCTTCAAGATCTTGGGTTGTAACATCCATGCTTCAACGATTGATAGCCAAATAAAATTGTTGAAGAGAACGTTCTATGCGCTAGCCGAGATGTGTGGCTCAACCTGTAGTGGGTTTGGGTGGAATGATGAACAAAAGTGCATCGTCATAGAGAAAGAAGTGTTTGAGGATTGGGTCAAGGTGCGTTATTAG

Coding sequence (CDS)

ATGATGACCTTCAAGATCTTGGGTTGTAACATCCATGCTTCAACGATTGATAGCCAAATAAAATTGTTGAAGAGAACGTTCTATGCGCTAGCCGAGATGTGTGGCTCAACCTGTAGTGGGTTTGGGTGGAATGATGAACAAAAGTGCATCGTCATAGAGAAAGAAGTGTTTGAGGATTGGGTCAAGGTGCGTTATTAG

Protein sequence

MMTFKILGCNIHASTIDSQIKLLKRTFYALAEMCGSTCSGFGWNDEQKCIVIEKEVFEDWVKVRY
Homology
BLAST of Cmc01g0014391 vs. NCBI nr
Match: KAA0042271.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 1   MMTFKILGCNIHASTIDSQIKLLKRTFYALAEMCGSTCSGFGWNDEQKCIVIEKEVFEDW 60
           MM FKI GCNIHA TID QIKL+KR F+ALAEMCG TCS FGWNDEQKCIV EKEVF DW
Sbjct: 51  MMAFKIPGCNIHALTIDGQIKLMKRMFHALAEMCGPTCSDFGWNDEQKCIVAEKEVFYDW 110

Query: 61  VKVRY 66
           VKVRY
Sbjct: 111 VKVRY 115

BLAST of Cmc01g0014391 vs. NCBI nr
Match: TYK26918.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 3.4e-23
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 1   MMTFKILGCNIHASTIDSQIKLLKRTFYALAEMCGSTCSGFGWNDEQKCIVIEKEVFEDW 60
           MM FKI GCNIHA TIDS+IKL+KR F+ALAEMCG TCS FGWNDEQKCIV EKEVF DW
Sbjct: 51  MMAFKIPGCNIHALTIDSRIKLMKRMFHALAEMCGPTCSDFGWNDEQKCIVAEKEVFYDW 110

Query: 61  VKVRY 66
            KVRY
Sbjct: 111 AKVRY 115

BLAST of Cmc01g0014391 vs. NCBI nr
Match: KAA0026116.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 5.7e-23
Identity = 52/65 (80.00%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 1   MMTFKILGCNIHASTIDSQIKLLKRTFYALAEMCGSTCSGFGWNDEQKCIVIEKEVFEDW 60
           MM FKI GCNIHASTIDS+IKL+KR F+ALAEM G  CS FGWNDE+KCIV+EKEVF+DW
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSAFGWNDEKKCIVVEKEVFDDW 110

Query: 61  VKVRY 66
           VKVRY
Sbjct: 111 VKVRY 115

BLAST of Cmc01g0014391 vs. NCBI nr
Match: KAA0043325.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK02658.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 0

Query: 1  MMTFKILGCNIHASTIDSQIKLLKRTFYALAEMCGSTCSGFGWNDEQKCIVIEKEVFEDW 60
          MM FKI GCNIHASTIDS+IKL+KR F+ALAEM    CSGFGWNDEQKCIV+EKE F+DW
Sbjct: 29 MMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRDPMCSGFGWNDEQKCIVVEKEFFDDW 88

Query: 61 VKVRY 66
          VKVRY
Sbjct: 89 VKVRY 93

BLAST of Cmc01g0014391 vs. NCBI nr
Match: TYK15304.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-22
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1   MMTFKILGCNIHASTIDSQIKLLKRTFYALAEMCGSTCSGFGWNDEQKCIVIEKEVFEDW 60
           MM FKI GCNIHASTIDS+IKL+KR F+ALAEM G TCSGFGWNDEQKCIV EKEVF+DW
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTEKEVFDDW 110

Query: 61  VK 63
           VK
Sbjct: 111 VK 112

BLAST of Cmc01g0014391 vs. ExPASy TrEMBL
Match: A0A5A7TL11 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00550 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.6e-24
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 1   MMTFKILGCNIHASTIDSQIKLLKRTFYALAEMCGSTCSGFGWNDEQKCIVIEKEVFEDW 60
           MM FKI GCNIHA TID QIKL+KR F+ALAEMCG TCS FGWNDEQKCIV EKEVF DW
Sbjct: 51  MMAFKIPGCNIHALTIDGQIKLMKRMFHALAEMCGPTCSDFGWNDEQKCIVAEKEVFYDW 110

Query: 61  VKVRY 66
           VKVRY
Sbjct: 111 VKVRY 115

BLAST of Cmc01g0014391 vs. ExPASy TrEMBL
Match: A0A5D3DTP5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold699G00270 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-23
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 1   MMTFKILGCNIHASTIDSQIKLLKRTFYALAEMCGSTCSGFGWNDEQKCIVIEKEVFEDW 60
           MM FKI GCNIHA TIDS+IKL+KR F+ALAEMCG TCS FGWNDEQKCIV EKEVF DW
Sbjct: 51  MMAFKIPGCNIHALTIDSRIKLMKRMFHALAEMCGPTCSDFGWNDEQKCIVAEKEVFYDW 110

Query: 61  VKVRY 66
            KVRY
Sbjct: 111 AKVRY 115

BLAST of Cmc01g0014391 vs. ExPASy TrEMBL
Match: A0A5A7SJZ2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00580 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.8e-23
Identity = 52/65 (80.00%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 1   MMTFKILGCNIHASTIDSQIKLLKRTFYALAEMCGSTCSGFGWNDEQKCIVIEKEVFEDW 60
           MM FKI GCNIHASTIDS+IKL+KR F+ALAEM G  CS FGWNDE+KCIV+EKEVF+DW
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSAFGWNDEKKCIVVEKEVFDDW 110

Query: 61  VKVRY 66
           VKVRY
Sbjct: 111 VKVRY 115

BLAST of Cmc01g0014391 vs. ExPASy TrEMBL
Match: A0A5A7TPI5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00020 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.2e-23
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 0

Query: 1  MMTFKILGCNIHASTIDSQIKLLKRTFYALAEMCGSTCSGFGWNDEQKCIVIEKEVFEDW 60
          MM FKI GCNIHASTIDS+IKL+KR F+ALAEM    CSGFGWNDEQKCIV+EKE F+DW
Sbjct: 29 MMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRDPMCSGFGWNDEQKCIVVEKEFFDDW 88

Query: 61 VKVRY 66
          VKVRY
Sbjct: 89 VKVRY 93

BLAST of Cmc01g0014391 vs. ExPASy TrEMBL
Match: A0A5D3CWJ7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1706G00110 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1   MMTFKILGCNIHASTIDSQIKLLKRTFYALAEMCGSTCSGFGWNDEQKCIVIEKEVFEDW 60
           MM FKI GCNIHASTIDS+IKL+KR F+ALAEM G TCSGFGWNDEQKCIV EKEVF+DW
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTEKEVFDDW 110

Query: 61  VK 63
           VK
Sbjct: 111 VK 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0042271.11.2e-2383.08retrotransposon protein [Cucumis melo var. makuwa][more]
TYK26918.13.4e-2381.54retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0026116.15.7e-2380.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0043325.11.3e-2280.00retrotransposon protein [Cucumis melo var. makuwa] >TYK02658.1 retrotransposon p... [more]
TYK15304.12.2e-2283.87retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TL115.6e-2483.08Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DTP51.6e-2381.54Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SJZ22.8e-2380.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TPI56.2e-2380.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CWJ71.1e-2283.87Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 1..63
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc01g0014391.1Cmc01g0014391.1mRNA