Cmc01g0013071 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0013071
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr01: 9556957 .. 9558128 (-)
RNA-Seq Expression	Cmc01g0013071
Synteny	Cmc01g0013071

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGCCAGCAAACTGCTCAGTCAGGGTACTTGGAGTATCTTAGCGAGTGTGGTGGATACTAGAGAGGTCGATGTATCCCTGTCATCAGAACCAGTGGTGAGGGACTATCCGGATGTCTTTCCTAAAGAACTTCCAAGGTTACCTCCTCACAGAGAGGTTGAGTTTGCCATAGAGCTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCATACAGAATGGCCCCAGAAGAGTTGAAAGAACTGAACGTGCAGTTACAGGAATTGCTTAATAAGGGCTTCATTCGACCGAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCAATGCGCCTATGCATTGACTATAGGGAGTTGAACAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTGTTTGACCAGTTACATGGAGCTACAGTGTTCTCTAAGTTTGATCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACGACCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGGTTGACTAATGCTCCGGCAGTGTTTATGGACTTGATGAATAGAGTTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATCTTGATATATTCCAAGACGGAGGCCGAGCATGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGGGATAATAAACTGTATGCAAAGTTCTCGAAATGTGAGTTTTGGCTGAAGCTGGTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCTGAAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGACTCGACCTTCCACAGTCAGTAAGGTTCGTAACTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTTCCATATAGCTACTCCTCTTACTCAGTTGACCAGGAAAGAAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGATAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTGCACCGGTTCTTACTGTACCGGATGGTTCAGGCAGCTTTGTGATTTATAGTGATGCTTCCAAAAAAGGTTTGGGTTGTGTATTGATGCAGCAAGGTAAGGTAGTAGCTTATGCTTCGCGCAGTTGA

mRNA sequence

ATGAGGGCCAGCAAACTGCTCAGTCAGGGTACTTGGAGTATCTTAGCGAGTGTGGTGGATACTAGAGAGGTCGATGTATCCCTGTCATCAGAACCAGTGGTGAGGGACTATCCGGATGTCTTTCCTAAAGAACTTCCAAGGTTACCTCCTCACAGAGAGGTTGAGTTTGCCATAGAGCTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCATACAGAATGGCCCCAGAAGAGTTGAAAGAACTGAACGTGCAGTTACAGGAATTGCTTAATAAGGGCTTCATTCGACCGAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCAATGCGCCTATGCATTGACTATAGGGAGTTGAACAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTGTTTGACCAGTTACATGGAGCTACAGTGTTCTCTAAGTTTGATCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACGACCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGGTTGACTAATGCTCCGGCAGTGTTTATGGACTTGATGAATAGAGCCGAGCATGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGGGATAATAAACTGTATGCAAAGTTCTCGAAATGTGAGTTTTGGCTGAAGCTGGTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCTGAAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGACTCGACCTTCCACAGTCAGTAAGGTTCGTAACTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTTCCATATAGCTACTCCTCTTACTCAGTTGACCAGGAAAGAAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGATAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTGCACCGGTTCTTACTGTACCGGATGGTTCAGGCAGCTTTGTGATTTATAGTGATGCTTCCAAAAAAGGTTTGGGTTGTGTATTGATGCAGCAAGGTAAGGTAGTAGCTTATGCTTCGCGCAGTTGA

Coding sequence (CDS)

ATGAGGGCCAGCAAACTGCTCAGTCAGGGTACTTGGAGTATCTTAGCGAGTGTGGTGGATACTAGAGAGGTCGATGTATCCCTGTCATCAGAACCAGTGGTGAGGGACTATCCGGATGTCTTTCCTAAAGAACTTCCAAGGTTACCTCCTCACAGAGAGGTTGAGTTTGCCATAGAGCTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCATACAGAATGGCCCCAGAAGAGTTGAAAGAACTGAACGTGCAGTTACAGGAATTGCTTAATAAGGGCTTCATTCGACCGAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCAATGCGCCTATGCATTGACTATAGGGAGTTGAACAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTGTTTGACCAGTTACATGGAGCTACAGTGTTCTCTAAGTTTGATCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACGACCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGGTTGACTAATGCTCCGGCAGTGTTTATGGACTTGATGAATAGAGCCGAGCATGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGGGATAATAAACTGTATGCAAAGTTCTCGAAATGTGAGTTTTGGCTGAAGCTGGTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCTGAAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGACTCGACCTTCCACAGTCAGTAAGGTTCGTAACTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTTCCATATAGCTACTCCTCTTACTCAGTTGACCAGGAAAGAAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGATAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTGCACCGGTTCTTACTGTACCGGATGGTTCAGGCAGCTTTGTGATTTATAGTGATGCTTCCAAAAAAGGTTTGGGTTGTGTATTGATGCAGCAAGGTAAGGTAGTAGCTTATGCTTCGCGCAGTTGA

Protein sequence

MRASKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPKELPRLPPHREVEFAIELEPGTVPISRAPYRMAPEELKELNVQLQELLNKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLHGATVFSKFDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKLVSFLGHVVSKAEVSVDPAKIEAVTSWTRPSTVSKVRNFLGLAGYYRRFVENFFHIATPLTQLTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRS

Homology

[Close]

BLAST of Cmc01g0013071 vs. NCBI nr
Match: KAA0047433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 685.3 bits (1767), Expect = 3.0e-193
Identity = 346/389 (88.95%), Postives = 352/389 (90.49%), Query Frame = 0


Query: 1    MRASKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPKELPRLPPHREVEFAIEL 60
            +RASKLLSQGTW ILASVVDTREVDVSLSSEPVVRDYPDVFP+ELP LPPHREVEFAIEL
Sbjct: 990  IRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIEL 1049

Query: 61   EPGTVPISRAPYRMAPEELKELNVQLQELLNKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
            EPGTVPISRAPYRMAP ELKEL VQLQELL+KGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 1050 EPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 1109

Query: 121  DYRELNKVTVKNRYPLPRIDDLFDQLHGATVFSKFDLRSGYHQLRIKDGDVPKTTFRSRY 180
            DYRELNKVTVKNRYPLPRIDDLFDQL GATVFSK DLRSGYHQLRIKDGDVPKT FRSRY
Sbjct: 1110 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRY 1169

Query: 181  GHYEFIVMSFGLTNAPAVFMDLMNR------------------------AEHEEHLRMVL 240
            GHYEFIVMSFGLTNAPAVFMDLMNR                        AEHEEHLR+VL
Sbjct: 1170 GHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVL 1229

Query: 241  QTLRDNKLYAKFSKCEFWLKLVSFLGHVVSKAEVSVDPAKIEAVTSWTRPSTVSKVRNFL 300
            QTLRDNKLYAKFSKCEFWLK VSFLGHVVSKA VSVDPAKIEAVT WTRPSTVS+VR+FL
Sbjct: 1230 QTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFL 1289

Query: 301  GLAGYYRRFVENFFHIATPLTQLTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG 360
            GLAGYYRRFVENF  IATPLTQLTRK APFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG
Sbjct: 1290 GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG 1349

Query: 361  SFVIYSDASKKGLGCVLMQQGKVVAYASR 366
            SFVIYSDASKKGLGCVLMQQGKVVAYASR
Sbjct: 1350 SFVIYSDASKKGLGCVLMQQGKVVAYASR 1378

[Close]

BLAST of Cmc01g0013071 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 682.2 bits (1759), Expect = 2.5e-192
Identity = 345/389 (88.69%), Postives = 350/389 (89.97%), Query Frame = 0


Query: 1   MRASKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPKELPRLPPHREVEFAIEL 60
           +RASKLLSQGTW ILASVVDTRE DVSLSSEPVVRDYPDVFP+ELP LPPHREVEFAIEL
Sbjct: 507 IRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIEL 566

Query: 61  EPGTVPISRAPYRMAPEELKELNVQLQELLNKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
           EPGTVPISRAPYRMAP ELKEL VQLQELL+KGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 567 EPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 626

Query: 121 DYRELNKVTVKNRYPLPRIDDLFDQLHGATVFSKFDLRSGYHQLRIKDGDVPKTTFRSRY 180
           DYRELNKVTVKNRYPLPRIDDLFDQL GATVFSK DLRSGYHQLRIKD DVPKT FRSRY
Sbjct: 627 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRY 686

Query: 181 GHYEFIVMSFGLTNAPAVFMDLMNR------------------------AEHEEHLRMVL 240
           GHYEFIVMSFGLTNAPAVFMDLMNR                        AEHEEHLRMVL
Sbjct: 687 GHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL 746

Query: 241 QTLRDNKLYAKFSKCEFWLKLVSFLGHVVSKAEVSVDPAKIEAVTSWTRPSTVSKVRNFL 300
           QTLRDNKLYAKFSKCEFWLK VSFLGHVVSKA VSVDPAKIEAVT WTRPSTVS+VR+FL
Sbjct: 747 QTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFL 806

Query: 301 GLAGYYRRFVENFFHIATPLTQLTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG 360
           GLAGYYRRFVENF  IATPLTQLTRK APFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG
Sbjct: 807 GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG 866

Query: 361 SFVIYSDASKKGLGCVLMQQGKVVAYASR 366
           SFVIYSDASKKGLGCVLMQQGKVVAYASR
Sbjct: 867 SFVIYSDASKKGLGCVLMQQGKVVAYASR 895

[Close]

BLAST of Cmc01g0013071 vs. NCBI nr
Match: KAA0040188.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 681.0 bits (1756), Expect = 5.6e-192
Identity = 345/389 (88.69%), Postives = 351/389 (90.23%), Query Frame = 0


Query: 1    MRASKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPKELPRLPPHREVEFAIEL 60
            +RASKLLSQGTW ILASVVDTREVDVSLSSEPVVRDYPDVFP+ELP LPPHREVEFAIEL
Sbjct: 632  IRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIEL 691

Query: 61   EPGTVPISRAPYRMAPEELKELNVQLQELLNKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
            EPGTVPISRAPYRMAP ELKEL VQLQELL+KGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 692  EPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 751

Query: 121  DYRELNKVTVKNRYPLPRIDDLFDQLHGATVFSKFDLRSGYHQLRIKDGDVPKTTFRSRY 180
            DYRELNKVTVKNRYPLPRIDDLFDQL GATVFSK DLRSGYHQLRIKDGDVPKT FRSRY
Sbjct: 752  DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRY 811

Query: 181  GHYEFIVMSFGLTNAPAVFMDLMNR------------------------AEHEEHLRMVL 240
            GHYEFIVMSFGLTNAPAVFMDLMNR                        AEHEEHLR+VL
Sbjct: 812  GHYEFIVMSFGLTNAPAVFMDLMNRVFKEFLDTFVIVFIDDILIYSKMEAEHEEHLRIVL 871

Query: 241  QTLRDNKLYAKFSKCEFWLKLVSFLGHVVSKAEVSVDPAKIEAVTSWTRPSTVSKVRNFL 300
            QTLRDNKLYAKFSKCEFWLK VSFLGHVVSKA VSVDPAKIEAVT WTRPSTVS+VR+FL
Sbjct: 872  QTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFL 931

Query: 301  GLAGYYRRFVENFFHIATPLTQLTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG 360
            GLAGYYRRFVENF  IATPLTQLTRK APFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG
Sbjct: 932  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG 991

Query: 361  SFVIYSDASKKGLGCVLMQQGKVVAYASR 366
            SFVIYSDASKKGLG VLMQQGKVVAYASR
Sbjct: 992  SFVIYSDASKKGLGFVLMQQGKVVAYASR 1020

[Close]

BLAST of Cmc01g0013071 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 679.9 bits (1753), Expect = 1.2e-191
Identity = 344/389 (88.43%), Postives = 349/389 (89.72%), Query Frame = 0


Query: 1    MRASKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPKELPRLPPHREVEFAIEL 60
            +RASKLLSQGTW ILASVVDTRE DVSLSSEPVVRDYPDVFP+ELP LPPHREVEFAIEL
Sbjct: 761  IRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIEL 820

Query: 61   EPGTVPISRAPYRMAPEELKELNVQLQELLNKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
            EPGTVPISRAPYRMAP ELKEL VQLQELL+KGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 821  EPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 880

Query: 121  DYRELNKVTVKNRYPLPRIDDLFDQLHGATVFSKFDLRSGYHQLRIKDGDVPKTTFRSRY 180
            DYRELNKVTVKNRYPLPRIDDLFDQL GATVFSK DLRSGYHQLRIKD DVPKT FRSRY
Sbjct: 881  DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRY 940

Query: 181  GHYEFIVMSFGLTNAPAVFMDLMNR------------------------AEHEEHLRMVL 240
            GHYEFIVMSFGLTNAPAVFMDLMNR                        AEHEEHLRMVL
Sbjct: 941  GHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL 1000

Query: 241  QTLRDNKLYAKFSKCEFWLKLVSFLGHVVSKAEVSVDPAKIEAVTSWTRPSTVSKVRNFL 300
            QTLRDNKLYAKFSKCEFWLK VSFLGHVVSKA VSVDPAKIEAVT WTRPSTVS+VR+FL
Sbjct: 1001 QTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFL 1060

Query: 301  GLAGYYRRFVENFFHIATPLTQLTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG 360
            GLAGYYRRFVENF  IATPLTQLTRK APFVWSKACEDSFQ LKQKLVTAPVLTVPDGSG
Sbjct: 1061 GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSG 1120

Query: 361  SFVIYSDASKKGLGCVLMQQGKVVAYASR 366
            SFVIYSDASKKGLGCVLMQQGKVVAYASR
Sbjct: 1121 SFVIYSDASKKGLGCVLMQQGKVVAYASR 1149

[Close]

BLAST of Cmc01g0013071 vs. NCBI nr
Match: KAA0036666.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 679.9 bits (1753), Expect = 1.2e-191
Identity = 344/389 (88.43%), Postives = 351/389 (90.23%), Query Frame = 0


Query: 1    MRASKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPKELPRLPPHREVEFAIEL 60
            +RASKLLSQGTW ILASVVDTREVDVSLSSEPVVRDYPDVFP+ELP LPPHREVEFAIEL
Sbjct: 715  IRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIEL 774

Query: 61   EPGTVPISRAPYRMAPEELKELNVQLQELLNKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
            EPGTVPISRAPYRMAP ELKEL VQLQELL+KGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 775  EPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 834

Query: 121  DYRELNKVTVKNRYPLPRIDDLFDQLHGATVFSKFDLRSGYHQLRIKDGDVPKTTFRSRY 180
            DYRELNKVTVKN+YPLPRIDDLFDQLHGATVFSK DLR GYHQLRIKDGDVPKT FRSRY
Sbjct: 835  DYRELNKVTVKNKYPLPRIDDLFDQLHGATVFSKIDLRLGYHQLRIKDGDVPKTAFRSRY 894

Query: 181  GHYEFIVMSFGLTNAPAVFMDLMNR------------------------AEHEEHLRMVL 240
            GHYEFIVMSFGLTNAPAVFMDLMNR                        AEHEEHLR+VL
Sbjct: 895  GHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYFKTEAEHEEHLRIVL 954

Query: 241  QTLRDNKLYAKFSKCEFWLKLVSFLGHVVSKAEVSVDPAKIEAVTSWTRPSTVSKVRNFL 300
            QTLRDNKLYAKFSKCEFWLK VSFLGHVVSKA VSVDPAKIEAVT  TRPSTVS+VR+FL
Sbjct: 955  QTLRDNKLYAKFSKCEFWLKPVSFLGHVVSKAGVSVDPAKIEAVTGSTRPSTVSEVRSFL 1014

Query: 301  GLAGYYRRFVENFFHIATPLTQLTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG 360
            GLAGYYRRFVENF  IATPLTQLTRK APFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG
Sbjct: 1015 GLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG 1074

Query: 361  SFVIYSDASKKGLGCVLMQQGKVVAYASR 366
            SFVIYSDASKKGLGCVLMQQGKVVAYASR
Sbjct: 1075 SFVIYSDASKKGLGCVLMQQGKVVAYASR 1103

[Close]

BLAST of Cmc01g0013071 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 7.1e-57
Identity = 116/331 (35.05%), Postives = 178/331 (53.78%), Query Frame = 0


Query: 66  PISRAPYRMAPEELKELNVQLQELLNKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCI 125
           PI    Y +A     E+  Q+QE+LN+G IR S SP+ +P   V KK         R+ I
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265

Query: 126 DYRELNKVTVKNRYPLPRIDDLFDQLHGATVFSKFDLRSGYHQLRIKDGDVPKTTFRSRY 185
           DYR+LN++T+ +RYP+P +D++  +L     F+  DL  G+HQ+ + +  + KT F ++ 
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKS 325

Query: 186 GHYEFIVMSFGLTNAPAVFMDLMNR------------------------AEHEEHLRMVL 245
           GHYE++ M FGL NAPA F   MN                          EH   +++V 
Sbjct: 326 GHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVF 385

Query: 246 QTLRDNKLYAKFSKCEFWLKLVSFLGHVVSKAEVSVDPAKIEAVTSWTRPSTVSKVRNFL 305
             L D  L  +  KCEF  K  +FLGH+V+   +  +P K++A+ S+  P+   ++R FL
Sbjct: 386 TKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFL 445

Query: 306 GLAGYYRRFVENFFHIATPLTQLTRKEAPFVWSK-ACEDSFQNLKQKLVTAPVLTVPDGS 365
           GL GYYR+F+ N+  IA P+T   +K       K    ++F+ LK  ++  P+L +PD  
Sbjct: 446 GLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFE 505

Query: 366 GSFVIYSDASKKGLGCVLMQQGKVVAYASRS 367
             FV+ +DAS   LG VL Q G  +++ SR+
Sbjct: 506 KKFVLTTDASNLALGAVLSQNGHPISFISRT 536

[Close]

BLAST of Cmc01g0013071 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.0e-55
Identity = 125/364 (34.34%), Postives = 195/364 (53.57%), Query Frame = 0


Query: 33  VVRDYPDVFPKELPRLPPHREVEFAIELEPGTVPISRAPYRMAPEELKELNVQLQELLNK 92
           +++ Y D+   E  +L    + +  I  +      S+  Y  A E+  E+  Q+Q++LN+
Sbjct: 176 LLQKYHDIQYHEGDKLTFTNQTKHTINTKHNLPLYSKYSYPQAYEQ--EVESQIQDMLNQ 235

Query: 93  GFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLH 152
           G IR S SP+ +P+  V KK+D S     R+ IDYR+LN++TV +R+P+P +D++  +L 
Sbjct: 236 GIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLG 295

Query: 153 GATVFSKFDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRA- 212
               F+  DL  G+HQ+ +    V KT F +++GHYE++ M FGL NAPA F   MN   
Sbjct: 296 RCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDIL 355

Query: 213 -----------------------EHEEHLRMVLQTLRDNKLYAKFSKCEFWLKLVSFLGH 272
                                  EH + L +V + L    L  +  KCEF  +  +FLGH
Sbjct: 356 RPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGH 415

Query: 273 VVSKAEVSVDPAKIEAVTSWTRPSTVSKVRNFLGLAGYYRRFVENFFHIATPLTQLTRKE 332
           V++   +  +P KIEA+  +  P+   +++ FLGL GYYR+F+ NF  IA P+T+  +K 
Sbjct: 416 VLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKN 475

Query: 333 APFVWSKACEDS-FQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAY 367
                +    DS F+ LK  +   P+L VPD +  F + +DAS   LG VL Q G  ++Y
Sbjct: 476 MKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSY 535

[Close]

BLAST of Cmc01g0013071 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 216.1 bits (549), Expect = 6.7e-55
Identity = 132/404 (32.67%), Postives = 207/404 (51.24%), Query Frame = 0


Query: 3   ASKLLSQGTWSILASVVDTREVDVSLSSEP---------VVRDYPDVFPKELPRLPP--- 62
           AS L   G +S + S + + E + +  S           + + Y ++   +LP  P    
Sbjct: 547 ASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLPPRPADIN 606

Query: 63  HREVEFAIELEPGTVPISRAPYRMAPEELKELNVQLQELLNKGFIRPSVSPWGAPVLFVK 122
           +  V+  IE++PG       PY +  +  +E+N  +Q+LL+  FI PS SP  +PV+ V 
Sbjct: 607 NIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVP 666

Query: 123 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLHGATVFSKFDLRSGYHQLRIKDGD 182
           KKDG+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+  DL SGYHQ+ ++  D
Sbjct: 667 KKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKD 726

Query: 183 VPKTTFRSRYGHYEFIVMSFGLTNAPAVFMDLM----------------------NRAEH 242
             KT F +  G YE+ VM FGL NAP+ F   M                      +  EH
Sbjct: 727 RYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSESPEEH 786

Query: 243 EEHLRMVLQTLRDNKLYAKFSKCEFWLKLVSFLGHVVSKAEVSVDPAKIEAVTSWTRPST 302
            +HL  VL+ L++  L  K  KC+F  +   FLG+ +   +++    K  A+  +  P T
Sbjct: 787 WKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKT 846

Query: 303 VSKVRNFLGLAGYYRRFVENFFHIATPLTQLTRKEAPFVWSKACEDSFQNLKQKLVTAPV 362
           V + + FLG+  YYRRF+ N   IA P+      ++   W++  + + + LK  L  +PV
Sbjct: 847 VKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQ--WTEKQDKAIEKLKAALCNSPV 906

Query: 363 LTVPDGSGSFVIYSDASKKGLGCVLMQQGK------VVAYASRS 367
           L   +   ++ + +DASK G+G VL +         VV Y S+S
Sbjct: 907 LVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKS 948

[Close]

BLAST of Cmc01g0013071 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 215.7 bits (548), Expect = 8.7e-55
Identity = 132/404 (32.67%), Postives = 206/404 (50.99%), Query Frame = 0


Query: 3   ASKLLSQGTWSILASVVDTREVDVSLSSEP---------VVRDYPDVFPKELPRLPP--- 62
           AS L   G +S + S + + E + +  S           + + Y ++   +LP  P    
Sbjct: 521 ASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLPPRPADIN 580

Query: 63  HREVEFAIELEPGTVPISRAPYRMAPEELKELNVQLQELLNKGFIRPSVSPWGAPVLFVK 122
           +  V+  IE++PG       PY +  +  +E+N  +Q+LL+  FI PS SP  +PV+ V 
Sbjct: 581 NIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVP 640

Query: 123 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLHGATVFSKFDLRSGYHQLRIKDGD 182
           KKDG+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+  DL SGYHQ+ ++  D
Sbjct: 641 KKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKD 700

Query: 183 VPKTTFRSRYGHYEFIVMSFGLTNAPAVFMDLM----------------------NRAEH 242
             KT F +  G YE+ VM FGL NAP+ F   M                      +  EH
Sbjct: 701 RYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSESPEEH 760

Query: 243 EEHLRMVLQTLRDNKLYAKFSKCEFWLKLVSFLGHVVSKAEVSVDPAKIEAVTSWTRPST 302
            +HL  VL+ L++  L  K  KC+F  +   FLG+ +   +++    K  A+  +  P T
Sbjct: 761 WKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKT 820

Query: 303 VSKVRNFLGLAGYYRRFVENFFHIATPLTQLTRKEAPFVWSKACEDSFQNLKQKLVTAPV 362
           V + + FLG+  YYRRF+ N   IA P+      ++   W++  + +   LK  L  +PV
Sbjct: 821 VKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQ--WTEKQDKAIDKLKDALCNSPV 880

Query: 363 LTVPDGSGSFVIYSDASKKGLGCVLMQQGK------VVAYASRS 367
           L   +   ++ + +DASK G+G VL +         VV Y S+S
Sbjct: 881 LVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKS 922

[Close]

BLAST of Cmc01g0013071 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 6.9e-52
Identity = 124/380 (32.63%), Postives = 187/380 (49.21%), Query Frame = 0


Query: 35  RDYPDVFPKELPRLPPHREVEFAIELEPGTV--------------PISRAPYRMAPEELK 94
           +++P++F  +L  +       FA+E EP TV              P+    YR    +++
Sbjct: 269 KNFPELFKSQLENICSEYIDIFALESEPITVNNLYKQQLRLKDDEPVYTKNYRSPHSQVE 328

Query: 95  ELNVQLQELLNKGFIRPSVSPWGAPVLFVKKKDG------SMRLCIDYRELNKVTVKNRY 154
           E+  Q+Q+L+    + PSVS + +P+L V KK          RL IDYR++NK  + +++
Sbjct: 329 EIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKF 388

Query: 155 PLPRIDDLFDQLHGATVFSKFDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFIVMSFGLTN 214
           PLPRIDD+ DQL  A  FS  DL SG+HQ+ + +G    T+F +  G Y F  + FGL  
Sbjct: 389 PLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKI 448

Query: 215 APAVFMDLMNRAE--------------------HEEH----LRMVLQTLRDNKLYAKFSK 274
           AP  F  +M  A                      E+H    L  V    R+  L     K
Sbjct: 449 APNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEK 508

Query: 275 CEFWLKLVSFLGHVVSKAEVSVDPAKIEAVTSWTRPSTVSKVRNFLGLAGYYRRFVENFF 334
           C F++  V+FLGH  +   +  D  K + + ++  P      R F+    YYRRF++NF 
Sbjct: 509 CSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFA 568

Query: 335 HIATPLTQLTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLG 367
             +  +T+L +K  PF W+  C+ +F +LK +L+   +L  PD S  F I +DASK+  G
Sbjct: 569 DYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACG 628

[Close]

BLAST of Cmc01g0013071 vs. ExPASy TrEMBL
Match: A0A5A7TV57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00240 PE=4 SV=1)

HSP 1 Score: 685.3 bits (1767), Expect = 1.4e-193
Identity = 346/389 (88.95%), Postives = 352/389 (90.49%), Query Frame = 0


Query: 1    MRASKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPKELPRLPPHREVEFAIEL 60
            +RASKLLSQGTW ILASVVDTREVDVSLSSEPVVRDYPDVFP+ELP LPPHREVEFAIEL
Sbjct: 990  IRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIEL 1049

Query: 61   EPGTVPISRAPYRMAPEELKELNVQLQELLNKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
            EPGTVPISRAPYRMAP ELKEL VQLQELL+KGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 1050 EPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 1109

Query: 121  DYRELNKVTVKNRYPLPRIDDLFDQLHGATVFSKFDLRSGYHQLRIKDGDVPKTTFRSRY 180
            DYRELNKVTVKNRYPLPRIDDLFDQL GATVFSK DLRSGYHQLRIKDGDVPKT FRSRY
Sbjct: 1110 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRY 1169

Query: 181  GHYEFIVMSFGLTNAPAVFMDLMNR------------------------AEHEEHLRMVL 240
            GHYEFIVMSFGLTNAPAVFMDLMNR                        AEHEEHLR+VL
Sbjct: 1170 GHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVL 1229

Query: 241  QTLRDNKLYAKFSKCEFWLKLVSFLGHVVSKAEVSVDPAKIEAVTSWTRPSTVSKVRNFL 300
            QTLRDNKLYAKFSKCEFWLK VSFLGHVVSKA VSVDPAKIEAVT WTRPSTVS+VR+FL
Sbjct: 1230 QTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFL 1289

Query: 301  GLAGYYRRFVENFFHIATPLTQLTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG 360
            GLAGYYRRFVENF  IATPLTQLTRK APFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG
Sbjct: 1290 GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG 1349

Query: 361  SFVIYSDASKKGLGCVLMQQGKVVAYASR 366
            SFVIYSDASKKGLGCVLMQQGKVVAYASR
Sbjct: 1350 SFVIYSDASKKGLGCVLMQQGKVVAYASR 1378

[Close]

BLAST of Cmc01g0013071 vs. ExPASy TrEMBL
Match: A0A5A7U330 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00040 PE=4 SV=1)

HSP 1 Score: 682.2 bits (1759), Expect = 1.2e-192
Identity = 345/389 (88.69%), Postives = 350/389 (89.97%), Query Frame = 0


Query: 1   MRASKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPKELPRLPPHREVEFAIEL 60
           +RASKLLSQGTW ILASVVDTRE DVSLSSEPVVRDYPDVFP+ELP LPPHREVEFAIEL
Sbjct: 507 IRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIEL 566

Query: 61  EPGTVPISRAPYRMAPEELKELNVQLQELLNKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
           EPGTVPISRAPYRMAP ELKEL VQLQELL+KGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 567 EPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 626

Query: 121 DYRELNKVTVKNRYPLPRIDDLFDQLHGATVFSKFDLRSGYHQLRIKDGDVPKTTFRSRY 180
           DYRELNKVTVKNRYPLPRIDDLFDQL GATVFSK DLRSGYHQLRIKD DVPKT FRSRY
Sbjct: 627 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRY 686

Query: 181 GHYEFIVMSFGLTNAPAVFMDLMNR------------------------AEHEEHLRMVL 240
           GHYEFIVMSFGLTNAPAVFMDLMNR                        AEHEEHLRMVL
Sbjct: 687 GHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL 746

Query: 241 QTLRDNKLYAKFSKCEFWLKLVSFLGHVVSKAEVSVDPAKIEAVTSWTRPSTVSKVRNFL 300
           QTLRDNKLYAKFSKCEFWLK VSFLGHVVSKA VSVDPAKIEAVT WTRPSTVS+VR+FL
Sbjct: 747 QTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFL 806

Query: 301 GLAGYYRRFVENFFHIATPLTQLTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG 360
           GLAGYYRRFVENF  IATPLTQLTRK APFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG
Sbjct: 807 GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG 866

Query: 361 SFVIYSDASKKGLGCVLMQQGKVVAYASR 366
           SFVIYSDASKKGLGCVLMQQGKVVAYASR
Sbjct: 867 SFVIYSDASKKGLGCVLMQQGKVVAYASR 895

[Close]

BLAST of Cmc01g0013071 vs. ExPASy TrEMBL
Match: A0A5A7TB42 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold118G00260 PE=4 SV=1)

HSP 1 Score: 681.0 bits (1756), Expect = 2.7e-192
Identity = 345/389 (88.69%), Postives = 351/389 (90.23%), Query Frame = 0


Query: 1    MRASKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPKELPRLPPHREVEFAIEL 60
            +RASKLLSQGTW ILASVVDTREVDVSLSSEPVVRDYPDVFP+ELP LPPHREVEFAIEL
Sbjct: 632  IRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIEL 691

Query: 61   EPGTVPISRAPYRMAPEELKELNVQLQELLNKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
            EPGTVPISRAPYRMAP ELKEL VQLQELL+KGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 692  EPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 751

Query: 121  DYRELNKVTVKNRYPLPRIDDLFDQLHGATVFSKFDLRSGYHQLRIKDGDVPKTTFRSRY 180
            DYRELNKVTVKNRYPLPRIDDLFDQL GATVFSK DLRSGYHQLRIKDGDVPKT FRSRY
Sbjct: 752  DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRY 811

Query: 181  GHYEFIVMSFGLTNAPAVFMDLMNR------------------------AEHEEHLRMVL 240
            GHYEFIVMSFGLTNAPAVFMDLMNR                        AEHEEHLR+VL
Sbjct: 812  GHYEFIVMSFGLTNAPAVFMDLMNRVFKEFLDTFVIVFIDDILIYSKMEAEHEEHLRIVL 871

Query: 241  QTLRDNKLYAKFSKCEFWLKLVSFLGHVVSKAEVSVDPAKIEAVTSWTRPSTVSKVRNFL 300
            QTLRDNKLYAKFSKCEFWLK VSFLGHVVSKA VSVDPAKIEAVT WTRPSTVS+VR+FL
Sbjct: 872  QTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFL 931

Query: 301  GLAGYYRRFVENFFHIATPLTQLTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG 360
            GLAGYYRRFVENF  IATPLTQLTRK APFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG
Sbjct: 932  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG 991

Query: 361  SFVIYSDASKKGLGCVLMQQGKVVAYASR 366
            SFVIYSDASKKGLG VLMQQGKVVAYASR
Sbjct: 992  SFVIYSDASKKGLGFVLMQQGKVVAYASR 1020

[Close]

BLAST of Cmc01g0013071 vs. ExPASy TrEMBL
Match: A0A5A7T1Q1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001600 PE=4 SV=1)

HSP 1 Score: 679.9 bits (1753), Expect = 6.0e-192
Identity = 343/389 (88.17%), Postives = 351/389 (90.23%), Query Frame = 0


Query: 1   MRASKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPKELPRLPPHREVEFAIEL 60
           MRASKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFP+ELP LPPHREVEFAIEL
Sbjct: 271 MRASKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIEL 330

Query: 61  EPGTVPISRAPYRMAPEELKELNVQLQELLNKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
           EPGTVPISRAPYRMAP ELKE+ VQLQELL+KGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 331 EPGTVPISRAPYRMAPTELKEMKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 390

Query: 121 DYRELNKVTVKNRYPLPRIDDLFDQLHGATVFSKFDLRSGYHQLRIKDGDVPKTTFRSRY 180
           DYRELNKVTVKN YPLPRIDDLFDQL GATVFSK DLRSGYHQLRIKDGDVPKT FRS+Y
Sbjct: 391 DYRELNKVTVKNIYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSKY 450

Query: 181 GHYEFIVMSFGLTNAPAVFMDLMNR------------------------AEHEEHLRMVL 240
           GHYEFIVMSFGLTNAP VFMDLMNR                        AEHEEHLRMVL
Sbjct: 451 GHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFINDILIYYKTEAEHEEHLRMVL 510

Query: 241 QTLRDNKLYAKFSKCEFWLKLVSFLGHVVSKAEVSVDPAKIEAVTSWTRPSTVSKVRNFL 300
           QTLRDNKLYAKFSKCEFWLK VSFLGHVVSKA V VD AKIEAVTSWTRPST+S+VR+FL
Sbjct: 511 QTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVFVDLAKIEAVTSWTRPSTISEVRSFL 570

Query: 301 GLAGYYRRFVENFFHIATPLTQLTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG 360
           GLAGYYRRFVENF HIATPLTQLTRK APFVWSKACEDSF+NLKQKLVTAPVLTVPDGSG
Sbjct: 571 GLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFRNLKQKLVTAPVLTVPDGSG 630

Query: 361 SFVIYSDASKKGLGCVLMQQGKVVAYASR 366
           SFVIYSDASKKGLGCVLMQQGKVVAYASR
Sbjct: 631 SFVIYSDASKKGLGCVLMQQGKVVAYASR 659

[Close]

BLAST of Cmc01g0013071 vs. ExPASy TrEMBL
Match: A0A5A7T3J6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold510G00020 PE=4 SV=1)

HSP 1 Score: 679.9 bits (1753), Expect = 6.0e-192
Identity = 344/389 (88.43%), Postives = 351/389 (90.23%), Query Frame = 0


Query: 1    MRASKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPKELPRLPPHREVEFAIEL 60
            +RASKLLSQGTW ILASVVDTREVDVSLSSEPVVRDYPDVFP+ELP LPPHREVEFAIEL
Sbjct: 715  IRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIEL 774

Query: 61   EPGTVPISRAPYRMAPEELKELNVQLQELLNKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
            EPGTVPISRAPYRMAP ELKEL VQLQELL+KGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 775  EPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 834

Query: 121  DYRELNKVTVKNRYPLPRIDDLFDQLHGATVFSKFDLRSGYHQLRIKDGDVPKTTFRSRY 180
            DYRELNKVTVKN+YPLPRIDDLFDQLHGATVFSK DLR GYHQLRIKDGDVPKT FRSRY
Sbjct: 835  DYRELNKVTVKNKYPLPRIDDLFDQLHGATVFSKIDLRLGYHQLRIKDGDVPKTAFRSRY 894

Query: 181  GHYEFIVMSFGLTNAPAVFMDLMNR------------------------AEHEEHLRMVL 240
            GHYEFIVMSFGLTNAPAVFMDLMNR                        AEHEEHLR+VL
Sbjct: 895  GHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYFKTEAEHEEHLRIVL 954

Query: 241  QTLRDNKLYAKFSKCEFWLKLVSFLGHVVSKAEVSVDPAKIEAVTSWTRPSTVSKVRNFL 300
            QTLRDNKLYAKFSKCEFWLK VSFLGHVVSKA VSVDPAKIEAVT  TRPSTVS+VR+FL
Sbjct: 955  QTLRDNKLYAKFSKCEFWLKPVSFLGHVVSKAGVSVDPAKIEAVTGSTRPSTVSEVRSFL 1014

Query: 301  GLAGYYRRFVENFFHIATPLTQLTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG 360
            GLAGYYRRFVENF  IATPLTQLTRK APFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG
Sbjct: 1015 GLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG 1074

Query: 361  SFVIYSDASKKGLGCVLMQQGKVVAYASR 366
            SFVIYSDASKKGLGCVLMQQGKVVAYASR
Sbjct: 1075 SFVIYSDASKKGLGCVLMQQGKVVAYASR 1103

[Close]

BLAST of Cmc01g0013071 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 109.0 bits (271), Expect = 8.2e-24
Identity = 56/131 (42.75%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 211 HLRMVLQTLRDNKLYAKFSKCEFWLKLVSFLG--HVVSKAEVSVDPAKIEAVTSWTRPST 270
           HL MVLQ    ++ YA   KC F    +++LG  H++S   VS DPAK+EA+  W  P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 271 VSKVRNFLGLAGYYRRFVENFFHIATPLTQLTRKEAPFVWSKACEDSFQNLKQKLVTAPV 330
            +++R FLGL GYYRRFV+N+  I  PLT+L +K +   W++    +F+ LK  + T PV
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 331 LTVPDGSGSFV 340
           L +PD    FV
Sbjct: 123 LALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc01g0013071 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047433.1	3.0e-193	88.95	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048687.1	2.5e-192	88.69	pol protein [Cucumis melo var. makuwa]	[more]
KAA0040188.1	5.6e-192	88.69	pol protein [Cucumis melo var. makuwa]	[more]
TYK01613.1	1.2e-191	88.43	pol protein [Cucumis melo var. makuwa]	[more]
KAA0036666.1	1.2e-191	88.43	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0013071 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	7.1e-57	35.05	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	3.0e-55	34.34	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q7LHG5	6.7e-55	32.67	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	8.7e-55	32.67	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P10394	6.9e-52	32.63	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]

BLAST of Cmc01g0013071 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TV57	1.4e-193	88.95	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U330	1.2e-192	88.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7TB42	2.7e-192	88.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11...	[more]
A0A5A7T1Q1	6.0e-192	88.17	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5A7T3J6	6.0e-192	88.43	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold51...	[more]

BLAST of Cmc01g0013071 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	8.2e-24	42.75	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 72..92
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 55..194 e-value: 6.2E-65 score: 220.5
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 66..358
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 66..358
None	No IPR available	CDD	cd01647	RT_LTR	coord: 93..245 e-value: 5.85712E-79 score: 238.264
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 255..345 e-value: 1.5E-29 score: 103.8
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 134..205 e-value: 6.2E-65 score: 220.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 206..251 e-value: 4.4E-13 score: 51.1
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 308..366 e-value: 4.4E-16 score: 58.7
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 109..207 e-value: 1.5E-10 score: 41.0
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 33..365

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0013071.1	Cmc01g0013071.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding