Cmc01g0013101 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0013101
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr01: 9665492 .. 9666133 (-)
RNA-Seq Expression	Cmc01g0013101
Synteny	Cmc01g0013101

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCGAGCCTGTGTTATGAAGTTCTTAAGTAGTTGGGACTCTCACTTGCACTTGATGGAATTCGCTTATAATAACAGCTACCAAGCTACCATTGGTATGGCACCATTTGAGGCTCTGTATGGTAAGTGTTGTAAATCTCCTGTTTGTTGGGGCGAGGTTGGTGAGCAGAGAATGCTAGGCCCTGAGTTAGTTCAGATCACCAACGCATCCATACAGAAGATTAGAGCTCGTATGTTGACAGCACAGAGCAGACAGAAGAGTTATGTTGATGAACGGCTTAAGGATCTCAAGTTTGATGTGGGAGACATGGTATTTTTGAAGGTAGCACCTATGAAGGGTGTTCTGAGGTTCGAGAAGAAGGGGAAGCTAAGTCCGCGTTTTGTAGGGCCATTTGAGATACTGGAGCGGATTGGCCCTGTGGCTTATCGCTTGGCGTTGCCCCTATCATTTTCTGCAGTGCATGACATATTCCATATCTCCATGCTGAGGAGGTATGTTGCAGACCCGACGCATGTAGTTGACTTCGAGCCATTGCAAATTAATGAGGACTTGAGCTATGAGGAGCAACCGGTTGAGATTTTGGCAAGAGAGGTCAAGATGCTCCGTAATCAAGGAATCTCACTGGTCAAAGTTCTTTGA

mRNA sequence

ATGTTGCGAGCCTGTGTTATGAAGTTCTTAAGTAGTTGGGACTCTCACTTGCACTTGATGGAATTCGCTTATAATAACAGCTACCAAGCTACCATTGGTATGGCACCATTTGAGGCTCTGTATGGTAAGTGTTGTAAATCTCCTGTTTGTTGGGGCGAGGTTGGTGAGCAGAGAATGCTAGGCCCTGAGTTAGTTCAGATCACCAACGCATCCATACAGAAGATTAGAGCTCGTATGTTGACAGCACAGAGCAGACAGAAGAGTTATGTTGATGAACGGCTTAAGGATCTCAAGTTTGATGTGGGAGACATGGTATTTTTGAAGGTAGCACCTATGAAGGGTGTTCTGAGGTTCGAGAAGAAGGGGAAGCTAAGTCCGCGTTTTGTAGGGCCATTTGAGATACTGGAGCGGATTGGCCCTGTGGCTTATCGCTTGGCGTTGCCCCTATCATTTTCTGCAGTGCATGACATATTCCATATCTCCATGCTGAGGAGGTATGTTGCAGACCCGACGCATGTAGTTGACTTCGAGCCATTGCAAATTAATGAGGACTTGAGCTATGAGGAGCAACCGGTTGAGATTTTGGCAAGAGAGGTCAAGATGCTCCGTAATCAAGGAATCTCACTGGTCAAAGTTCTTTGA

Coding sequence (CDS)

ATGTTGCGAGCCTGTGTTATGAAGTTCTTAAGTAGTTGGGACTCTCACTTGCACTTGATGGAATTCGCTTATAATAACAGCTACCAAGCTACCATTGGTATGGCACCATTTGAGGCTCTGTATGGTAAGTGTTGTAAATCTCCTGTTTGTTGGGGCGAGGTTGGTGAGCAGAGAATGCTAGGCCCTGAGTTAGTTCAGATCACCAACGCATCCATACAGAAGATTAGAGCTCGTATGTTGACAGCACAGAGCAGACAGAAGAGTTATGTTGATGAACGGCTTAAGGATCTCAAGTTTGATGTGGGAGACATGGTATTTTTGAAGGTAGCACCTATGAAGGGTGTTCTGAGGTTCGAGAAGAAGGGGAAGCTAAGTCCGCGTTTTGTAGGGCCATTTGAGATACTGGAGCGGATTGGCCCTGTGGCTTATCGCTTGGCGTTGCCCCTATCATTTTCTGCAGTGCATGACATATTCCATATCTCCATGCTGAGGAGGTATGTTGCAGACCCGACGCATGTAGTTGACTTCGAGCCATTGCAAATTAATGAGGACTTGAGCTATGAGGAGCAACCGGTTGAGATTTTGGCAAGAGAGGTCAAGATGCTCCGTAATCAAGGAATCTCACTGGTCAAAGTTCTTTGA

Protein sequence

MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCKSPVCWGEVGEQRMLGPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDLKFDVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHDIFHISMLRRYVADPTHVVDFEPLQINEDLSYEEQPVEILAREVKMLRNQGISLVKVL

Homology

[Close]

BLAST of Cmc01g0013101 vs. NCBI nr
Match: KAA0048739.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK31596.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 424.5 bits (1090), Expect = 5.5e-115
Identity = 212/213 (99.53%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1    MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCKSPVCWGEVGEQRML 60
            MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCC+SPVCWGEVGEQRML
Sbjct: 987  MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRML 1046

Query: 61   GPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDLKFDVGDMVFLKVAPMKGVLRFEK 120
            GPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDLKFDVGDMVFLKVAPMKGVLRFEK
Sbjct: 1047 GPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDLKFDVGDMVFLKVAPMKGVLRFEK 1106

Query: 121  KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHDIFHISMLRRYVADPTHVVDFEPLQ 180
            KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHDIFHISMLRRYVADPTHVVDFEPLQ
Sbjct: 1107 KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHDIFHISMLRRYVADPTHVVDFEPLQ 1166

Query: 181  INEDLSYEEQPVEILAREVKMLRNQGISLVKVL 214
            INEDLSYEEQPVEILAREVKMLRNQGISLVKVL
Sbjct: 1167 INEDLSYEEQPVEILAREVKMLRNQGISLVKVL 1199

[Close]

BLAST of Cmc01g0013101 vs. NCBI nr
Match: KAA0035839.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 387.1 bits (993), Expect = 9.7e-104
Identity = 192/213 (90.14%), Postives = 202/213 (94.84%), Query Frame = 0


Query: 1   MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCKSPVCWGEVGEQRML 60
           MLRACV++F  SWDSHLHLMEFAYNNS QATIGMAPFEALYGKCC+SPVCWGEVGEQRML
Sbjct: 543 MLRACVLEFSGSWDSHLHLMEFAYNNSDQATIGMAPFEALYGKCCRSPVCWGEVGEQRML 602

Query: 61  GPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDLKFDVGDMVFLKVAPMKGVLRFEK 120
           GPELVQ TN +IQKIRARMLTAQSRQKSY DER KDL+FDVGDMVFLKVAPMKG LRFEK
Sbjct: 603 GPELVQTTNVAIQKIRARMLTAQSRQKSYADERRKDLEFDVGDMVFLKVAPMKGFLRFEK 662

Query: 121 KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHDIFHISMLRRYVADPTHVVDFEPLQ 180
           KGKLSPRFVGPFEILERIG VAYRLALP SFSA+HD+F++SMLRRYVADPTHVVDFEPLQ
Sbjct: 663 KGKLSPRFVGPFEILERIGLVAYRLALPPSFSALHDVFYVSMLRRYVADPTHVVDFEPLQ 722

Query: 181 INEDLSYEEQPVEILAREVKMLRNQGISLVKVL 214
           INEDLSYEEQPVEILAREVKMLRN+ ISLVKVL
Sbjct: 723 INEDLSYEEQPVEILAREVKMLRNRDISLVKVL 755

[Close]

BLAST of Cmc01g0013101 vs. NCBI nr
Match: TYK11711.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 386.0 bits (990), Expect = 2.2e-103
Identity = 190/213 (89.20%), Postives = 203/213 (95.31%), Query Frame = 0


Query: 1   MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCKSPVCWGEVGEQRML 60
           MLRACV+KFL SWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCC+SP+CWGEVGEQRML
Sbjct: 108 MLRACVLKFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPICWGEVGEQRML 167

Query: 61  GPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDLKFDVGDMVFLKVAPMKGVLRFEK 120
           G ELV+ TNA+IQKIRARMLTAQSRQKSY D R KDL+F+VGDMVFLKVAPMKGVLRFEK
Sbjct: 168 GLELVETTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEK 227

Query: 121 KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHDIFHISMLRRYVADPTHVVDFEPLQ 180
           KGKLSPRFVGPFEILER GPVAYRLALP SFSAVHD+FH+SMLRRYVADPTHVVDFEPLQ
Sbjct: 228 KGKLSPRFVGPFEILERFGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQ 287

Query: 181 INEDLSYEEQPVEILAREVKMLRNQGISLVKVL 214
           I+E+LSYEEQPVEILAREVK LR++ ISLVKVL
Sbjct: 288 ISENLSYEEQPVEILAREVKKLRSREISLVKVL 320

[Close]

BLAST of Cmc01g0013101 vs. NCBI nr
Match: KAA0039213.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 386.0 bits (990), Expect = 2.2e-103
Identity = 189/213 (88.73%), Postives = 203/213 (95.31%), Query Frame = 0


Query: 1    MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCKSPVCWGEVGEQRML 60
            MLRACV++F  SWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCC+SPVCWGEVGEQRML
Sbjct: 819  MLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRML 878

Query: 61   GPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDLKFDVGDMVFLKVAPMKGVLRFEK 120
            GPELVQ TNA+IQKIRARMLTAQSRQKSY D R KDL+F VGDMVFLKVAPMKGVLRF K
Sbjct: 879  GPELVQTTNAAIQKIRARMLTAQSRQKSYADVRHKDLEFQVGDMVFLKVAPMKGVLRFVK 938

Query: 121  KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHDIFHISMLRRYVADPTHVVDFEPLQ 180
            KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHD+FH+SMLR+YVADPTHVVDFEPLQ
Sbjct: 939  KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHDVFHVSMLRKYVADPTHVVDFEPLQ 998

Query: 181  INEDLSYEEQPVEILAREVKMLRNQGISLVKVL 214
            ++E+LSYEEQPVE+LAREVK LR++ ISLVKVL
Sbjct: 999  VSENLSYEEQPVEVLAREVKKLRSREISLVKVL 1031

[Close]

BLAST of Cmc01g0013101 vs. NCBI nr
Match: TYK18480.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 386.0 bits (990), Expect = 2.2e-103
Identity = 189/213 (88.73%), Postives = 203/213 (95.31%), Query Frame = 0


Query: 1    MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCKSPVCWGEVGEQRML 60
            MLRACV++F  SWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCC+SPVCWGEVGEQRML
Sbjct: 819  MLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRML 878

Query: 61   GPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDLKFDVGDMVFLKVAPMKGVLRFEK 120
            GPELVQ TNA+IQKIRARMLTAQSRQKSY D R KDL+F VGDMVFLKVAPMKGVLRF K
Sbjct: 879  GPELVQTTNAAIQKIRARMLTAQSRQKSYADVRHKDLEFQVGDMVFLKVAPMKGVLRFVK 938

Query: 121  KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHDIFHISMLRRYVADPTHVVDFEPLQ 180
            KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHD+FH+SMLR+YVADPTHVVDFEPLQ
Sbjct: 939  KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHDVFHVSMLRKYVADPTHVVDFEPLQ 998

Query: 181  INEDLSYEEQPVEILAREVKMLRNQGISLVKVL 214
            ++E+LSYEEQPVE+LAREVK LR++ ISLVKVL
Sbjct: 999  VSENLSYEEQPVEVLAREVKKLRSREISLVKVL 1031

[Close]

BLAST of Cmc01g0013101 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.5e-11
Identity = 51/169 (30.18%), Postives = 83/169 (49.11%), Query Frame = 0


Query: 1    MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCKSPVCWGEVGEQRM 60
            +LR       ++W  H+ L++ +YNN+  +   M PFE ++      SP+   E+     
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSD 1154

Query: 61   LGPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDL-KFDVGDMVFLKVAPMKGVLRF 120
               E  Q T    Q ++  + T   + K Y D +++++ +F  GD+V +K     G L  
Sbjct: 1155 KTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL-- 1214

Query: 121  EKKGKLSPRFVGPFEILERIGPVAYRLALPLSFSAV-HDIFHISMLRRY 167
             K  KL+P F GPF +L++ GP  Y L LP S   +    FH+S L +Y
Sbjct: 1215 HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Cmc01g0013101 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.5e-11
Identity = 51/169 (30.18%), Postives = 83/169 (49.11%), Query Frame = 0


Query: 1    MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCKSPVCWGEVGEQRM 60
            +LR       ++W  H+ L++ +YNN+  +   M PFE ++      SP+   E+     
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSD 1154

Query: 61   LGPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDL-KFDVGDMVFLKVAPMKGVLRF 120
               E  Q T    Q ++  + T   + K Y D +++++ +F  GD+V +K     G L  
Sbjct: 1155 KTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL-- 1214

Query: 121  EKKGKLSPRFVGPFEILERIGPVAYRLALPLSFSAV-HDIFHISMLRRY 167
             K  KL+P F GPF +L++ GP  Y L LP S   +    FH+S L +Y
Sbjct: 1215 HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Cmc01g0013101 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.5e-11
Identity = 51/169 (30.18%), Postives = 83/169 (49.11%), Query Frame = 0


Query: 1    MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCKSPVCWGEVGEQRM 60
            +LR       ++W  H+ L++ +YNN+  +   M PFE ++      SP+   E+     
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSD 1154

Query: 61   LGPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDL-KFDVGDMVFLKVAPMKGVLRF 120
               E  Q T    Q ++  + T   + K Y D +++++ +F  GD+V +K     G L  
Sbjct: 1155 KTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL-- 1214

Query: 121  EKKGKLSPRFVGPFEILERIGPVAYRLALPLSFSAV-HDIFHISMLRRY 167
             K  KL+P F GPF +L++ GP  Y L LP S   +    FH+S L +Y
Sbjct: 1215 HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Cmc01g0013101 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.5e-11
Identity = 51/169 (30.18%), Postives = 83/169 (49.11%), Query Frame = 0


Query: 1    MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCKSPVCWGEVGEQRM 60
            +LR       ++W  H+ L++ +YNN+  +   M PFE ++      SP+   E+     
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSD 1154

Query: 61   LGPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDL-KFDVGDMVFLKVAPMKGVLRF 120
               E  Q T    Q ++  + T   + K Y D +++++ +F  GD+V +K     G L  
Sbjct: 1155 KTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL-- 1214

Query: 121  EKKGKLSPRFVGPFEILERIGPVAYRLALPLSFSAV-HDIFHISMLRRY 167
             K  KL+P F GPF +L++ GP  Y L LP S   +    FH+S L +Y
Sbjct: 1215 HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Cmc01g0013101 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.5e-11
Identity = 51/169 (30.18%), Postives = 83/169 (49.11%), Query Frame = 0


Query: 1    MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCKSPVCWGEVGEQRM 60
            +LR       ++W  H+ L++ +YNN+  +   M PFE ++      SP+   E+     
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSD 1154

Query: 61   LGPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDL-KFDVGDMVFLKVAPMKGVLRF 120
               E  Q T    Q ++  + T   + K Y D +++++ +F  GD+V +K     G L  
Sbjct: 1155 KTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL-- 1214

Query: 121  EKKGKLSPRFVGPFEILERIGPVAYRLALPLSFSAV-HDIFHISMLRRY 167
             K  KL+P F GPF +L++ GP  Y L LP S   +    FH+S L +Y
Sbjct: 1215 HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Cmc01g0013101 vs. ExPASy TrEMBL
Match: A0A5D3E7D9 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G001000 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 2.7e-115
Identity = 212/213 (99.53%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1    MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCKSPVCWGEVGEQRML 60
            MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCC+SPVCWGEVGEQRML
Sbjct: 987  MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRML 1046

Query: 61   GPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDLKFDVGDMVFLKVAPMKGVLRFEK 120
            GPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDLKFDVGDMVFLKVAPMKGVLRFEK
Sbjct: 1047 GPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDLKFDVGDMVFLKVAPMKGVLRFEK 1106

Query: 121  KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHDIFHISMLRRYVADPTHVVDFEPLQ 180
            KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHDIFHISMLRRYVADPTHVVDFEPLQ
Sbjct: 1107 KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHDIFHISMLRRYVADPTHVVDFEPLQ 1166

Query: 181  INEDLSYEEQPVEILAREVKMLRNQGISLVKVL 214
            INEDLSYEEQPVEILAREVKMLRNQGISLVKVL
Sbjct: 1167 INEDLSYEEQPVEILAREVKMLRNQGISLVKVL 1199

[Close]

BLAST of Cmc01g0013101 vs. ExPASy TrEMBL
Match: A0A5A7T370 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G001410 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 4.7e-104
Identity = 192/213 (90.14%), Postives = 202/213 (94.84%), Query Frame = 0


Query: 1   MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCKSPVCWGEVGEQRML 60
           MLRACV++F  SWDSHLHLMEFAYNNS QATIGMAPFEALYGKCC+SPVCWGEVGEQRML
Sbjct: 543 MLRACVLEFSGSWDSHLHLMEFAYNNSDQATIGMAPFEALYGKCCRSPVCWGEVGEQRML 602

Query: 61  GPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDLKFDVGDMVFLKVAPMKGVLRFEK 120
           GPELVQ TN +IQKIRARMLTAQSRQKSY DER KDL+FDVGDMVFLKVAPMKG LRFEK
Sbjct: 603 GPELVQTTNVAIQKIRARMLTAQSRQKSYADERRKDLEFDVGDMVFLKVAPMKGFLRFEK 662

Query: 121 KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHDIFHISMLRRYVADPTHVVDFEPLQ 180
           KGKLSPRFVGPFEILERIG VAYRLALP SFSA+HD+F++SMLRRYVADPTHVVDFEPLQ
Sbjct: 663 KGKLSPRFVGPFEILERIGLVAYRLALPPSFSALHDVFYVSMLRRYVADPTHVVDFEPLQ 722

Query: 181 INEDLSYEEQPVEILAREVKMLRNQGISLVKVL 214
           INEDLSYEEQPVEILAREVKMLRN+ ISLVKVL
Sbjct: 723 INEDLSYEEQPVEILAREVKMLRNRDISLVKVL 755

[Close]

BLAST of Cmc01g0013101 vs. ExPASy TrEMBL
Match: A0A5D3D4M7 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00520 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 1.0e-103
Identity = 189/213 (88.73%), Postives = 203/213 (95.31%), Query Frame = 0


Query: 1    MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCKSPVCWGEVGEQRML 60
            MLRACV++F  SWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCC+SPVCWGEVGEQRML
Sbjct: 819  MLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRML 878

Query: 61   GPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDLKFDVGDMVFLKVAPMKGVLRFEK 120
            GPELVQ TNA+IQKIRARMLTAQSRQKSY D R KDL+F VGDMVFLKVAPMKGVLRF K
Sbjct: 879  GPELVQTTNAAIQKIRARMLTAQSRQKSYADVRHKDLEFQVGDMVFLKVAPMKGVLRFVK 938

Query: 121  KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHDIFHISMLRRYVADPTHVVDFEPLQ 180
            KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHD+FH+SMLR+YVADPTHVVDFEPLQ
Sbjct: 939  KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHDVFHVSMLRKYVADPTHVVDFEPLQ 998

Query: 181  INEDLSYEEQPVEILAREVKMLRNQGISLVKVL 214
            ++E+LSYEEQPVE+LAREVK LR++ ISLVKVL
Sbjct: 999  VSENLSYEEQPVEVLAREVKKLRSREISLVKVL 1031

[Close]

BLAST of Cmc01g0013101 vs. ExPASy TrEMBL
Match: A0A5A7T8B1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G001330 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 1.0e-103
Identity = 189/213 (88.73%), Postives = 203/213 (95.31%), Query Frame = 0


Query: 1    MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCKSPVCWGEVGEQRML 60
            MLRACV++F  SWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCC+SPVCWGEVGEQRML
Sbjct: 819  MLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRML 878

Query: 61   GPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDLKFDVGDMVFLKVAPMKGVLRFEK 120
            GPELVQ TNA+IQKIRARMLTAQSRQKSY D R KDL+F VGDMVFLKVAPMKGVLRF K
Sbjct: 879  GPELVQTTNAAIQKIRARMLTAQSRQKSYADVRHKDLEFQVGDMVFLKVAPMKGVLRFVK 938

Query: 121  KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHDIFHISMLRRYVADPTHVVDFEPLQ 180
            KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHD+FH+SMLR+YVADPTHVVDFEPLQ
Sbjct: 939  KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHDVFHVSMLRKYVADPTHVVDFEPLQ 998

Query: 181  INEDLSYEEQPVEILAREVKMLRNQGISLVKVL 214
            ++E+LSYEEQPVE+LAREVK LR++ ISLVKVL
Sbjct: 999  VSENLSYEEQPVEVLAREVKKLRSREISLVKVL 1031

[Close]

BLAST of Cmc01g0013101 vs. ExPASy TrEMBL
Match: A0A5D3CIQ3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00210 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 1.0e-103
Identity = 190/213 (89.20%), Postives = 203/213 (95.31%), Query Frame = 0


Query: 1   MLRACVMKFLSSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCKSPVCWGEVGEQRML 60
           MLRACV+KFL SWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCC+SP+CWGEVGEQRML
Sbjct: 108 MLRACVLKFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPICWGEVGEQRML 167

Query: 61  GPELVQITNASIQKIRARMLTAQSRQKSYVDERLKDLKFDVGDMVFLKVAPMKGVLRFEK 120
           G ELV+ TNA+IQKIRARMLTAQSRQKSY D R KDL+F+VGDMVFLKVAPMKGVLRFEK
Sbjct: 168 GLELVETTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEK 227

Query: 121 KGKLSPRFVGPFEILERIGPVAYRLALPLSFSAVHDIFHISMLRRYVADPTHVVDFEPLQ 180
           KGKLSPRFVGPFEILER GPVAYRLALP SFSAVHD+FH+SMLRRYVADPTHVVDFEPLQ
Sbjct: 228 KGKLSPRFVGPFEILERFGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQ 287

Query: 181 INEDLSYEEQPVEILAREVKMLRNQGISLVKVL 214
           I+E+LSYEEQPVEILAREVK LR++ ISLVKVL
Sbjct: 288 ISENLSYEEQPVEILAREVKKLRSREISLVKVL 320

The following BLAST results are available for this feature:

BLAST of Cmc01g0013101 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048739.1	5.5e-115	99.53	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK31596.1 D...	[more]
KAA0035839.1	9.7e-104	90.14	pol protein [Cucumis melo var. makuwa]	[more]
TYK11711.1	2.2e-103	89.20	pol protein [Cucumis melo var. makuwa]	[more]
KAA0039213.1	2.2e-103	88.73	pol protein [Cucumis melo var. makuwa]	[more]
TYK18480.1	2.2e-103	88.73	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0013101 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	3.5e-11	30.18	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	3.5e-11	30.18	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	3.5e-11	30.18	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	3.5e-11	30.18	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	3.5e-11	30.18	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc01g0013101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E7D9	2.7e-115	99.53	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7T370	4.7e-104	90.14	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G001410 P...	[more]
A0A5D3D4M7	1.0e-103	88.73	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00520 PE...	[more]
A0A5A7T8B1	1.0e-103	88.73	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G001330 P...	[more]
A0A5D3CIQ3	1.0e-103	89.20	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00210 PE...	[more]

BLAST of Cmc01g0013101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..84 e-value: 2.4E-8 score: 35.5
None	No IPR available	PANTHER	PTHR46148:SF18	IPP TRANSFERASE	coord: 1..202
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 1..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0013101.1	Cmc01g0013101.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding